Wall clock time and date at job start Mon Mar 30 2020 01:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99497 * 2 1 4 4 H 1.48505 * 109.47287 * 269.99787 * 3 2 1 5 5 H 1.48506 * 109.47118 * 150.00264 * 3 2 1 6 6 H 1.48502 * 109.47497 * 30.00007 * 3 2 1 7 7 C 1.37876 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99709 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99824 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.46721 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47146 * 179.97438 * 10 9 7 12 12 C 1.46953 * 111.00265 * 293.80112 * 11 10 9 13 13 C 1.53056 * 109.36727 * 176.80932 * 12 11 10 14 14 N 1.46954 * 109.36407 * 58.39968 * 13 12 11 15 15 C 1.46897 * 110.99779 * 176.81220 * 14 13 12 16 16 C 1.52995 * 109.47455 * 307.65958 * 15 14 13 17 17 H 1.09002 * 110.43134 * 55.68659 * 16 15 14 18 18 C 1.54804 * 110.49057 * 293.00260 * 16 15 14 19 19 C 1.54997 * 102.09412 * 220.44217 * 18 16 15 20 20 O 1.44373 * 103.49066 * 37.01734 * 19 18 16 21 21 C 1.43748 * 106.97761 * 319.94635 * 20 19 18 22 22 C 1.46953 * 110.88044 * 300.68266 * 14 13 12 23 23 C 1.46958 * 111.00488 * 169.99799 * 11 10 9 24 24 H 0.96999 * 120.00690 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47018 * 299.99596 * 9 7 2 26 26 H 1.09000 * 109.47519 * 59.99948 * 9 7 2 27 27 H 1.09001 * 109.47438 * 299.99738 * 10 9 7 28 28 H 1.09000 * 109.47246 * 59.99684 * 10 9 7 29 29 H 1.09004 * 109.48921 * 296.77491 * 12 11 10 30 30 H 1.09004 * 109.48938 * 56.84236 * 12 11 10 31 31 H 1.09005 * 109.48603 * 298.43175 * 13 12 11 32 32 H 1.08999 * 109.48812 * 178.36938 * 13 12 11 33 33 H 1.09003 * 109.47044 * 67.66582 * 15 14 13 34 34 H 1.09004 * 109.47075 * 187.66067 * 15 14 13 35 35 H 1.09004 * 110.90715 * 338.63919 * 18 16 15 36 36 H 1.09003 * 110.91348 * 102.23940 * 18 16 15 37 37 H 1.09003 * 110.61222 * 278.52080 * 19 18 16 38 38 H 1.08999 * 110.75546 * 155.58904 * 19 18 16 39 39 H 1.09001 * 109.87594 * 267.08674 * 21 20 19 40 40 H 1.08999 * 110.00424 * 146.00543 * 21 20 19 41 41 H 1.09004 * 109.48921 * 299.35364 * 22 14 13 42 42 H 1.09003 * 109.50857 * 179.30161 * 22 14 13 43 43 H 1.09000 * 109.48304 * 303.16068 * 23 11 10 44 44 H 1.08994 * 109.48552 * 63.20078 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 3.5467 1.4403 0.7000 6 1 1.4464 2.6528 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0010 11 7 5.4906 -2.6363 0.0009 12 6 6.0173 -2.0826 -1.2543 13 6 7.5451 -2.0263 -1.1826 14 7 8.0718 -3.3774 -0.9445 15 6 9.5408 -3.3773 -0.9445 16 6 10.0508 -2.7076 -2.2221 17 1 9.6347 -1.7047 -2.3181 18 6 9.6972 -3.5649 -3.4616 19 6 10.9852 -3.4473 -4.3159 20 8 12.0428 -3.4525 -3.3331 21 6 11.5908 -2.6552 -2.2258 22 6 7.5452 -3.9312 0.3107 23 6 6.0174 -3.9874 0.2391 24 1 -0.4851 0.8400 0.0004 25 1 3.8752 -0.6803 -0.8889 26 1 3.8746 -0.6798 0.8911 27 1 3.6580 -3.1504 0.8907 28 1 3.6586 -3.1500 -0.8892 29 1 5.7154 -2.7179 -2.0870 30 1 5.6229 -1.0772 -1.4019 31 1 7.8469 -1.3693 -0.3669 32 1 7.9394 -1.6429 -2.1237 33 1 9.9041 -2.8276 -0.0761 34 1 9.9042 -4.4041 -0.9026 35 1 9.5119 -4.6009 -3.1779 36 1 8.8400 -3.1487 -3.9909 37 1 10.9886 -2.5137 -4.8784 38 1 11.0818 -4.2996 -4.9884 39 1 11.9264 -1.6255 -2.3492 40 1 11.9778 -3.0614 -1.2913 41 1 7.8470 -3.2958 1.1434 42 1 7.9396 -4.9365 0.4588 43 1 5.6230 -4.3707 1.1802 44 1 5.7152 -4.6444 -0.5764 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178470518.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:15 Heat of formation + Delta-G solvation = -60.813258 kcal Electronic energy + Delta-G solvation = -21091.162225 eV Core-core repulsion = 18042.228668 eV Total energy + Delta-G solvation = -3048.933557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.86940 -39.83507 -37.18338 -35.12746 -33.60451 -31.97389 -31.83614 -30.45526 -28.37779 -25.91340 -24.82211 -24.27524 -23.37068 -21.92900 -21.26395 -20.52791 -19.05388 -17.80897 -17.03509 -16.69255 -16.40713 -16.10821 -15.97803 -15.84592 -15.53496 -15.45007 -15.02457 -14.77098 -14.56246 -14.03875 -13.77288 -13.35401 -13.27778 -13.06151 -12.81444 -12.36745 -12.30199 -12.19605 -12.11632 -12.01266 -11.87972 -11.80082 -11.67791 -11.45420 -11.31167 -11.23114 -10.75939 -10.59547 -9.36616 -9.18964 -8.30792 -6.35237 1.35033 1.37820 1.50723 2.35806 2.82353 3.00429 3.04674 3.08486 3.66054 3.69966 3.89770 4.06601 4.09031 4.20442 4.27217 4.32903 4.37976 4.38665 4.45543 4.50273 4.57390 4.65243 4.69264 4.75905 4.83347 4.85003 4.89943 4.92791 4.95405 4.98135 5.02676 5.09391 5.17097 5.26994 5.28942 5.45866 5.61906 5.93850 6.00475 6.01634 6.18039 6.25066 6.30816 6.72498 7.29589 8.85998 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030304 B = 0.003627 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.739258 B = 7718.579968 C = 8161.712000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.952 3.048 4 H -0.264 1.264 5 H -0.249 1.249 6 H -0.283 1.283 7 C -0.534 4.534 8 H 0.031 0.969 9 C 0.003 3.997 10 C 0.084 3.916 11 N -0.549 5.549 12 C 0.054 3.946 13 C 0.064 3.936 14 N -0.542 5.542 15 C 0.070 3.930 16 C -0.123 4.123 17 H 0.089 0.911 18 C -0.133 4.133 19 C 0.041 3.959 20 O -0.403 6.403 21 C 0.051 3.949 22 C 0.066 3.934 23 C 0.056 3.944 24 H 0.267 0.733 25 H 0.018 0.982 26 H 0.020 0.980 27 H 0.061 0.939 28 H 0.016 0.984 29 H 0.032 0.968 30 H 0.071 0.929 31 H 0.036 0.964 32 H 0.096 0.904 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.038 0.962 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.217 -6.120 -4.868 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.172 1.172 6 H -0.209 1.209 7 C -0.572 4.572 8 H 0.050 0.950 9 C -0.035 4.035 10 C -0.044 4.044 11 N -0.274 5.274 12 C -0.075 4.075 13 C -0.064 4.064 14 N -0.267 5.267 15 C -0.057 4.057 16 C -0.141 4.141 17 H 0.107 0.893 18 C -0.171 4.171 19 C -0.035 4.035 20 O -0.323 6.323 21 C -0.026 4.026 22 C -0.062 4.062 23 C -0.072 4.072 24 H 0.076 0.924 25 H 0.036 0.964 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.034 0.966 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.114 0.886 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.118 0.882 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.056 0.944 42 H 0.115 0.885 43 H 0.100 0.900 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 25.279 -6.137 -4.872 26.466 hybrid contribution -0.853 0.769 0.086 1.152 sum 24.426 -5.368 -4.787 25.463 Atomic orbital electron populations 1.70063 1.08294 1.28248 1.52534 1.25989 0.95603 1.03516 0.93976 0.85630 0.79439 0.78127 0.79288 1.18940 1.17230 1.20871 1.21418 0.91954 0.93201 1.50662 0.95030 1.19413 0.93301 0.94254 0.96546 1.21790 0.85761 0.97683 0.99133 1.62214 1.07675 1.22648 1.34894 1.22202 0.95273 0.99885 0.90113 1.22173 0.93006 0.89697 1.01557 1.62191 1.07939 1.21900 1.34714 1.22150 0.86304 1.01203 0.96078 1.22652 0.95413 1.00508 0.95565 0.89278 1.23011 0.97938 1.00954 0.95152 1.23730 0.85541 1.02535 0.91715 1.88835 1.41225 1.72305 1.29916 1.23251 0.92892 0.95858 0.90598 1.22104 0.93335 1.00660 0.90098 1.22191 0.95244 0.88848 1.00949 0.92409 0.96404 0.96160 0.92005 0.96580 0.95003 0.91106 0.94598 0.88552 0.94195 0.89880 0.90705 0.90114 0.91555 0.88214 0.91536 0.89139 0.94363 0.88529 0.90035 0.94906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 2 C 0.01 0.36 5.47 84.65 0.46 0.82 16 3 Si 0.95 44.75 27.47 68.60 1.88 46.64 16 4 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 6 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 7 C -0.53 -31.33 9.66 25.60 0.25 -31.08 16 8 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 9 C 0.00 0.12 3.98 29.85 0.12 0.24 16 10 C 0.08 3.43 4.90 86.30 0.42 3.86 16 11 N -0.55 -18.37 4.71 -895.72 -4.22 -22.59 16 12 C 0.05 1.62 5.41 86.31 0.47 2.08 16 13 C 0.06 1.47 5.15 86.31 0.44 1.91 16 14 N -0.54 -11.26 4.63 -895.72 -4.15 -15.41 16 15 C 0.07 1.12 4.23 86.30 0.37 1.49 16 16 C -0.12 -1.80 2.60 -9.81 -0.03 -1.83 16 17 H 0.09 1.30 6.06 -2.39 -0.01 1.28 16 18 C -0.13 -2.00 6.53 31.89 0.21 -1.79 16 19 C 0.04 0.60 7.72 72.67 0.56 1.16 16 20 O -0.40 -7.64 11.52 -148.98 -1.72 -9.36 16 21 C 0.05 0.75 7.37 72.35 0.53 1.28 16 22 C 0.07 1.42 5.62 86.31 0.48 1.90 16 23 C 0.06 1.51 5.61 86.31 0.48 1.99 16 24 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 25 H 0.02 0.83 5.92 -2.39 -0.01 0.81 16 26 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 27 H 0.06 2.55 8.03 -2.39 -0.02 2.53 16 28 H 0.02 0.68 8.12 -2.39 -0.02 0.66 16 29 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 2.32 6.34 -2.38 -0.02 2.30 16 31 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.10 1.87 5.92 -2.39 -0.01 1.86 16 33 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.08 1.28 8.07 -2.38 -0.02 1.26 16 35 H 0.07 1.25 7.82 -2.38 -0.02 1.23 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.09 1.17 7.69 -2.39 -0.02 1.15 16 41 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.08 2.10 8.07 -2.39 -0.02 2.08 16 44 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -67.12 334.23 -2.24 -69.36 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.89 Total: 9.23 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 4.77 Total: -17.97 kcal Atomic # 7 Polarization: -89.83 SS G_CDS: -8.07 Total: -97.90 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -1.72 Total: -9.36 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.64 kcal Total: -67.12 -2.24 -69.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178470518.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.545 kcal (2) G-P(sol) polarization free energy of solvation -67.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds