Wall clock time and date at job start Mon Mar 30 2020 01:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99497 * 2 1 4 4 H 1.48505 * 109.47287 * 269.99787 * 3 2 1 5 5 H 1.48506 * 109.47118 * 150.00264 * 3 2 1 6 6 H 1.48502 * 109.47497 * 30.00007 * 3 2 1 7 7 C 1.37876 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99709 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99824 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46721 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47146 * 179.97438 * 10 9 7 12 12 C 1.46953 * 111.00265 * 293.80112 * 11 10 9 13 13 C 1.53056 * 109.36727 * 176.80932 * 12 11 10 14 14 N 1.46954 * 109.36407 * 58.39968 * 13 12 11 15 15 C 1.46897 * 110.99779 * 176.81220 * 14 13 12 16 16 C 1.52995 * 109.47455 * 307.65958 * 15 14 13 17 17 H 1.09002 * 110.43134 * 55.68659 * 16 15 14 18 18 C 1.54804 * 110.49057 * 293.00260 * 16 15 14 19 19 C 1.54997 * 102.09412 * 220.44217 * 18 16 15 20 20 O 1.44373 * 103.49066 * 37.01734 * 19 18 16 21 21 C 1.43748 * 106.97761 * 319.94635 * 20 19 18 22 22 C 1.46953 * 110.88044 * 300.68266 * 14 13 12 23 23 C 1.46958 * 111.00488 * 169.99799 * 11 10 9 24 24 H 0.96999 * 120.00690 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47018 * 299.99596 * 9 7 2 26 26 H 1.09000 * 109.47519 * 59.99948 * 9 7 2 27 27 H 1.09001 * 109.47438 * 299.99738 * 10 9 7 28 28 H 1.09000 * 109.47246 * 59.99684 * 10 9 7 29 29 H 1.09004 * 109.48921 * 296.77491 * 12 11 10 30 30 H 1.09004 * 109.48938 * 56.84236 * 12 11 10 31 31 H 1.09005 * 109.48603 * 298.43175 * 13 12 11 32 32 H 1.08999 * 109.48812 * 178.36938 * 13 12 11 33 33 H 1.09003 * 109.47044 * 67.66582 * 15 14 13 34 34 H 1.09004 * 109.47075 * 187.66067 * 15 14 13 35 35 H 1.09004 * 110.90715 * 338.63919 * 18 16 15 36 36 H 1.09003 * 110.91348 * 102.23940 * 18 16 15 37 37 H 1.09003 * 110.61222 * 278.52080 * 19 18 16 38 38 H 1.08999 * 110.75546 * 155.58904 * 19 18 16 39 39 H 1.09001 * 109.87594 * 267.08674 * 21 20 19 40 40 H 1.08999 * 110.00424 * 146.00543 * 21 20 19 41 41 H 1.09004 * 109.48921 * 299.35364 * 22 14 13 42 42 H 1.09003 * 109.50857 * 179.30161 * 22 14 13 43 43 H 1.09000 * 109.48304 * 303.16068 * 23 11 10 44 44 H 1.08994 * 109.48552 * 63.20078 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 3.5467 1.4403 0.7000 6 1 1.4464 2.6528 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 7 5.4906 -2.6363 0.0009 12 6 6.0173 -2.0826 -1.2543 13 6 7.5451 -2.0263 -1.1826 14 7 8.0718 -3.3774 -0.9445 15 6 9.5408 -3.3773 -0.9445 16 6 10.0508 -2.7076 -2.2221 17 1 9.6347 -1.7047 -2.3181 18 6 9.6972 -3.5649 -3.4616 19 6 10.9852 -3.4473 -4.3159 20 8 12.0428 -3.4525 -3.3331 21 6 11.5908 -2.6552 -2.2258 22 6 7.5452 -3.9312 0.3107 23 6 6.0174 -3.9874 0.2391 24 1 -0.4851 0.8400 0.0004 25 1 3.8752 -0.6803 -0.8889 26 1 3.8746 -0.6798 0.8911 27 1 3.6580 -3.1504 0.8907 28 1 3.6586 -3.1500 -0.8892 29 1 5.7154 -2.7179 -2.0870 30 1 5.6229 -1.0772 -1.4019 31 1 7.8469 -1.3693 -0.3669 32 1 7.9394 -1.6429 -2.1237 33 1 9.9041 -2.8276 -0.0761 34 1 9.9042 -4.4041 -0.9026 35 1 9.5119 -4.6009 -3.1779 36 1 8.8400 -3.1487 -3.9909 37 1 10.9886 -2.5137 -4.8784 38 1 11.0818 -4.2996 -4.9884 39 1 11.9264 -1.6255 -2.3492 40 1 11.9778 -3.0614 -1.2913 41 1 7.8470 -3.2958 1.1434 42 1 7.9396 -4.9365 0.4588 43 1 5.6230 -4.3707 1.1802 44 1 5.7152 -4.6444 -0.5764 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178470518.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:16 Heat of formation + Delta-G solvation = -38.301331 kcal Electronic energy + Delta-G solvation = -21090.186034 eV Core-core repulsion = 18042.228668 eV Total energy + Delta-G solvation = -3047.957366 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.05276 -38.83368 -35.97503 -33.30888 -32.35826 -30.79268 -30.37849 -29.63438 -27.10519 -24.49094 -23.72508 -23.01906 -22.68334 -20.47881 -20.14976 -19.44618 -17.18062 -16.76581 -16.31374 -15.60355 -15.27888 -14.99326 -14.80630 -14.65971 -14.41900 -14.10765 -13.67378 -13.43681 -13.12846 -12.77919 -12.54749 -12.41133 -11.96541 -11.64678 -11.55907 -11.40766 -11.18796 -11.11597 -11.08642 -10.94315 -10.79108 -10.47600 -9.94026 -9.89286 -9.88644 -9.66089 -9.20744 -8.53226 -8.40268 -7.84670 -6.04759 -4.02862 3.30736 3.38516 3.44158 3.62884 3.78151 4.31270 4.37364 4.40052 4.45604 4.68801 4.88485 4.94868 5.03618 5.10331 5.21380 5.23023 5.29729 5.34332 5.44490 5.46856 5.48358 5.52009 5.55024 5.65859 5.66517 5.82680 5.85166 5.96044 6.05197 6.06251 6.17242 6.24852 6.37210 6.58375 6.75952 6.93217 6.98476 7.16145 7.30629 7.59085 7.63075 7.84726 8.52867 8.99511 9.57731 11.08669 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030304 B = 0.003627 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.739258 B = 7718.579968 C = 8161.712000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.263 1.263 6 H -0.288 1.288 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.006 4.006 10 C 0.072 3.928 11 N -0.544 5.544 12 C 0.056 3.944 13 C 0.054 3.946 14 N -0.537 5.537 15 C 0.066 3.934 16 C -0.127 4.127 17 H 0.087 0.913 18 C -0.135 4.135 19 C 0.042 3.958 20 O -0.381 6.381 21 C 0.052 3.948 22 C 0.060 3.940 23 C 0.057 3.943 24 H 0.263 0.737 25 H 0.010 0.990 26 H 0.024 0.976 27 H 0.067 0.933 28 H 0.027 0.973 29 H 0.038 0.962 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.041 0.959 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.528 -6.749 -4.677 23.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.188 1.188 6 H -0.214 1.214 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.044 4.044 10 C -0.055 4.055 11 N -0.269 5.269 12 C -0.073 4.073 13 C -0.074 4.074 14 N -0.262 5.262 15 C -0.062 4.062 16 C -0.146 4.146 17 H 0.106 0.894 18 C -0.173 4.173 19 C -0.034 4.034 20 O -0.300 6.300 21 C -0.025 4.025 22 C -0.068 4.068 23 C -0.072 4.072 24 H 0.073 0.927 25 H 0.028 0.972 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.059 0.941 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 22.565 -6.744 -4.678 24.012 hybrid contribution 0.026 1.070 0.038 1.071 sum 22.591 -5.674 -4.641 23.751 Atomic orbital electron populations 1.69913 1.06317 1.26911 1.51175 1.24999 0.94709 0.99167 0.94513 0.86771 0.80519 0.83530 0.78468 1.20365 1.18794 1.21412 1.21089 0.89448 0.94497 1.50925 0.91131 1.19562 0.96424 0.91773 0.96641 1.22108 0.83259 1.00296 0.99833 1.62261 1.10082 1.20587 1.33967 1.22163 0.93033 1.01023 0.91039 1.22285 0.95402 0.89043 1.00696 1.62196 1.06468 1.22665 1.34886 1.22135 0.87981 1.00601 0.95464 1.22694 0.95227 1.00615 0.96022 0.89433 1.23055 0.97786 1.01434 0.95032 1.23628 0.86255 1.01641 0.91897 1.88856 1.40239 1.71825 1.29068 1.23178 0.93153 0.95507 0.90705 1.22143 0.95280 0.99353 0.90032 1.22097 0.93468 0.90695 1.00902 0.92729 0.97157 0.95818 0.91487 0.95511 0.94417 0.89716 0.94155 0.90406 0.94755 0.90467 0.89967 0.90096 0.92383 0.89076 0.92363 0.89855 0.94100 0.90781 0.90531 0.94483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.15 3.98 -27.88 -0.11 -0.26 16 10 C 0.07 1.46 4.90 -3.82 -0.02 1.44 16 11 N -0.54 -9.37 4.71 -234.47 -1.10 -10.48 16 12 C 0.06 0.88 5.41 -3.77 -0.02 0.86 16 13 C 0.05 0.68 5.15 -3.77 -0.02 0.66 16 14 N -0.54 -6.27 4.63 -234.47 -1.09 -7.35 16 15 C 0.07 0.63 4.23 -3.83 -0.02 0.61 16 16 C -0.13 -1.10 2.60 -89.10 -0.23 -1.33 16 17 H 0.09 0.77 6.06 -51.93 -0.31 0.45 16 18 C -0.14 -1.17 6.53 -24.73 -0.16 -1.33 16 19 C 0.04 0.35 7.72 38.21 0.29 0.65 16 20 O -0.38 -3.99 11.52 -35.23 -0.41 -4.39 16 21 C 0.05 0.44 7.37 37.73 0.28 0.72 16 22 C 0.06 0.72 5.62 -3.77 -0.02 0.70 16 23 C 0.06 0.81 5.61 -3.77 -0.02 0.79 16 24 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 25 H 0.01 0.24 5.92 -51.93 -0.31 -0.06 16 26 H 0.02 0.59 7.20 -51.93 -0.37 0.21 16 27 H 0.07 1.36 8.03 -51.93 -0.42 0.95 16 28 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 1.44 6.34 -51.93 -0.33 1.11 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.86 5.92 -51.93 -0.31 0.56 16 33 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 35 H 0.08 0.77 7.82 -51.93 -0.41 0.36 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.64 7.69 -51.93 -0.40 0.25 16 41 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 44 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -31.08 334.23 -9.86 -40.94 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -7.93 Total: -3.81 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -0.48 Total: -9.88 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -1.42 Total: -45.07 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.41 Total: -4.39 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.08 -9.86 -40.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178470518.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.641 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds