Wall clock time and date at job start Mon Mar 30 2020 01:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.46960 * 111.00049 * 293.79812 * 11 10 9 13 13 C 1.53049 * 109.36654 * 176.81048 * 12 11 10 14 14 N 1.46956 * 109.36129 * 58.40475 * 13 12 11 15 15 C 1.46896 * 111.00257 * 176.81182 * 14 13 12 16 16 C 1.53000 * 109.47156 * 293.80244 * 15 14 13 17 17 H 1.09003 * 110.75568 * 57.01242 * 16 15 14 18 18 C 1.55302 * 110.85101 * 180.71165 * 16 15 14 19 19 C 1.54945 * 100.94262 * 152.32077 * 18 16 15 20 20 O 1.43643 * 105.13510 * 323.55480 * 19 18 16 21 21 C 1.43233 * 109.97285 * 24.43012 * 20 19 18 22 22 C 1.46963 * 110.88142 * 300.68007 * 14 13 12 23 23 C 1.46956 * 110.99873 * 170.00210 * 11 10 9 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 26 26 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 27 27 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 28 28 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 29 29 H 1.08998 * 109.49000 * 296.78589 * 12 11 10 30 30 H 1.09002 * 109.48569 * 56.84853 * 12 11 10 31 31 H 1.08995 * 109.48989 * 298.43746 * 13 12 11 32 32 H 1.09000 * 109.49219 * 178.37004 * 13 12 11 33 33 H 1.09001 * 109.47098 * 53.79686 * 15 14 13 34 34 H 1.09003 * 109.47826 * 173.79557 * 15 14 13 35 35 H 1.08996 * 111.12560 * 270.24017 * 18 16 15 36 36 H 1.09003 * 111.12446 * 34.39927 * 18 16 15 37 37 H 1.09003 * 110.30888 * 204.64355 * 19 18 16 38 38 H 1.08998 * 110.30978 * 82.47330 * 19 18 16 39 39 H 1.09009 * 109.83093 * 238.77217 * 21 20 19 40 40 H 1.08994 * 109.83185 * 117.80377 * 21 20 19 41 41 H 1.09004 * 109.48396 * 299.35249 * 22 14 13 42 42 H 1.08996 * 109.48601 * 179.29298 * 22 14 13 43 43 H 1.08996 * 109.48995 * 303.15132 * 23 11 10 44 44 H 1.08995 * 109.49012 * 63.22027 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 0.7677 -5.1139 1.2549 13 6 -0.0449 -6.4089 1.1827 14 7 0.8620 -7.5404 0.9445 15 6 0.1276 -8.8126 0.9438 16 6 -0.4259 -9.0826 2.3444 17 1 -1.0614 -8.2605 2.6738 18 6 -1.1947 -10.4315 2.3844 19 6 -1.0100 -10.8313 3.8699 20 8 0.3157 -10.3977 4.2131 21 6 0.7195 -9.3284 3.3499 22 6 1.6053 -7.3608 -0.3106 23 6 2.4178 -6.0658 -0.2383 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6247 -2.5571 -0.8897 27 1 2.8720 -3.6043 -0.8894 28 1 2.8720 -3.6043 0.8906 29 1 1.4686 -5.1703 2.0878 30 1 0.0941 -4.2697 1.4026 31 1 -0.7645 -6.3416 0.3668 32 1 -0.5743 -6.5590 2.1235 33 1 -0.6962 -8.7562 0.2323 34 1 0.8006 -9.6207 0.6571 35 1 -2.2483 -10.2904 2.1436 36 1 -0.7366 -11.1645 1.7204 37 1 -1.0962 -11.9119 3.9844 38 1 -1.7470 -10.3241 4.4926 39 1 1.6274 -9.6076 2.8151 40 1 0.8968 -8.4268 3.9361 41 1 0.9043 -7.3044 -1.1434 42 1 2.2788 -8.2050 -0.4583 43 1 2.9472 -5.9157 -1.1792 44 1 3.1374 -6.1331 0.5775 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178470530.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:18 Heat of formation + Delta-G solvation = -48.464499 kcal Electronic energy + Delta-G solvation = -20999.025317 eV Core-core repulsion = 17950.627242 eV Total energy + Delta-G solvation = -3048.398074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.95389 -38.82783 -35.94544 -33.56873 -32.52853 -30.83113 -30.12167 -29.15506 -26.67330 -24.35644 -23.62852 -23.15993 -22.44482 -20.70381 -20.48808 -19.49131 -17.07636 -16.77686 -16.18483 -16.02455 -15.14478 -14.79406 -14.73986 -14.37793 -14.17254 -14.11894 -13.69537 -13.52547 -13.26194 -12.66947 -12.39380 -12.35413 -11.98841 -11.78214 -11.49075 -11.35724 -11.20316 -11.12500 -11.04925 -10.81610 -10.74549 -10.40604 -10.14462 -10.00633 -9.69816 -9.64167 -8.56173 -8.41721 -8.29888 -7.82086 -6.35015 -4.03585 3.44624 3.46735 3.63815 3.65415 3.74571 4.26298 4.33814 4.46205 4.58767 4.66460 4.89002 4.92591 5.05272 5.11674 5.22992 5.24212 5.35414 5.42063 5.42843 5.46094 5.53259 5.54758 5.59261 5.62191 5.68392 5.81597 5.85503 5.99097 6.05513 6.08200 6.20151 6.29427 6.39344 6.79344 6.81602 6.94377 6.98681 7.29133 7.40684 7.66255 7.71279 8.25201 8.47752 8.90096 9.68664 11.06113 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037048 B = 0.003225 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.585016 B = 8679.003234 C = 8947.790623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.015 3.985 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.603 4.603 8 H 0.047 0.953 9 C 0.016 3.984 10 C 0.071 3.929 11 N -0.542 5.542 12 C 0.057 3.943 13 C 0.057 3.943 14 N -0.540 5.540 15 C 0.067 3.933 16 C -0.119 4.119 17 H 0.087 0.913 18 C -0.152 4.152 19 C 0.052 3.948 20 O -0.391 6.391 21 C 0.067 3.933 22 C 0.061 3.939 23 C 0.056 3.944 24 H 0.269 0.731 25 H 0.007 0.993 26 H 0.014 0.986 27 H 0.062 0.938 28 H 0.022 0.978 29 H 0.036 0.964 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.041 0.959 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.306 -21.635 3.413 21.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.188 4.188 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.642 4.642 8 H 0.065 0.935 9 C -0.021 4.021 10 C -0.056 4.056 11 N -0.267 5.267 12 C -0.071 4.071 13 C -0.071 4.071 14 N -0.265 5.265 15 C -0.061 4.061 16 C -0.138 4.138 17 H 0.105 0.895 18 C -0.190 4.190 19 C -0.025 4.025 20 O -0.310 6.310 21 C -0.009 4.009 22 C -0.067 4.067 23 C -0.072 4.072 24 H 0.079 0.921 25 H 0.025 0.975 26 H 0.033 0.967 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.360 -20.058 3.565 20.418 hybrid contribution 0.084 -1.548 -0.224 1.567 sum -1.276 -21.606 3.341 21.900 Atomic orbital electron populations 1.70775 1.06866 1.30641 1.46598 1.25830 0.96555 1.02656 0.93797 0.83547 0.74886 0.75362 0.76487 1.20758 1.21488 1.21450 1.22016 0.94238 0.92072 1.55889 0.93458 1.19211 0.94618 0.91933 0.96370 1.22162 0.96397 0.87813 0.99210 1.62273 1.27789 1.02618 1.34037 1.22142 0.97477 0.96596 0.90874 1.22238 0.94167 0.90031 1.00667 1.62176 1.27556 1.01791 1.34975 1.22027 0.96759 0.92377 0.94975 1.22767 0.97113 0.97812 0.96140 0.89495 1.23299 1.01399 0.96924 0.97402 1.23323 0.85060 0.99876 0.94198 1.88396 1.31528 1.53167 1.57956 1.23072 0.96960 0.89882 0.91024 1.22141 0.96898 0.97616 0.90082 1.22105 0.94198 0.90167 1.00778 0.92052 0.97459 0.96742 0.91970 0.95955 0.94597 0.89558 0.94018 0.90643 0.94380 0.90593 0.89930 0.90260 0.89945 0.92296 0.90869 0.91244 0.94078 0.90780 0.90652 0.94574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.29 13.65 55.43 0.76 -27.53 16 2 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 3 Si 1.07 25.55 29.90 -169.99 -5.08 20.47 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.60 -17.45 9.11 -34.44 -0.31 -17.76 16 8 H 0.05 1.34 7.74 -52.48 -0.41 0.94 16 9 C 0.02 0.42 4.22 -27.88 -0.12 0.30 16 10 C 0.07 1.53 4.90 -3.83 -0.02 1.51 16 11 N -0.54 -9.91 4.71 -234.47 -1.10 -11.02 16 12 C 0.06 0.97 5.41 -3.77 -0.02 0.95 16 13 C 0.06 0.77 5.42 -3.77 -0.02 0.75 16 14 N -0.54 -6.59 4.52 -234.47 -1.06 -7.65 16 15 C 0.07 0.65 4.28 -3.83 -0.02 0.63 16 16 C -0.12 -1.09 2.88 -88.67 -0.26 -1.35 16 17 H 0.09 0.83 6.46 -51.93 -0.34 0.50 16 18 C -0.15 -1.12 6.62 -24.48 -0.16 -1.28 16 19 C 0.05 0.43 7.78 38.18 0.30 0.73 16 20 O -0.39 -4.54 11.36 -35.23 -0.40 -4.94 16 21 C 0.07 0.71 7.23 37.88 0.27 0.99 16 22 C 0.06 0.76 5.61 -3.76 -0.02 0.74 16 23 C 0.06 0.84 5.61 -3.77 -0.02 0.82 16 24 H 0.27 8.32 7.22 -40.82 -0.29 8.03 16 25 H 0.01 0.20 6.36 -51.93 -0.33 -0.13 16 26 H 0.01 0.40 8.01 -51.93 -0.42 -0.02 16 27 H 0.06 1.33 8.03 -51.93 -0.42 0.91 16 28 H 0.02 0.49 8.12 -51.93 -0.42 0.07 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.61 6.34 -51.93 -0.33 1.29 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.92 6.31 -51.93 -0.33 0.59 16 33 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 34 H 0.08 0.68 7.96 -51.93 -0.41 0.26 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.54 8.04 -51.93 -0.42 0.13 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.79 7.76 -51.92 -0.40 0.39 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 43 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 337.71 15.07 5.09 5.09 Total: -1.00 -31.47 337.71 -10.24 -41.72 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -7.95 Total: -3.51 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -0.49 Total: -12.62 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: -1.41 Total: -46.20 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.40 Total: -4.94 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.08 Total: 20.47 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.47 -10.24 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178470530.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.749 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds