Wall clock time and date at job start Mon Mar 30 2020 00:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47382 * 2 1 4 4 C 1.53005 * 109.47003 * 239.99669 * 2 1 3 5 5 C 1.53008 * 109.46858 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47168 * 59.99888 * 5 4 2 7 7 C 1.52995 * 109.47268 * 300.00219 * 6 5 4 8 8 C 1.52995 * 109.47350 * 59.99989 * 7 6 5 9 9 H 1.09001 * 109.47666 * 60.00136 * 8 7 6 10 10 C 1.53005 * 109.47341 * 179.97438 * 8 7 6 11 11 C 1.50703 * 109.47035 * 295.00065 * 10 8 7 12 12 O 1.20821 * 119.99879 * 359.97438 * 11 10 8 13 13 O 1.34222 * 119.99985 * 179.97438 * 11 10 8 14 14 C 1.45200 * 117.00094 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47003 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.46866 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99963 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00270 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99835 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00496 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47092 * 90.00048 * 20 18 16 22 22 H 1.48498 * 109.47340 * 210.00299 * 20 18 16 23 23 H 1.48501 * 109.47391 * 330.00372 * 20 18 16 24 24 H 1.08999 * 109.47240 * 300.00158 * 1 2 3 25 25 H 1.08998 * 109.47377 * 60.00088 * 1 2 3 26 26 H 1.09004 * 109.47438 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47273 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47005 * 299.99535 * 3 2 1 29 29 H 1.08999 * 109.47062 * 59.99733 * 3 2 1 30 30 H 1.08999 * 109.46993 * 299.99694 * 4 2 1 31 31 H 1.08997 * 109.46867 * 60.00479 * 4 2 1 32 32 H 1.08999 * 109.46621 * 179.97438 * 5 4 2 33 33 H 1.09002 * 109.46689 * 300.00030 * 5 4 2 34 34 H 1.09004 * 109.46605 * 59.99998 * 6 5 4 35 35 H 1.08996 * 109.47269 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47127 * 299.99459 * 7 6 5 37 37 H 1.09002 * 109.47285 * 180.02562 * 7 6 5 38 38 H 1.08994 * 109.47204 * 174.99835 * 10 8 7 39 39 H 1.09006 * 109.46916 * 54.99459 * 10 8 7 40 40 H 1.08993 * 109.47475 * 60.00347 * 14 13 11 41 41 H 1.09000 * 109.47147 * 300.00141 * 14 13 11 42 42 H 1.09000 * 109.47050 * 299.99913 * 15 14 13 43 43 H 1.09001 * 109.46801 * 60.00026 * 15 14 13 44 44 H 0.96992 * 120.00038 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5694 -0.7221 1.2496 8 6 2.0395 -0.7216 1.2493 9 1 1.6757 -1.7491 1.2491 10 6 1.5294 -0.0009 2.4988 11 6 1.9276 -0.7800 3.7258 12 8 2.5545 -1.8066 3.6125 13 8 1.5858 -0.3335 4.9446 14 6 2.0023 -1.1353 6.0812 15 6 1.5249 -0.4727 7.3751 16 6 1.9567 -1.3052 8.5547 17 1 2.5153 -2.2160 8.3972 18 6 1.6385 -0.9042 9.8349 19 7 0.9578 0.2047 10.0266 20 14 2.1731 -1.9365 11.2970 21 1 3.5124 -1.4884 11.7561 22 1 1.1925 -1.7768 12.4007 23 1 2.2395 -3.3650 10.8968 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6766 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.9333 -1.2362 -2.1386 33 1 3.9336 0.3057 -1.2487 34 1 3.7157 -2.4710 0.0002 35 1 5.1694 -1.4442 0.0004 36 1 3.9332 0.3054 1.2498 37 1 3.9328 -1.2359 2.1396 38 1 0.4432 0.0777 2.4550 39 1 1.9645 0.9975 2.5454 40 1 3.0894 -1.2130 6.0922 41 1 1.5676 -2.1317 6.0018 42 1 1.9593 0.5238 7.4547 43 1 0.4377 -0.3953 7.3639 44 1 0.7343 0.4870 10.9272 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178534801.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:59 Heat of formation + Delta-G solvation = -149.157289 kcal Electronic energy + Delta-G solvation = -21060.046852 eV Core-core repulsion = 17974.989659 eV Total energy + Delta-G solvation = -3085.057193 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.79427 -40.40248 -37.66658 -35.46087 -34.39545 -33.38790 -32.30411 -29.19992 -28.14351 -27.21647 -26.49396 -23.74949 -22.81607 -22.05267 -21.33246 -19.23059 -18.83333 -18.09501 -17.64217 -17.31092 -16.52105 -16.13469 -15.76086 -15.28896 -15.22925 -14.85036 -14.53466 -14.39334 -13.95131 -13.78283 -13.49962 -13.17655 -13.00394 -12.88042 -12.71381 -12.62311 -12.55832 -12.44834 -12.25673 -12.13018 -11.91256 -11.82255 -11.62475 -11.53348 -11.46306 -11.34781 -10.99963 -10.77136 -10.68828 -10.62702 -8.28548 -6.42079 1.24006 1.39879 1.41910 1.53074 1.82742 2.39467 3.05631 3.57085 3.69596 3.74930 3.95423 4.11905 4.20597 4.20950 4.26116 4.33380 4.43349 4.48564 4.51617 4.61909 4.64928 4.68892 4.78300 4.84656 4.91430 5.01659 5.07980 5.14353 5.20743 5.21845 5.27564 5.28849 5.31931 5.32692 5.44699 5.45578 5.51156 5.58120 5.63136 5.72277 5.78445 6.05069 6.70662 6.81150 7.27826 8.84140 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.040605 B = 0.003245 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.404638 B = 8627.568713 C = 9001.137750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.053 4.053 3 C -0.150 4.150 4 C -0.105 4.105 5 C -0.118 4.118 6 C -0.115 4.115 7 C -0.125 4.125 8 C -0.058 4.058 9 H 0.061 0.939 10 C -0.109 4.109 11 C 0.449 3.551 12 O -0.538 6.538 13 O -0.370 6.370 14 C 0.091 3.909 15 C 0.031 3.969 16 C -0.552 4.552 17 H 0.064 0.936 18 C 0.006 3.994 19 N -0.927 5.927 20 Si 0.974 3.026 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.264 1.264 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.006 0.994 43 H 0.006 0.994 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.656 1.600 -24.491 24.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.053 4.053 3 C -0.207 4.207 4 C -0.142 4.142 5 C -0.155 4.155 6 C -0.153 4.153 7 C -0.162 4.162 8 C -0.076 4.076 9 H 0.079 0.921 10 C -0.146 4.146 11 C 0.294 3.706 12 O -0.429 6.429 13 O -0.287 6.287 14 C 0.018 3.982 15 C -0.006 4.006 16 C -0.590 4.590 17 H 0.082 0.918 18 C -0.193 4.193 19 N -0.565 5.565 20 Si 0.797 3.203 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.188 1.188 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.025 0.975 43 H 0.024 0.976 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.760 1.401 -24.356 24.459 hybrid contribution 0.242 -0.648 1.273 1.449 sum 2.002 0.753 -23.083 23.182 Atomic orbital electron populations 1.21992 0.94022 1.01937 1.02651 1.20488 0.95629 0.95812 0.93387 1.22066 1.01607 0.94546 1.02475 1.21575 0.95447 1.00196 0.97028 1.21581 0.95773 1.01097 0.97046 1.21470 1.00142 0.99010 0.94642 1.21741 0.94990 1.01079 0.98403 1.20966 0.95777 0.98807 0.92089 0.92086 1.21808 1.05163 1.00303 0.87292 1.24683 0.75727 0.84460 0.85705 1.90582 1.38704 1.26050 1.87529 1.86526 1.72455 1.53599 1.16081 1.23095 0.98788 0.93532 0.82813 1.18976 0.96151 0.95934 0.89559 1.21380 1.36756 1.09208 0.91644 0.91826 1.25972 0.94612 0.96427 1.02260 1.70094 1.39451 1.23990 1.23013 0.85314 0.78290 0.78955 0.77694 1.19472 1.20261 1.18790 0.92059 0.91256 0.93027 0.91989 0.91477 0.92267 0.92595 0.90478 0.91378 0.91006 0.93136 0.92026 0.91152 0.93447 0.85844 0.85981 0.92490 0.92531 0.97546 0.97553 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.13 71.98 0.59 -1.48 16 2 C -0.05 -0.81 0.54 -52.18 -0.03 -0.83 16 3 C -0.15 -1.99 7.43 71.98 0.53 -1.45 16 4 C -0.11 -1.46 4.73 30.60 0.14 -1.31 16 5 C -0.12 -1.68 5.65 30.60 0.17 -1.50 16 6 C -0.12 -2.18 5.92 30.59 0.18 -2.00 16 7 C -0.12 -2.81 4.67 30.59 0.14 -2.67 16 8 C -0.06 -1.22 1.14 -10.79 -0.01 -1.23 16 9 H 0.06 1.52 7.95 -2.39 -0.02 1.50 16 10 C -0.11 -2.53 4.57 29.85 0.14 -2.40 16 11 C 0.45 15.57 7.67 71.24 0.55 16.11 16 12 O -0.54 -21.20 13.72 21.98 0.30 -20.90 16 13 O -0.37 -15.19 10.22 -51.34 -0.52 -15.72 16 14 C 0.09 4.23 5.40 71.98 0.39 4.62 16 15 C 0.03 1.70 5.35 29.85 0.16 1.86 16 16 C -0.55 -31.87 9.11 25.60 0.23 -31.63 16 17 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 18 C 0.01 0.36 5.46 84.65 0.46 0.83 16 19 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 20 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 23 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 24 H 0.06 0.85 6.32 -2.39 -0.02 0.83 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.06 0.84 4.81 -2.38 -0.01 0.83 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.79 6.55 -2.39 -0.02 0.77 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.94 6.43 -2.39 -0.02 0.92 16 34 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.42 6.43 -2.38 -0.02 1.40 16 37 H 0.05 1.39 5.96 -2.39 -0.01 1.38 16 38 H 0.12 2.45 6.17 -2.39 -0.01 2.43 16 39 H 0.12 2.43 6.71 -2.38 -0.02 2.42 16 40 H 0.06 2.62 8.13 -2.39 -0.02 2.60 16 41 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 42 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -66.21 334.94 6.69 -59.52 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.96 Total: 9.80 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 3.65 Total: -23.10 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.28 Total: -55.63 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -0.22 Total: -36.61 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -66.21 6.69 -59.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178534801.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.642 kcal (2) G-P(sol) polarization free energy of solvation -66.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds