Wall clock time and date at job start Mon Mar 30 2020 00:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47382 * 2 1 4 4 C 1.53005 * 109.47003 * 239.99669 * 2 1 3 5 5 C 1.53008 * 109.46858 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47168 * 59.99888 * 5 4 2 7 7 C 1.52995 * 109.47268 * 300.00219 * 6 5 4 8 8 C 1.52995 * 109.47350 * 59.99989 * 7 6 5 9 9 H 1.09001 * 109.47666 * 60.00136 * 8 7 6 10 10 C 1.53005 * 109.47341 * 179.97438 * 8 7 6 11 11 C 1.50703 * 109.47035 * 295.00065 * 10 8 7 12 12 O 1.20821 * 119.99879 * 359.97438 * 11 10 8 13 13 O 1.34222 * 119.99985 * 179.97438 * 11 10 8 14 14 C 1.45200 * 117.00094 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47003 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.46866 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99963 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00270 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99835 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00496 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47092 * 90.00048 * 20 18 16 22 22 H 1.48498 * 109.47340 * 210.00299 * 20 18 16 23 23 H 1.48501 * 109.47391 * 330.00372 * 20 18 16 24 24 H 1.08999 * 109.47240 * 300.00158 * 1 2 3 25 25 H 1.08998 * 109.47377 * 60.00088 * 1 2 3 26 26 H 1.09004 * 109.47438 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47273 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47005 * 299.99535 * 3 2 1 29 29 H 1.08999 * 109.47062 * 59.99733 * 3 2 1 30 30 H 1.08999 * 109.46993 * 299.99694 * 4 2 1 31 31 H 1.08997 * 109.46867 * 60.00479 * 4 2 1 32 32 H 1.08999 * 109.46621 * 179.97438 * 5 4 2 33 33 H 1.09002 * 109.46689 * 300.00030 * 5 4 2 34 34 H 1.09004 * 109.46605 * 59.99998 * 6 5 4 35 35 H 1.08996 * 109.47269 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47127 * 299.99459 * 7 6 5 37 37 H 1.09002 * 109.47285 * 180.02562 * 7 6 5 38 38 H 1.08994 * 109.47204 * 174.99835 * 10 8 7 39 39 H 1.09006 * 109.46916 * 54.99459 * 10 8 7 40 40 H 1.08993 * 109.47475 * 60.00347 * 14 13 11 41 41 H 1.09000 * 109.47147 * 300.00141 * 14 13 11 42 42 H 1.09000 * 109.47050 * 299.99913 * 15 14 13 43 43 H 1.09001 * 109.46801 * 60.00026 * 15 14 13 44 44 H 0.96992 * 120.00038 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5694 -0.7221 1.2496 8 6 2.0395 -0.7216 1.2493 9 1 1.6757 -1.7491 1.2491 10 6 1.5294 -0.0009 2.4988 11 6 1.9276 -0.7800 3.7258 12 8 2.5545 -1.8066 3.6125 13 8 1.5858 -0.3335 4.9446 14 6 2.0023 -1.1353 6.0812 15 6 1.5249 -0.4727 7.3751 16 6 1.9567 -1.3052 8.5547 17 1 2.5153 -2.2160 8.3972 18 6 1.6385 -0.9042 9.8349 19 7 0.9578 0.2047 10.0266 20 14 2.1731 -1.9365 11.2970 21 1 3.5124 -1.4884 11.7561 22 1 1.1925 -1.7768 12.4007 23 1 2.2395 -3.3650 10.8968 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6766 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.9333 -1.2362 -2.1386 33 1 3.9336 0.3057 -1.2487 34 1 3.7157 -2.4710 0.0002 35 1 5.1694 -1.4442 0.0004 36 1 3.9332 0.3054 1.2498 37 1 3.9328 -1.2359 2.1396 38 1 0.4432 0.0777 2.4550 39 1 1.9645 0.9975 2.5454 40 1 3.0894 -1.2130 6.0922 41 1 1.5676 -2.1317 6.0018 42 1 1.9593 0.5238 7.4547 43 1 0.4377 -0.3953 7.3639 44 1 0.7343 0.4870 10.9272 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178534801.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:00 Heat of formation + Delta-G solvation = -134.057181 kcal Electronic energy + Delta-G solvation = -21059.392062 eV Core-core repulsion = 17974.989659 eV Total energy + Delta-G solvation = -3084.402403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.61088 -39.26647 -36.07895 -33.63812 -33.31871 -32.44711 -30.30409 -28.22022 -27.49487 -26.07201 -24.85193 -22.57221 -21.27306 -20.87914 -20.12115 -18.32121 -17.30626 -16.25127 -16.12743 -15.79224 -15.35527 -14.80927 -14.56342 -14.36850 -14.24673 -13.70352 -13.32986 -13.01366 -12.66995 -12.42882 -12.37185 -12.07626 -12.00445 -11.77761 -11.58195 -11.39286 -11.18278 -11.13280 -11.02866 -10.81622 -10.73248 -10.67315 -10.31371 -10.24358 -10.03230 -9.88289 -9.60605 -9.50739 -9.27583 -8.43825 -6.09920 -4.14234 2.65543 3.25392 3.28801 3.35121 3.40406 4.39106 4.42039 4.49362 4.57489 4.90759 4.93648 5.07995 5.15109 5.19322 5.26567 5.28496 5.37513 5.43733 5.49328 5.51715 5.54657 5.67121 5.73370 5.76588 5.79331 5.90922 5.92584 6.01398 6.05272 6.10152 6.12154 6.12945 6.19083 6.26380 6.42087 6.47668 6.66270 7.09360 7.57694 7.63630 7.88045 8.22130 8.32794 8.91429 9.50134 11.01639 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.040605 B = 0.003245 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.404638 B = 8627.568713 C = 9001.137750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.059 4.059 3 C -0.150 4.150 4 C -0.106 4.106 5 C -0.122 4.122 6 C -0.116 4.116 7 C -0.125 4.125 8 C -0.062 4.062 9 H 0.079 0.921 10 C -0.117 4.117 11 C 0.453 3.547 12 O -0.517 6.517 13 O -0.360 6.360 14 C 0.075 3.925 15 C 0.024 3.976 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.900 3.100 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.526 1.421 -23.259 23.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.059 4.059 3 C -0.207 4.207 4 C -0.143 4.143 5 C -0.159 4.159 6 C -0.153 4.153 7 C -0.162 4.162 8 C -0.080 4.080 9 H 0.097 0.903 10 C -0.155 4.155 11 C 0.297 3.703 12 O -0.406 6.406 13 O -0.276 6.276 14 C 0.003 3.997 15 C -0.013 4.013 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.627 1.223 -23.096 23.186 hybrid contribution 0.284 -0.608 0.958 1.170 sum 1.911 0.615 -22.138 22.229 Atomic orbital electron populations 1.21979 0.94641 1.01966 1.01925 1.20525 0.95185 0.95557 0.94639 1.22055 1.01645 0.95216 1.01734 1.21565 0.95599 1.00361 0.96798 1.21604 0.95680 1.00845 0.97806 1.21483 0.99938 0.99531 0.94394 1.21782 0.94576 1.00802 0.99073 1.20974 0.96127 0.99515 0.91409 0.90283 1.21610 1.03850 1.00240 0.89753 1.23632 0.76595 0.84341 0.85763 1.90584 1.37749 1.24812 1.87504 1.86527 1.71957 1.53704 1.15444 1.23596 0.99150 0.93948 0.83025 1.19165 0.97765 0.96817 0.87538 1.20992 1.36248 1.08672 0.90535 0.92285 1.24986 0.94906 0.95220 0.99065 1.69976 1.38607 1.22365 1.21936 0.86472 0.78418 0.80584 0.81841 1.20476 1.21047 1.19718 0.92069 0.92678 0.92573 0.91884 0.92863 0.92289 0.92014 0.92118 0.92460 0.91781 0.92071 0.92308 0.92148 0.90020 0.87771 0.87901 0.92443 0.92448 0.95407 0.95403 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.13 37.16 0.30 -0.90 16 2 C -0.06 -0.51 0.54 -154.51 -0.08 -0.60 16 3 C -0.15 -1.20 7.43 37.16 0.28 -0.93 16 4 C -0.11 -0.86 4.73 -26.72 -0.13 -0.98 16 5 C -0.12 -1.00 5.65 -26.73 -0.15 -1.15 16 6 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 7 C -0.13 -1.43 4.67 -26.74 -0.12 -1.56 16 8 C -0.06 -0.68 1.14 -90.62 -0.10 -0.78 16 9 H 0.08 0.98 7.95 -51.93 -0.41 0.57 16 10 C -0.12 -1.43 4.57 -27.88 -0.13 -1.56 16 11 C 0.45 7.82 7.67 36.01 0.28 8.10 16 12 O -0.52 -9.97 13.72 -18.75 -0.26 -10.23 16 13 O -0.36 -7.29 10.22 -39.24 -0.40 -7.70 16 14 C 0.08 1.71 5.40 37.16 0.20 1.91 16 15 C 0.02 0.64 5.35 -27.88 -0.15 0.50 16 16 C -0.53 -14.97 9.11 -34.44 -0.31 -15.29 16 17 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 20 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 H 0.06 0.50 6.32 -51.93 -0.33 0.17 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.52 4.81 -51.93 -0.25 0.27 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.48 6.55 -51.93 -0.34 0.14 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.51 6.43 -51.93 -0.33 0.17 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 37 H 0.08 1.17 5.96 -51.93 -0.31 0.86 16 38 H 0.10 1.12 6.17 -51.93 -0.32 0.80 16 39 H 0.10 1.12 6.71 -51.93 -0.35 0.77 16 40 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 41 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 334.94 15.07 5.05 5.05 Total: -1.00 -30.54 334.94 -7.87 -38.40 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -7.59 Total: -3.31 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -0.38 Total: -12.91 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: 0.74 Total: -25.82 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.66 Total: -17.93 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.54 -7.87 -38.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178534801.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.653 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds