Wall clock time and date at job start Mon Mar 30 2020 01:43:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53123 * 109.57495 * 2 1
4 4 C 1.53034 * 109.27992 * 177.60435 * 3 2 1
5 5 N 1.46847 * 109.51345 * 300.80438 * 4 3 2
6 6 C 1.46895 * 110.99982 * 185.84805 * 5 4 3
7 7 C 1.50700 * 109.47354 * 169.99549 * 6 5 4
8 8 O 1.21282 * 120.00036 * 0.02562 * 7 6 5
9 9 N 1.34778 * 120.00099 * 179.97438 * 7 6 5
10 10 C 1.46505 * 119.99960 * 180.02562 * 9 7 6
11 11 C 1.52997 * 109.47074 * 180.02562 * 10 9 7
12 12 C 1.52993 * 109.47104 * 179.97438 * 11 10 9
13 13 C 1.50702 * 109.47336 * 179.97438 * 12 11 10
14 14 H 1.08005 * 120.00003 * 0.02562 * 13 12 11
15 15 C 1.37876 * 119.99897 * 179.97438 * 13 12 11
16 16 N 1.31520 * 119.99763 * 180.02562 * 15 13 12
17 17 Si 1.86792 * 120.00460 * 0.02562 * 15 13 12
18 18 H 1.48506 * 109.47482 * 89.99356 * 17 15 13
19 19 H 1.48497 * 109.47383 * 209.99834 * 17 15 13
20 20 H 1.48506 * 109.47082 * 329.99677 * 17 15 13
21 21 C 1.46843 * 111.20124 * 61.74903 * 5 4 3
22 22 C 1.53042 * 109.52278 * 298.25596 * 21 5 4
23 23 H 1.09000 * 109.46968 * 300.29446 * 1 2 3
24 24 H 1.09000 * 109.47430 * 60.29800 * 1 2 3
25 25 H 1.09002 * 109.46935 * 180.29882 * 1 2 3
26 26 H 1.09003 * 109.52281 * 239.83230 * 2 1 3
27 27 H 1.08997 * 109.51083 * 57.65029 * 3 2 1
28 28 H 1.08998 * 109.48980 * 297.53960 * 3 2 1
29 29 H 1.09002 * 109.46271 * 180.79158 * 4 3 2
30 30 H 1.08994 * 109.46242 * 60.81457 * 4 3 2
31 31 H 1.09000 * 109.47118 * 289.99436 * 6 5 4
32 32 H 1.09003 * 109.47534 * 49.99526 * 6 5 4
33 33 H 0.97001 * 120.00093 * 0.02562 * 9 7 6
34 34 H 1.09000 * 109.46742 * 300.00416 * 10 9 7
35 35 H 1.08993 * 109.47197 * 60.00027 * 10 9 7
36 36 H 1.08998 * 109.46708 * 299.99818 * 11 10 9
37 37 H 1.09003 * 109.47648 * 59.99696 * 11 10 9
38 38 H 1.08994 * 109.47496 * 300.00064 * 12 11 10
39 39 H 1.09004 * 109.47416 * 59.99779 * 12 11 10
40 40 H 0.97001 * 120.00114 * 180.02562 * 16 15 13
41 41 H 1.08993 * 109.46313 * 58.27251 * 21 5 4
42 42 H 1.09000 * 109.46480 * 178.25361 * 21 5 4
43 43 H 1.08997 * 109.50758 * 179.11703 * 22 21 5
44 44 H 1.08998 * 109.50897 * 299.20258 * 22 21 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0430 1.4427 0.0000
4 6 3.5721 1.4353 0.0604
5 7 4.0116 0.7408 1.2773
6 6 5.4685 0.8344 1.4399
7 6 5.8548 0.3320 2.8071
8 8 5.0005 -0.0655 3.5708
9 7 7.1497 0.3233 3.1809
10 6 7.5252 -0.1657 4.5099
11 6 9.0427 -0.0680 4.6792
12 6 9.4348 -0.5781 6.0673
13 6 10.9295 -0.4825 6.2339
14 1 11.5389 -0.0961 5.4301
15 6 11.5191 -0.8873 7.4127
16 7 12.8235 -0.8034 7.5582
17 14 10.4653 -1.5548 8.8030
18 1 10.3265 -3.0261 8.6566
19 1 11.1093 -1.2455 10.1048
20 1 9.1220 -0.9236 8.7529
21 6 3.5710 -0.6600 1.2779
22 6 2.0417 -0.7151 1.2536
23 1 -0.3633 0.5184 0.8873
24 1 -0.3634 0.5092 -0.8926
25 1 -0.3633 -1.0277 0.0054
26 1 1.8942 -0.5163 -0.8882
27 1 1.6470 1.9699 0.8679
28 1 1.7172 1.9445 -0.9111
29 1 3.9400 2.4612 0.0747
30 1 3.9676 0.9199 -0.8148
31 1 5.9588 0.2282 0.6781
32 1 5.7800 1.8735 1.3333
33 1 7.8330 0.6409 2.5700
34 1 7.0352 0.4404 5.2718
35 1 7.2136 -1.2047 4.6162
36 1 9.5329 -0.6739 3.9172
37 1 9.3541 0.9712 4.5730
38 1 8.9445 0.0280 6.8290
39 1 9.1234 -1.6172 6.1739
40 1 13.2383 -1.0885 8.3874
41 1 3.9666 -1.1655 0.3970
42 1 3.9378 -1.1558 2.1766
43 1 1.7152 -1.7549 1.2381
44 1 1.6456 -0.2224 2.1415
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000178122729.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:43:06
Heat of formation + Delta-G solvation = -59.659784 kcal
Electronic energy + Delta-G solvation = -20260.409640 eV
Core-core repulsion = 17211.526102 eV
Total energy + Delta-G solvation = -3048.883538 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-40.06898 -38.65354 -35.58755 -34.64886 -33.30757 -31.52782 -31.03542 -29.56141
-27.41516 -25.63891 -23.40306 -22.83348 -21.92318 -20.73859 -19.89893 -19.81062
-17.05128 -16.73871 -16.24944 -15.81342 -15.27167 -14.98762 -14.71906 -14.50008
-14.30768 -14.03258 -13.99156 -13.24113 -13.00763 -12.70031 -12.60913 -12.43924
-12.13071 -11.94878 -11.90966 -11.65735 -11.39682 -11.08168 -10.93996 -10.89393
-10.56971 -10.52000 -10.12623 -9.95269 -9.75833 -9.46608 -9.23210 -8.83430
-8.55981 -8.47325 -6.06851 -4.05583 2.75707 3.13876 3.31092 3.38739
3.43234 3.83765 4.44113 4.49102 4.53798 4.56636 4.77842 4.98434
5.04762 5.07002 5.16731 5.23423 5.27240 5.29359 5.39299 5.40450
5.47929 5.57687 5.60634 5.66290 5.74409 5.79456 5.87417 5.95684
6.01908 6.02390 6.21849 6.36989 6.44695 6.69536 6.78344 6.80338
6.90735 7.22420 7.35908 7.66837 7.76639 8.38768 8.49863 8.96861
9.55427 11.06343
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.048861 B = 0.002704 C = 0.002604
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 572.916344 B =10352.194093 C =10751.783428
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.096 4.096
3 C -0.110 4.110
4 C 0.056 3.944
5 N -0.520 5.520
6 C 0.036 3.964
7 C 0.508 3.492
8 O -0.527 6.527
9 N -0.729 5.729
10 C 0.116 3.884
11 C -0.113 4.113
12 C -0.011 4.011
13 C -0.522 4.522
14 H 0.072 0.928
15 C 0.066 3.934
16 N -0.903 5.903
17 Si 0.880 3.120
18 H -0.277 1.277
19 H -0.288 1.288
20 H -0.264 1.264
21 C 0.050 3.950
22 C -0.108 4.108
23 H 0.056 0.944
24 H 0.052 0.948
25 H 0.053 0.947
26 H 0.064 0.936
27 H 0.072 0.928
28 H 0.065 0.935
29 H 0.075 0.925
30 H 0.032 0.968
31 H 0.061 0.939
32 H 0.103 0.897
33 H 0.399 0.601
34 H 0.063 0.937
35 H 0.062 0.938
36 H 0.059 0.941
37 H 0.060 0.940
38 H 0.019 0.981
39 H 0.014 0.986
40 H 0.263 0.737
41 H 0.025 0.975
42 H 0.096 0.904
43 H 0.064 0.936
44 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.270 3.461 -18.228 28.224
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.114 4.114
3 C -0.148 4.148
4 C -0.072 4.072
5 N -0.245 5.245
6 C -0.096 4.096
7 C 0.293 3.707
8 O -0.403 6.403
9 N -0.381 5.381
10 C -0.007 4.007
11 C -0.151 4.151
12 C -0.049 4.049
13 C -0.560 4.560
14 H 0.090 0.910
15 C -0.135 4.135
16 N -0.542 5.542
17 Si 0.707 3.293
18 H -0.203 1.203
19 H -0.214 1.214
20 H -0.189 1.189
21 C -0.078 4.078
22 C -0.146 4.146
23 H 0.075 0.925
24 H 0.071 0.929
25 H 0.072 0.928
26 H 0.082 0.918
27 H 0.091 0.909
28 H 0.084 0.916
29 H 0.093 0.907
30 H 0.050 0.950
31 H 0.079 0.921
32 H 0.121 0.879
33 H 0.232 0.768
34 H 0.082 0.918
35 H 0.081 0.919
36 H 0.078 0.922
37 H 0.079 0.921
38 H 0.037 0.963
39 H 0.032 0.968
40 H 0.073 0.927
41 H 0.043 0.957
42 H 0.114 0.886
43 H 0.083 0.917
44 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -21.969 3.366 -17.130 28.060
hybrid contribution 0.471 -0.595 -0.211 0.787
sum -21.498 2.771 -17.340 27.759
Atomic orbital electron populations
1.21805 0.95144 1.01635 1.01707 1.21215 0.95630 0.96224 0.98374
1.21630 0.94343 0.96652 1.02167 1.22118 0.96218 0.98789 0.90091
1.61567 1.10000 1.15505 1.37443 1.21960 0.89847 1.02835 0.94918
1.20459 0.82569 0.78706 0.88956 1.90667 1.49188 1.46494 1.53931
1.46168 1.07645 1.65854 1.18406 1.21621 0.97285 0.99238 0.82547
1.21699 0.91031 1.01623 1.00739 1.19504 0.97634 0.95925 0.91873
1.21098 0.90291 1.42950 1.01652 0.91024 1.25036 0.94851 0.95191
0.98461 1.69915 1.09415 1.48195 1.26671 0.86769 0.81178 0.79672
0.81643 1.20258 1.21364 1.18874 1.22283 0.95969 0.87987 1.01542
1.21608 0.94677 1.00137 0.98198 0.92520 0.92893 0.92779 0.91754
0.90893 0.91613 0.90657 0.94989 0.92089 0.87906 0.76784 0.91814
0.91926 0.92182 0.92100 0.96297 0.96774 0.92701 0.95678 0.88610
0.91727 0.90828
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.99 9.20 37.16 0.34 -0.65 16
2 C -0.10 -0.76 2.79 -90.49 -0.25 -1.01 16
3 C -0.11 -0.85 5.38 -26.65 -0.14 -1.00 16
4 C 0.06 0.47 5.46 -3.84 -0.02 0.45 16
5 N -0.52 -5.71 4.40 -236.12 -1.04 -6.75 16
6 C 0.04 0.36 5.45 -4.98 -0.03 0.33 16
7 C 0.51 7.07 7.50 -10.98 -0.08 6.98 16
8 O -0.53 -9.40 14.32 5.56 0.08 -9.32 16
9 N -0.73 -9.69 5.56 -60.29 -0.33 -10.03 16
10 C 0.12 1.91 5.67 -4.04 -0.02 1.88 16
11 C -0.11 -2.09 5.27 -26.74 -0.14 -2.23 16
12 C -0.01 -0.27 4.04 -27.89 -0.11 -0.38 16
13 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16
14 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16
15 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16
16 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16
17 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16
18 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16
19 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16
20 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16
21 C 0.05 0.56 5.11 -3.83 -0.02 0.54 16
22 C -0.11 -1.05 5.38 -26.64 -0.14 -1.19 16
23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
24 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16
25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16
26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
29 H 0.07 0.56 8.02 -51.93 -0.42 0.14 16
30 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16
31 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16
32 H 0.10 0.84 7.99 -51.93 -0.41 0.43 16
33 H 0.40 4.17 8.47 -40.82 -0.35 3.82 16
34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
38 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16
39 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16
40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16
41 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16
42 H 0.10 1.33 5.78 -51.93 -0.30 1.03 16
43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16
44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
LS Contribution 346.27 15.07 5.22 5.22
Total: -1.00 -32.52 346.27 -9.19 -41.72
By element:
Atomic # 1 Polarization: 6.68 SS G_CDS: -8.17 Total: -1.49 kcal
Atomic # 6 Polarization: -8.43 SS G_CDS: -1.05 Total: -9.49 kcal
Atomic # 7 Polarization: -43.16 SS G_CDS: -0.60 Total: -43.76 kcal
Atomic # 8 Polarization: -9.40 SS G_CDS: 0.08 Total: -9.32 kcal
Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal
Total LS contribution 5.22 Total: 5.22 kcal
Total: -32.52 -9.19 -41.72 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000178122729.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.943 kcal
(2) G-P(sol) polarization free energy of solvation -32.522 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.465 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.717 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.660 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds