Wall clock time and date at job start Mon Mar 30 2020 00:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46625 * 2 1 4 4 C 1.53001 * 109.47167 * 240.00201 * 2 1 3 5 5 C 1.52995 * 109.47005 * 299.99900 * 4 2 1 6 6 C 1.53001 * 109.47246 * 299.99743 * 5 4 2 7 7 C 1.53001 * 109.46909 * 60.00198 * 6 5 4 8 8 C 1.53001 * 109.47457 * 119.99763 * 2 1 3 9 9 H 1.09000 * 109.47113 * 180.02562 * 8 2 1 10 10 C 1.52998 * 109.46931 * 300.00398 * 8 2 1 11 11 C 1.50700 * 109.46542 * 184.99837 * 10 8 2 12 12 O 1.20821 * 120.00485 * 359.97438 * 11 10 8 13 13 O 1.34233 * 119.99946 * 180.02562 * 11 10 8 14 14 C 1.45196 * 117.00244 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47149 * 180.02562 * 14 13 11 16 16 C 1.50706 * 109.47348 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99758 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00102 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47483 * 269.99808 * 20 18 16 22 22 H 1.48499 * 109.47134 * 30.00322 * 20 18 16 23 23 H 1.48507 * 109.46904 * 150.00145 * 20 18 16 24 24 H 1.08999 * 109.47093 * 299.99807 * 1 2 3 25 25 H 1.09003 * 109.47245 * 59.99924 * 1 2 3 26 26 H 1.09006 * 109.46619 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46809 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.47395 * 299.99942 * 3 2 1 29 29 H 1.08999 * 109.47227 * 60.00275 * 3 2 1 30 30 H 1.09003 * 109.47140 * 59.99811 * 4 2 1 31 31 H 1.09000 * 109.47326 * 179.97438 * 4 2 1 32 32 H 1.08995 * 109.47589 * 60.00088 * 5 4 2 33 33 H 1.08999 * 109.47048 * 179.97438 * 5 4 2 34 34 H 1.09001 * 109.47632 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.47108 * 300.00640 * 6 5 4 36 36 H 1.09003 * 109.47151 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47326 * 60.00173 * 7 6 5 38 38 H 1.08997 * 109.47202 * 65.00414 * 10 8 2 39 39 H 1.08997 * 109.47039 * 304.99368 * 10 8 2 40 40 H 1.09000 * 109.47236 * 60.00122 * 14 13 11 41 41 H 1.09002 * 109.47072 * 299.99703 * 14 13 11 42 42 H 1.09001 * 109.47671 * 60.00226 * 15 14 13 43 43 H 1.09006 * 109.47297 * 299.99945 * 15 14 13 44 44 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5300 -2.1637 -1.2493 6 6 2.0401 -2.8850 -0.0001 7 6 1.5301 -2.1638 1.2492 8 6 2.0401 -0.7212 1.2492 9 1 3.1301 -0.7208 1.2494 10 6 1.5300 0.0001 2.4984 11 6 2.1310 -0.6353 3.7257 12 8 2.8890 -1.5693 3.6129 13 8 1.8234 -0.1641 4.9444 14 6 2.4387 -0.8250 6.0814 15 6 1.9718 -0.1547 7.3750 16 6 2.6110 -0.8402 8.5551 17 1 3.2828 -1.6712 8.3981 18 6 2.3382 -0.4066 9.8351 19 7 1.5199 0.6050 10.0264 20 14 3.1300 -1.2568 11.2979 21 1 2.2585 -2.3687 11.7555 22 1 4.4542 -1.7977 10.8989 23 1 3.3068 -0.2798 12.4022 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6766 -0.2074 -2.1393 31 1 3.1300 -0.7208 -1.2495 32 1 0.4401 -2.1638 -1.2493 33 1 1.8930 -2.6773 -2.1395 34 1 1.6764 -3.9125 0.0002 35 1 3.1300 -2.8849 -0.0001 36 1 1.8938 -2.6774 2.1392 37 1 0.4401 -2.1638 1.2492 38 1 0.4438 -0.0770 2.5444 39 1 1.8184 1.0503 2.4548 40 1 3.5232 -0.7483 6.0030 41 1 2.1485 -1.8756 6.0918 42 1 0.8874 -0.2317 7.4533 43 1 2.2617 0.8961 7.3649 44 1 1.1084 1.0463 9.2668 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178534792.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:57 Heat of formation + Delta-G solvation = -153.863571 kcal Electronic energy + Delta-G solvation = -21095.468235 eV Core-core repulsion = 18010.206963 eV Total energy + Delta-G solvation = -3085.261272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.86749 -40.45994 -37.78677 -35.84108 -34.42991 -33.42703 -32.11559 -29.19864 -28.16912 -27.03676 -26.33600 -23.92237 -23.08349 -22.10224 -21.38945 -19.30486 -19.04426 -18.35858 -17.74403 -17.46861 -16.18236 -15.87398 -15.68117 -15.47842 -15.31626 -15.06640 -14.77823 -14.33285 -13.90679 -13.85822 -13.57904 -13.45372 -13.24455 -12.87471 -12.73521 -12.57510 -12.46450 -12.29242 -12.17173 -12.13291 -11.94093 -11.90788 -11.66840 -11.58576 -11.57071 -11.02980 -10.93694 -10.80264 -10.70428 -10.62135 -8.79587 -6.51987 1.16194 1.51795 1.61358 1.72562 1.80474 2.53541 3.07500 3.51506 3.64782 3.70925 3.89854 4.03542 4.08848 4.09912 4.19130 4.28525 4.39445 4.45223 4.46947 4.52260 4.58608 4.61135 4.74172 4.81610 4.88356 4.96833 5.00035 5.06412 5.11551 5.17020 5.18761 5.19864 5.24826 5.29263 5.29488 5.42702 5.46335 5.54842 5.61007 5.71762 5.80205 6.04865 6.43260 6.71879 7.30381 8.62521 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.040533 B = 0.003257 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.628952 B = 8594.648248 C = 8969.503290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.053 4.053 3 C -0.149 4.149 4 C -0.105 4.105 5 C -0.118 4.118 6 C -0.115 4.115 7 C -0.125 4.125 8 C -0.058 4.058 9 H 0.061 0.939 10 C -0.108 4.108 11 C 0.449 3.551 12 O -0.537 6.537 13 O -0.371 6.371 14 C 0.097 3.903 15 C 0.015 3.985 16 C -0.627 4.627 17 H 0.055 0.945 18 C -0.031 4.031 19 N -0.930 5.930 20 Si 1.125 2.875 21 H -0.269 1.269 22 H -0.269 1.269 23 H -0.278 1.278 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.004 0.996 43 H 0.004 0.996 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.842 -1.351 -25.141 25.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.053 4.053 3 C -0.206 4.206 4 C -0.143 4.143 5 C -0.155 4.155 6 C -0.153 4.153 7 C -0.162 4.162 8 C -0.077 4.077 9 H 0.079 0.921 10 C -0.145 4.145 11 C 0.294 3.706 12 O -0.427 6.427 13 O -0.288 6.288 14 C 0.024 3.976 15 C -0.022 4.022 16 C -0.665 4.665 17 H 0.073 0.927 18 C -0.230 4.230 19 N -0.566 5.566 20 Si 0.945 3.055 21 H -0.195 1.195 22 H -0.194 1.194 23 H -0.204 1.204 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.522 -1.607 -23.512 23.616 hybrid contribution 0.074 -0.087 -1.286 1.291 sum -1.447 -1.695 -24.798 24.898 Atomic orbital electron populations 1.22070 0.93735 1.02413 1.02489 1.20489 0.96404 0.95048 0.93363 1.21993 1.00954 0.94996 1.02664 1.21573 1.00295 0.95365 0.97020 1.21577 1.01344 0.95530 0.97043 1.21471 1.00210 0.98962 0.94621 1.21747 1.00840 0.95225 0.98418 1.20973 0.99941 0.94670 0.92078 0.92077 1.21818 1.03339 1.02161 0.87182 1.24726 0.78765 0.81451 0.85610 1.90588 1.35638 1.28992 1.87482 1.86516 1.66936 1.59210 1.16103 1.22910 0.96425 0.95779 0.82480 1.19152 0.96142 0.95862 0.91088 1.22255 1.31529 1.19524 0.93165 0.92683 1.27538 0.95526 0.95927 1.03964 1.70877 1.29174 1.21856 1.34674 0.82843 0.75835 0.75116 0.71715 1.19464 1.19400 1.20361 0.92284 0.91435 0.91981 0.93025 0.91206 0.92085 0.90437 0.92581 0.90996 0.91337 0.92005 0.93123 0.93516 0.91125 0.85920 0.85785 0.92518 0.92487 0.97769 0.97784 0.93219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 7.43 71.98 0.53 -1.42 16 2 C -0.05 -0.79 0.54 -52.18 -0.03 -0.82 16 3 C -0.15 -2.03 8.13 71.98 0.59 -1.44 16 4 C -0.11 -1.44 4.73 30.59 0.14 -1.29 16 5 C -0.12 -1.66 5.65 30.59 0.17 -1.48 16 6 C -0.12 -2.16 5.92 30.59 0.18 -1.98 16 7 C -0.12 -2.80 4.67 30.60 0.14 -2.65 16 8 C -0.06 -1.21 1.14 -10.79 -0.01 -1.23 16 9 H 0.06 1.51 7.96 -2.39 -0.02 1.49 16 10 C -0.11 -2.48 4.57 29.85 0.14 -2.35 16 11 C 0.45 15.48 7.68 71.24 0.55 16.03 16 12 O -0.54 -21.12 13.72 21.98 0.30 -20.82 16 13 O -0.37 -15.11 10.22 -51.44 -0.53 -15.64 16 14 C 0.10 4.54 5.40 71.98 0.39 4.93 16 15 C 0.01 0.80 4.66 29.85 0.14 0.94 16 16 C -0.63 -36.61 9.11 25.60 0.23 -36.37 16 17 H 0.05 3.13 7.74 -2.91 -0.02 3.10 16 18 C -0.03 -1.82 5.46 84.65 0.46 -1.36 16 19 N -0.93 -57.66 13.65 21.45 0.29 -57.36 16 20 Si 1.13 50.19 29.90 68.60 2.05 52.24 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 24 H 0.06 0.77 6.54 -2.39 -0.02 0.75 16 25 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.83 4.81 -2.38 -0.01 0.82 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.82 6.32 -2.39 -0.02 0.81 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.93 6.43 -2.39 -0.02 0.91 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.05 1.37 5.96 -2.39 -0.01 1.36 16 37 H 0.07 1.41 6.43 -2.39 -0.02 1.39 16 38 H 0.12 2.40 6.71 -2.39 -0.02 2.38 16 39 H 0.12 2.41 6.17 -2.39 -0.01 2.40 16 40 H 0.06 2.64 8.13 -2.39 -0.02 2.62 16 41 H 0.06 2.65 8.13 -2.39 -0.02 2.63 16 42 H 0.00 0.23 8.01 -2.39 -0.02 0.21 16 43 H 0.00 0.22 8.01 -2.38 -0.02 0.20 16 44 H 0.26 16.21 7.22 -92.71 -0.67 15.54 16 Total: -1.00 -67.91 333.61 6.81 -61.10 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.06 Total: 10.97 kcal Atomic # 6 Polarization: -34.12 SS G_CDS: 3.63 Total: -30.49 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: 0.29 Total: -57.36 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.22 Total: -36.45 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 2.05 Total: 52.24 kcal Total: -67.91 6.81 -61.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178534792.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.762 kcal (2) G-P(sol) polarization free energy of solvation -67.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds