Wall clock time and date at job start Mon Mar 30 2020 00:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 7 7 C 1.52995 * 109.47577 * 180.02562 * 6 5 4 8 8 C 1.50705 * 109.46702 * 295.00088 * 7 6 5 9 9 O 1.20823 * 120.00198 * 359.97438 * 8 7 6 10 10 O 1.34236 * 120.00008 * 180.02562 * 8 7 6 11 11 C 1.45193 * 116.99834 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46972 * 179.97438 * 11 10 8 13 13 C 1.50701 * 109.47302 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99977 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00106 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00032 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00056 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47134 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46703 * 120.00260 * 17 15 13 20 20 H 1.48499 * 109.47529 * 240.00251 * 17 15 13 21 21 C 1.53002 * 109.46972 * 300.00293 * 6 5 4 22 22 C 1.52997 * 109.47415 * 59.99860 * 21 6 5 23 23 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 24 24 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 28 28 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 29 29 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 30 30 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 31 31 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 32 32 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 33 33 H 1.08996 * 109.47134 * 59.99508 * 6 5 4 34 34 H 1.08998 * 109.47220 * 54.99171 * 7 6 5 35 35 H 1.08991 * 109.47712 * 174.99863 * 7 6 5 36 36 H 1.09007 * 109.46827 * 299.99450 * 11 10 8 37 37 H 1.08999 * 109.47539 * 59.99766 * 11 10 8 38 38 H 1.09003 * 109.47140 * 299.99852 * 12 11 10 39 39 H 1.08999 * 109.47180 * 59.99546 * 12 11 10 40 40 H 0.97005 * 119.99763 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.46986 * 299.99742 * 21 6 5 42 42 H 1.09001 * 109.47601 * 180.02562 * 21 6 5 43 43 H 1.09001 * 109.46922 * 180.02562 * 22 21 6 44 44 H 1.09000 * 109.47140 * 59.99976 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 6 5.6105 -1.4405 -0.0002 8 6 6.1134 -2.2551 -1.1641 9 8 5.3286 -2.7828 -1.9162 10 8 7.4333 -2.3954 -1.3648 11 6 7.8454 -3.1941 -2.5050 12 6 9.3733 -3.2390 -2.5707 13 6 9.8012 -4.0686 -3.7538 14 1 9.0577 -4.5191 -4.3946 15 6 11.1418 -4.2523 -4.0183 16 7 12.0473 -3.7041 -3.2377 17 14 11.6722 -5.2812 -5.4844 18 1 10.4702 -5.7831 -6.1977 19 1 12.4826 -4.4466 -6.4075 20 1 12.4853 -6.4313 -5.0140 21 6 3.5705 -0.7204 1.2490 22 6 2.0405 -0.7209 1.2493 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6768 -0.2074 -2.1392 31 1 3.9330 0.3071 -1.2497 32 1 3.9334 -1.2342 -2.1397 33 1 3.7176 -2.4693 0.0000 34 1 5.9732 -0.4166 -0.0899 35 1 5.9742 -1.8745 0.9311 36 1 7.4561 -4.2068 -2.3990 37 1 7.4557 -2.7490 -3.4205 38 1 9.7623 -2.2263 -2.6768 39 1 9.7634 -3.6839 -1.6553 40 1 12.9905 -3.8331 -3.4240 41 1 3.9335 0.3074 1.2488 42 1 3.9345 -1.2336 2.1390 43 1 1.6772 -0.2067 2.1391 44 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179306890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:47 Heat of formation + Delta-G solvation = -138.426738 kcal Electronic energy + Delta-G solvation = -20700.573354 eV Core-core repulsion = 17615.981473 eV Total energy + Delta-G solvation = -3084.591881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.38833 -39.30370 -36.22335 -34.33588 -33.33463 -30.90645 -30.48215 -29.34212 -27.54494 -25.62901 -24.49358 -22.87679 -21.49289 -20.74324 -19.96572 -18.62711 -17.23545 -16.15284 -16.07995 -15.72673 -15.45483 -14.98122 -14.51074 -14.36075 -14.13442 -13.80503 -13.29451 -13.12379 -12.47880 -12.43244 -12.37340 -12.08633 -12.02162 -11.94950 -11.59991 -11.44667 -11.17900 -11.08515 -10.99066 -10.90901 -10.75075 -10.66929 -10.37213 -10.26451 -10.13852 -9.87485 -9.61173 -9.51719 -9.26445 -8.44547 -6.10390 -4.14584 2.64676 3.24971 3.27459 3.35306 3.41067 4.39011 4.43174 4.48479 4.56110 4.84883 4.90857 4.97539 5.21669 5.25032 5.26236 5.27894 5.41020 5.44988 5.45731 5.51786 5.54972 5.59590 5.63862 5.77683 5.78464 5.84913 5.86685 5.96499 6.04789 6.07984 6.11587 6.13284 6.19272 6.24127 6.43134 6.46275 6.65924 7.08580 7.57566 7.63255 7.87722 8.21672 8.32018 8.91351 9.49875 11.01213 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.049725 B = 0.002897 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.961861 B = 9662.769570 C = 9905.267900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.067 4.067 3 C -0.145 4.145 4 C -0.104 4.104 5 C -0.125 4.125 6 C -0.074 4.074 7 C -0.113 4.113 8 C 0.453 3.547 9 O -0.516 6.516 10 O -0.360 6.360 11 C 0.075 3.925 12 C 0.024 3.976 13 C -0.525 4.525 14 H 0.059 0.941 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.899 3.101 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.116 4.116 22 C -0.106 4.106 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.263 0.737 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.400 9.100 9.839 24.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.067 4.067 3 C -0.202 4.202 4 C -0.142 4.142 5 C -0.162 4.162 6 C -0.092 4.092 7 C -0.151 4.151 8 C 0.297 3.703 9 O -0.406 6.406 10 O -0.276 6.276 11 C 0.003 3.997 12 C -0.013 4.013 13 C -0.563 4.563 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.529 5.529 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.154 4.154 22 C -0.143 4.143 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.401 8.941 9.611 24.259 hybrid contribution 0.406 -0.639 -0.888 1.167 sum -19.995 8.303 8.723 23.341 Atomic orbital electron populations 1.21866 0.94945 1.01597 1.01447 1.20568 0.94909 0.95611 0.95646 1.21974 1.01697 0.95252 1.01246 1.21548 0.95757 1.00255 0.96633 1.21782 0.95327 1.00290 0.98787 1.20980 0.91936 1.00892 0.95407 1.21474 0.96638 1.00915 0.96057 1.23617 0.81592 0.79152 0.85962 1.90587 1.56965 1.46241 1.46810 1.86530 1.24311 1.66673 1.50131 1.23596 0.99639 0.92534 0.83940 1.19171 0.85606 0.98460 0.98095 1.21027 0.92064 1.31945 1.11310 0.92232 1.24991 0.96533 0.95850 0.96840 1.69989 1.00949 1.44046 1.37910 0.86420 0.78709 0.79952 0.82263 1.19589 1.20824 1.20821 1.21634 0.95653 1.00916 0.97165 1.21558 0.95342 1.00414 0.97004 0.92903 0.92810 0.92781 0.91832 0.92957 0.93061 0.92004 0.92239 0.92149 0.90032 0.90314 0.88083 0.88010 0.92434 0.92436 0.95396 0.95404 0.92772 0.91432 0.91855 0.92112 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.48 37.16 0.31 -0.73 16 2 C -0.07 -0.55 0.77 -154.51 -0.12 -0.67 16 3 C -0.14 -1.13 7.78 37.16 0.29 -0.84 16 4 C -0.10 -1.03 4.73 -26.73 -0.13 -1.16 16 5 C -0.12 -1.42 4.67 -26.73 -0.12 -1.54 16 6 C -0.07 -0.80 1.84 -90.62 -0.17 -0.96 16 7 C -0.11 -1.35 5.29 -27.88 -0.15 -1.50 16 8 C 0.45 7.77 7.68 36.01 0.28 8.05 16 9 O -0.52 -9.93 13.72 -18.75 -0.26 -10.19 16 10 O -0.36 -7.28 10.22 -39.27 -0.40 -7.68 16 11 C 0.08 1.71 5.40 37.16 0.20 1.91 16 12 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 13 C -0.53 -14.93 9.11 -34.44 -0.31 -15.25 16 14 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 17 Si 0.90 21.54 29.54 -169.99 -5.02 16.51 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.12 -0.98 4.93 -26.73 -0.13 -1.11 16 22 C -0.11 -0.85 4.73 -26.73 -0.13 -0.97 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.51 4.81 -51.93 -0.25 0.26 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.64 6.43 -51.93 -0.33 0.30 16 32 H 0.08 1.16 5.96 -51.93 -0.31 0.85 16 33 H 0.08 0.96 7.96 -51.93 -0.41 0.55 16 34 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 37 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 342.17 15.07 5.16 5.16 Total: -1.00 -30.62 342.17 -8.15 -38.77 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -7.94 Total: -4.07 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -0.42 Total: -12.67 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.66 Total: -17.87 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.62 -8.15 -38.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179306890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.659 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds