Wall clock time and date at job start Mon Mar 30 2020 01:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.46960 * 111.00049 * 293.79812 * 11 10 9 13 13 C 1.53049 * 109.36654 * 176.81048 * 12 11 10 14 14 N 1.46956 * 109.36129 * 58.40475 * 13 12 11 15 15 C 1.46896 * 111.00257 * 176.81182 * 14 13 12 16 16 C 1.53000 * 109.47156 * 293.80244 * 15 14 13 17 17 H 1.09003 * 110.75568 * 57.01242 * 16 15 14 18 18 C 1.55302 * 110.85101 * 180.71165 * 16 15 14 19 19 C 1.54945 * 100.94262 * 152.32077 * 18 16 15 20 20 O 1.43643 * 105.13510 * 323.55480 * 19 18 16 21 21 C 1.43233 * 109.97285 * 24.43012 * 20 19 18 22 22 C 1.46963 * 110.88142 * 300.68007 * 14 13 12 23 23 C 1.46956 * 110.99873 * 170.00210 * 11 10 9 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 26 26 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 27 27 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 28 28 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 29 29 H 1.08998 * 109.49000 * 296.78589 * 12 11 10 30 30 H 1.09002 * 109.48569 * 56.84853 * 12 11 10 31 31 H 1.08995 * 109.48989 * 298.43746 * 13 12 11 32 32 H 1.09000 * 109.49219 * 178.37004 * 13 12 11 33 33 H 1.09001 * 109.47098 * 53.79686 * 15 14 13 34 34 H 1.09003 * 109.47826 * 173.79557 * 15 14 13 35 35 H 1.08996 * 111.12560 * 270.24017 * 18 16 15 36 36 H 1.09003 * 111.12446 * 34.39927 * 18 16 15 37 37 H 1.09003 * 110.30888 * 204.64355 * 19 18 16 38 38 H 1.08998 * 110.30978 * 82.47330 * 19 18 16 39 39 H 1.09009 * 109.83093 * 238.77217 * 21 20 19 40 40 H 1.08994 * 109.83185 * 117.80377 * 21 20 19 41 41 H 1.09004 * 109.48396 * 299.35249 * 22 14 13 42 42 H 1.08996 * 109.48601 * 179.29298 * 22 14 13 43 43 H 1.08996 * 109.48995 * 303.15132 * 23 11 10 44 44 H 1.08995 * 109.49012 * 63.22027 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 0.7677 -5.1139 1.2549 13 6 -0.0449 -6.4089 1.1827 14 7 0.8620 -7.5404 0.9445 15 6 0.1276 -8.8126 0.9438 16 6 -0.4259 -9.0826 2.3444 17 1 -1.0614 -8.2605 2.6738 18 6 -1.1947 -10.4315 2.3844 19 6 -1.0100 -10.8313 3.8699 20 8 0.3157 -10.3977 4.2131 21 6 0.7195 -9.3284 3.3499 22 6 1.6053 -7.3608 -0.3106 23 6 2.4178 -6.0658 -0.2383 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6247 -2.5571 -0.8897 27 1 2.8720 -3.6043 -0.8894 28 1 2.8720 -3.6043 0.8906 29 1 1.4686 -5.1703 2.0878 30 1 0.0941 -4.2697 1.4026 31 1 -0.7645 -6.3416 0.3668 32 1 -0.5743 -6.5590 2.1235 33 1 -0.6962 -8.7562 0.2323 34 1 0.8006 -9.6207 0.6571 35 1 -2.2483 -10.2904 2.1436 36 1 -0.7366 -11.1645 1.7204 37 1 -1.0962 -11.9119 3.9844 38 1 -1.7470 -10.3241 4.4926 39 1 1.6274 -9.6076 2.8151 40 1 0.8968 -8.4268 3.9361 41 1 0.9043 -7.3044 -1.1434 42 1 2.2788 -8.2050 -0.4583 43 1 2.9472 -5.9157 -1.1792 44 1 3.1374 -6.1331 0.5775 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178470530.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:18 Heat of formation + Delta-G solvation = -70.700254 kcal Electronic energy + Delta-G solvation = -20999.989531 eV Core-core repulsion = 17950.627242 eV Total energy + Delta-G solvation = -3049.362289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84838 -39.91208 -37.27748 -35.47212 -33.63983 -32.01330 -31.51893 -30.26019 -28.00166 -25.88884 -24.92700 -24.57669 -23.17670 -22.41846 -21.35257 -20.69325 -18.95684 -17.83000 -17.23438 -16.95532 -16.28679 -16.00146 -15.78285 -15.66492 -15.55075 -15.48168 -15.29742 -14.72438 -14.29763 -14.16467 -13.87135 -13.53229 -13.31212 -12.91995 -12.67867 -12.54921 -12.40257 -12.30501 -12.18041 -12.09232 -11.93563 -11.83849 -11.78682 -11.42551 -11.39406 -10.73120 -10.54526 -10.47960 -9.44581 -9.26798 -8.71363 -6.41518 1.51848 1.60675 1.80104 2.54964 2.75692 2.95585 3.00117 3.14451 3.56035 3.70666 3.85699 3.94692 4.01432 4.11618 4.24595 4.27673 4.30600 4.36256 4.39661 4.43673 4.49807 4.57776 4.67226 4.69267 4.76513 4.82641 4.84974 4.87030 4.92319 4.96836 4.97347 5.00444 5.06050 5.22088 5.27960 5.39412 5.81935 5.92690 6.00437 6.08945 6.15202 6.17972 6.20447 6.55700 7.40998 8.69843 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037048 B = 0.003225 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.585016 B = 8679.003234 C = 8947.790623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.038 4.038 3 Si 1.119 2.881 4 H -0.282 1.282 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.622 4.622 8 H 0.051 0.949 9 C 0.023 3.977 10 C 0.087 3.913 11 N -0.551 5.551 12 C 0.059 3.941 13 C 0.069 3.931 14 N -0.545 5.545 15 C 0.071 3.929 16 C -0.116 4.116 17 H 0.081 0.919 18 C -0.142 4.142 19 C 0.044 3.956 20 O -0.415 6.415 21 C 0.067 3.933 22 C 0.066 3.934 23 C 0.055 3.945 24 H 0.255 0.745 25 H -0.010 1.010 26 H -0.012 1.012 27 H 0.064 0.936 28 H 0.017 0.983 29 H 0.030 0.970 30 H 0.058 0.942 31 H 0.035 0.965 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.038 0.962 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.684 -23.123 3.085 23.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.236 4.236 3 Si 0.940 3.060 4 H -0.208 1.208 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.660 4.660 8 H 0.069 0.931 9 C -0.014 4.014 10 C -0.041 4.041 11 N -0.277 5.277 12 C -0.069 4.069 13 C -0.059 4.059 14 N -0.270 5.270 15 C -0.056 4.056 16 C -0.135 4.135 17 H 0.099 0.901 18 C -0.180 4.180 19 C -0.032 4.032 20 O -0.336 6.336 21 C -0.009 4.009 22 C -0.061 4.061 23 C -0.073 4.073 24 H 0.064 0.936 25 H 0.008 0.992 26 H 0.007 0.993 27 H 0.083 0.917 28 H 0.035 0.965 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.121 0.879 43 H 0.102 0.898 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -0.738 -21.597 3.237 21.850 hybrid contribution -0.127 -1.162 -0.093 1.172 sum -0.864 -22.758 3.144 22.991 Atomic orbital electron populations 1.70912 1.07959 1.29835 1.48603 1.27483 0.96603 1.06887 0.92585 0.82920 0.74120 0.70903 0.78082 1.20784 1.19389 1.19264 1.22455 0.94708 0.93425 1.55444 0.93104 1.19067 0.94845 0.93333 0.94204 1.21808 0.95070 0.88205 0.98986 1.62208 1.28315 1.02396 1.34734 1.22097 0.97061 0.97630 0.90162 1.22069 0.93590 0.88997 1.01279 1.62174 1.27632 1.02246 1.34963 1.22069 0.97054 0.91163 0.95359 1.22718 0.96674 0.98767 0.95348 0.90053 1.23277 1.02154 0.95772 0.96822 1.23542 0.83766 1.00896 0.95002 1.88370 1.33204 1.53365 1.58621 1.23026 0.97553 0.89232 0.91081 1.22128 0.97026 0.97007 0.89988 1.22227 0.94091 0.89976 1.01036 0.93585 0.99150 0.99346 0.91742 0.96495 0.95191 0.92338 0.94694 0.89133 0.93735 0.89075 0.88344 0.89261 0.88401 0.91955 0.91051 0.92716 0.94413 0.87895 0.89824 0.94753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.35 13.65 21.45 0.29 -59.05 16 2 C -0.04 -2.26 5.46 84.65 0.46 -1.80 16 3 Si 1.12 50.93 29.90 68.60 2.05 52.98 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.62 -36.54 9.11 25.60 0.23 -36.31 16 8 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 9 C 0.02 1.24 4.22 29.85 0.13 1.37 16 10 C 0.09 3.81 4.90 86.30 0.42 4.24 16 11 N -0.55 -20.28 4.71 -895.74 -4.22 -24.50 16 12 C 0.06 2.04 5.41 86.31 0.47 2.51 16 13 C 0.07 1.83 5.42 86.31 0.47 2.29 16 14 N -0.55 -12.26 4.52 -895.72 -4.05 -16.32 16 15 C 0.07 1.18 4.28 86.30 0.37 1.55 16 16 C -0.12 -1.88 2.88 -9.53 -0.03 -1.91 16 17 H 0.08 1.42 6.46 -2.39 -0.02 1.40 16 18 C -0.14 -1.69 6.62 32.05 0.21 -1.48 16 19 C 0.04 0.64 7.78 72.65 0.56 1.21 16 20 O -0.42 -9.15 11.36 -148.98 -1.69 -10.85 16 21 C 0.07 1.35 7.23 72.45 0.52 1.88 16 22 C 0.07 1.50 5.61 86.31 0.48 1.98 16 23 C 0.05 1.56 5.61 86.31 0.48 2.05 16 24 H 0.25 16.43 7.22 -92.71 -0.67 15.76 16 25 H -0.01 -0.55 6.36 -2.39 -0.02 -0.57 16 26 H -0.01 -0.69 8.01 -2.38 -0.02 -0.71 16 27 H 0.06 2.77 8.03 -2.39 -0.02 2.75 16 28 H 0.02 0.75 8.12 -2.39 -0.02 0.73 16 29 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 2.32 6.34 -2.39 -0.02 2.30 16 31 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 2.12 6.31 -2.39 -0.02 2.11 16 33 H 0.04 0.72 8.12 -2.39 -0.02 0.70 16 34 H 0.09 1.29 7.96 -2.39 -0.02 1.27 16 35 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 0.92 8.04 -2.39 -0.02 0.90 16 37 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 1.44 7.76 -2.38 -0.02 1.42 16 40 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.10 1.79 8.07 -2.39 -0.02 1.77 16 43 H 0.08 2.24 8.07 -2.39 -0.02 2.23 16 44 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -68.82 337.71 -1.79 -70.60 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.04 Total: 9.56 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: 4.79 Total: -22.43 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -7.98 Total: -99.87 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -1.69 Total: -10.85 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 2.05 Total: 52.98 kcal Total: -68.82 -1.79 -70.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178470530.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.095 kcal (2) G-P(sol) polarization free energy of solvation -68.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds