Wall clock time and date at job start Mon Mar 30 2020 01:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53123 * 109.57495 * 2 1 4 4 C 1.53034 * 109.27992 * 177.60435 * 3 2 1 5 5 N 1.46847 * 109.51345 * 300.80438 * 4 3 2 6 6 C 1.46895 * 110.99982 * 185.84805 * 5 4 3 7 7 C 1.50700 * 109.47354 * 169.99549 * 6 5 4 8 8 O 1.21282 * 120.00036 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00099 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99960 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47074 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47104 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47336 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00003 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99897 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99763 * 180.02562 * 15 13 12 17 17 Si 1.86792 * 120.00460 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47482 * 89.99356 * 17 15 13 19 19 H 1.48497 * 109.47383 * 209.99834 * 17 15 13 20 20 H 1.48506 * 109.47082 * 329.99677 * 17 15 13 21 21 C 1.46843 * 111.20124 * 61.74903 * 5 4 3 22 22 C 1.53042 * 109.52278 * 298.25596 * 21 5 4 23 23 H 1.09000 * 109.46968 * 300.29446 * 1 2 3 24 24 H 1.09000 * 109.47430 * 60.29800 * 1 2 3 25 25 H 1.09002 * 109.46935 * 180.29882 * 1 2 3 26 26 H 1.09003 * 109.52281 * 239.83230 * 2 1 3 27 27 H 1.08997 * 109.51083 * 57.65029 * 3 2 1 28 28 H 1.08998 * 109.48980 * 297.53960 * 3 2 1 29 29 H 1.09002 * 109.46271 * 180.79158 * 4 3 2 30 30 H 1.08994 * 109.46242 * 60.81457 * 4 3 2 31 31 H 1.09000 * 109.47118 * 289.99436 * 6 5 4 32 32 H 1.09003 * 109.47534 * 49.99526 * 6 5 4 33 33 H 0.97001 * 120.00093 * 0.02562 * 9 7 6 34 34 H 1.09000 * 109.46742 * 300.00416 * 10 9 7 35 35 H 1.08993 * 109.47197 * 60.00027 * 10 9 7 36 36 H 1.08998 * 109.46708 * 299.99818 * 11 10 9 37 37 H 1.09003 * 109.47648 * 59.99696 * 11 10 9 38 38 H 1.08994 * 109.47496 * 300.00064 * 12 11 10 39 39 H 1.09004 * 109.47416 * 59.99779 * 12 11 10 40 40 H 0.97001 * 120.00114 * 180.02562 * 16 15 13 41 41 H 1.08993 * 109.46313 * 58.27251 * 21 5 4 42 42 H 1.09000 * 109.46480 * 178.25361 * 21 5 4 43 43 H 1.08997 * 109.50758 * 179.11703 * 22 21 5 44 44 H 1.08998 * 109.50897 * 299.20258 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0430 1.4427 0.0000 4 6 3.5721 1.4353 0.0604 5 7 4.0116 0.7408 1.2773 6 6 5.4685 0.8344 1.4399 7 6 5.8548 0.3320 2.8071 8 8 5.0005 -0.0655 3.5708 9 7 7.1497 0.3233 3.1809 10 6 7.5252 -0.1657 4.5099 11 6 9.0427 -0.0680 4.6792 12 6 9.4348 -0.5781 6.0673 13 6 10.9295 -0.4825 6.2339 14 1 11.5389 -0.0961 5.4301 15 6 11.5191 -0.8873 7.4127 16 7 12.8235 -0.8034 7.5582 17 14 10.4653 -1.5548 8.8030 18 1 10.3265 -3.0261 8.6566 19 1 11.1093 -1.2455 10.1048 20 1 9.1220 -0.9236 8.7529 21 6 3.5710 -0.6600 1.2779 22 6 2.0417 -0.7151 1.2536 23 1 -0.3633 0.5184 0.8873 24 1 -0.3634 0.5092 -0.8926 25 1 -0.3633 -1.0277 0.0054 26 1 1.8942 -0.5163 -0.8882 27 1 1.6470 1.9699 0.8679 28 1 1.7172 1.9445 -0.9111 29 1 3.9400 2.4612 0.0747 30 1 3.9676 0.9199 -0.8148 31 1 5.9588 0.2282 0.6781 32 1 5.7800 1.8735 1.3333 33 1 7.8330 0.6409 2.5700 34 1 7.0352 0.4404 5.2718 35 1 7.2136 -1.2047 4.6162 36 1 9.5329 -0.6739 3.9172 37 1 9.3541 0.9712 4.5730 38 1 8.9445 0.0280 6.8290 39 1 9.1234 -1.6172 6.1739 40 1 13.2383 -1.0885 8.3874 41 1 3.9666 -1.1655 0.3970 42 1 3.9378 -1.1558 2.1766 43 1 1.7152 -1.7549 1.2381 44 1 1.6456 -0.2224 2.1415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178122729.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:06 Heat of formation + Delta-G solvation = -59.659784 kcal Electronic energy + Delta-G solvation = -20260.409640 eV Core-core repulsion = 17211.526102 eV Total energy + Delta-G solvation = -3048.883538 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.06898 -38.65354 -35.58755 -34.64886 -33.30757 -31.52782 -31.03542 -29.56141 -27.41516 -25.63891 -23.40306 -22.83348 -21.92318 -20.73859 -19.89893 -19.81062 -17.05128 -16.73871 -16.24944 -15.81342 -15.27167 -14.98762 -14.71906 -14.50008 -14.30768 -14.03258 -13.99156 -13.24113 -13.00763 -12.70031 -12.60913 -12.43924 -12.13071 -11.94878 -11.90966 -11.65735 -11.39682 -11.08168 -10.93996 -10.89393 -10.56971 -10.52000 -10.12623 -9.95269 -9.75833 -9.46608 -9.23210 -8.83430 -8.55981 -8.47325 -6.06851 -4.05583 2.75707 3.13876 3.31092 3.38739 3.43234 3.83765 4.44113 4.49102 4.53798 4.56636 4.77842 4.98434 5.04762 5.07002 5.16731 5.23423 5.27240 5.29359 5.39299 5.40450 5.47929 5.57687 5.60634 5.66290 5.74409 5.79456 5.87417 5.95684 6.01908 6.02390 6.21849 6.36989 6.44695 6.69536 6.78344 6.80338 6.90735 7.22420 7.35908 7.66837 7.76639 8.38768 8.49863 8.96861 9.55427 11.06343 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.048861 B = 0.002704 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.916344 B =10352.194093 C =10751.783428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.110 4.110 4 C 0.056 3.944 5 N -0.520 5.520 6 C 0.036 3.964 7 C 0.508 3.492 8 O -0.527 6.527 9 N -0.729 5.729 10 C 0.116 3.884 11 C -0.113 4.113 12 C -0.011 4.011 13 C -0.522 4.522 14 H 0.072 0.928 15 C 0.066 3.934 16 N -0.903 5.903 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.264 1.264 21 C 0.050 3.950 22 C -0.108 4.108 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.399 0.601 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.019 0.981 39 H 0.014 0.986 40 H 0.263 0.737 41 H 0.025 0.975 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.270 3.461 -18.228 28.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.148 4.148 4 C -0.072 4.072 5 N -0.245 5.245 6 C -0.096 4.096 7 C 0.293 3.707 8 O -0.403 6.403 9 N -0.381 5.381 10 C -0.007 4.007 11 C -0.151 4.151 12 C -0.049 4.049 13 C -0.560 4.560 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.542 5.542 17 Si 0.707 3.293 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.189 1.189 21 C -0.078 4.078 22 C -0.146 4.146 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.232 0.768 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.043 0.957 42 H 0.114 0.886 43 H 0.083 0.917 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.969 3.366 -17.130 28.060 hybrid contribution 0.471 -0.595 -0.211 0.787 sum -21.498 2.771 -17.340 27.759 Atomic orbital electron populations 1.21805 0.95144 1.01635 1.01707 1.21215 0.95630 0.96224 0.98374 1.21630 0.94343 0.96652 1.02167 1.22118 0.96218 0.98789 0.90091 1.61567 1.10000 1.15505 1.37443 1.21960 0.89847 1.02835 0.94918 1.20459 0.82569 0.78706 0.88956 1.90667 1.49188 1.46494 1.53931 1.46168 1.07645 1.65854 1.18406 1.21621 0.97285 0.99238 0.82547 1.21699 0.91031 1.01623 1.00739 1.19504 0.97634 0.95925 0.91873 1.21098 0.90291 1.42950 1.01652 0.91024 1.25036 0.94851 0.95191 0.98461 1.69915 1.09415 1.48195 1.26671 0.86769 0.81178 0.79672 0.81643 1.20258 1.21364 1.18874 1.22283 0.95969 0.87987 1.01542 1.21608 0.94677 1.00137 0.98198 0.92520 0.92893 0.92779 0.91754 0.90893 0.91613 0.90657 0.94989 0.92089 0.87906 0.76784 0.91814 0.91926 0.92182 0.92100 0.96297 0.96774 0.92701 0.95678 0.88610 0.91727 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.20 37.16 0.34 -0.65 16 2 C -0.10 -0.76 2.79 -90.49 -0.25 -1.01 16 3 C -0.11 -0.85 5.38 -26.65 -0.14 -1.00 16 4 C 0.06 0.47 5.46 -3.84 -0.02 0.45 16 5 N -0.52 -5.71 4.40 -236.12 -1.04 -6.75 16 6 C 0.04 0.36 5.45 -4.98 -0.03 0.33 16 7 C 0.51 7.07 7.50 -10.98 -0.08 6.98 16 8 O -0.53 -9.40 14.32 5.56 0.08 -9.32 16 9 N -0.73 -9.69 5.56 -60.29 -0.33 -10.03 16 10 C 0.12 1.91 5.67 -4.04 -0.02 1.88 16 11 C -0.11 -2.09 5.27 -26.74 -0.14 -2.23 16 12 C -0.01 -0.27 4.04 -27.89 -0.11 -0.38 16 13 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 14 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 15 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 16 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 17 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 20 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 21 C 0.05 0.56 5.11 -3.83 -0.02 0.54 16 22 C -0.11 -1.05 5.38 -26.64 -0.14 -1.19 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.56 8.02 -51.93 -0.42 0.14 16 30 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 32 H 0.10 0.84 7.99 -51.93 -0.41 0.43 16 33 H 0.40 4.17 8.47 -40.82 -0.35 3.82 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 39 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.10 1.33 5.78 -51.93 -0.30 1.03 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 346.27 15.07 5.22 5.22 Total: -1.00 -32.52 346.27 -9.19 -41.72 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -8.17 Total: -1.49 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -1.05 Total: -9.49 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.60 Total: -43.76 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.08 Total: -9.32 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.52 -9.19 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178122729.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.943 kcal (2) G-P(sol) polarization free energy of solvation -32.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds