Wall clock time and date at job start Mon Mar 30 2020 00:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 7 7 C 1.52995 * 109.47577 * 180.02562 * 6 5 4 8 8 C 1.50705 * 109.46702 * 295.00088 * 7 6 5 9 9 O 1.20823 * 120.00198 * 359.97438 * 8 7 6 10 10 O 1.34236 * 120.00008 * 180.02562 * 8 7 6 11 11 C 1.45193 * 116.99834 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46972 * 179.97438 * 11 10 8 13 13 C 1.50701 * 109.47302 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99977 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00106 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00032 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00056 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47134 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46703 * 120.00260 * 17 15 13 20 20 H 1.48499 * 109.47529 * 240.00251 * 17 15 13 21 21 C 1.53002 * 109.46972 * 300.00293 * 6 5 4 22 22 C 1.52997 * 109.47415 * 59.99860 * 21 6 5 23 23 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 24 24 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 28 28 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 29 29 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 30 30 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 31 31 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 32 32 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 33 33 H 1.08996 * 109.47134 * 59.99508 * 6 5 4 34 34 H 1.08998 * 109.47220 * 54.99171 * 7 6 5 35 35 H 1.08991 * 109.47712 * 174.99863 * 7 6 5 36 36 H 1.09007 * 109.46827 * 299.99450 * 11 10 8 37 37 H 1.08999 * 109.47539 * 59.99766 * 11 10 8 38 38 H 1.09003 * 109.47140 * 299.99852 * 12 11 10 39 39 H 1.08999 * 109.47180 * 59.99546 * 12 11 10 40 40 H 0.97005 * 119.99763 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.46986 * 299.99742 * 21 6 5 42 42 H 1.09001 * 109.47601 * 180.02562 * 21 6 5 43 43 H 1.09001 * 109.46922 * 180.02562 * 22 21 6 44 44 H 1.09000 * 109.47140 * 59.99976 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 6 5.6105 -1.4405 -0.0002 8 6 6.1134 -2.2551 -1.1641 9 8 5.3286 -2.7828 -1.9162 10 8 7.4333 -2.3954 -1.3648 11 6 7.8454 -3.1941 -2.5050 12 6 9.3733 -3.2390 -2.5707 13 6 9.8012 -4.0686 -3.7538 14 1 9.0577 -4.5191 -4.3946 15 6 11.1418 -4.2523 -4.0183 16 7 12.0473 -3.7041 -3.2377 17 14 11.6722 -5.2812 -5.4844 18 1 10.4702 -5.7831 -6.1977 19 1 12.4826 -4.4466 -6.4075 20 1 12.4853 -6.4313 -5.0140 21 6 3.5705 -0.7204 1.2490 22 6 2.0405 -0.7209 1.2493 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6768 -0.2074 -2.1392 31 1 3.9330 0.3071 -1.2497 32 1 3.9334 -1.2342 -2.1397 33 1 3.7176 -2.4693 0.0000 34 1 5.9732 -0.4166 -0.0899 35 1 5.9742 -1.8745 0.9311 36 1 7.4561 -4.2068 -2.3990 37 1 7.4557 -2.7490 -3.4205 38 1 9.7623 -2.2263 -2.6768 39 1 9.7634 -3.6839 -1.6553 40 1 12.9905 -3.8331 -3.4240 41 1 3.9335 0.3074 1.2488 42 1 3.9345 -1.2336 2.1390 43 1 1.6772 -0.2067 2.1391 44 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179306890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:46 Heat of formation + Delta-G solvation = -153.384480 kcal Electronic energy + Delta-G solvation = -20701.221971 eV Core-core repulsion = 17615.981473 eV Total energy + Delta-G solvation = -3085.240497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.64629 -40.29931 -37.75501 -35.46037 -35.24376 -32.41800 -31.65856 -30.39486 -28.13726 -27.24530 -25.80980 -23.65961 -23.14901 -22.19481 -21.07740 -19.39198 -18.88761 -18.06562 -17.59612 -17.20970 -16.48941 -16.19587 -15.66870 -15.53027 -14.96701 -14.81081 -14.47933 -14.41077 -14.24390 -13.69918 -13.25384 -13.11112 -13.00241 -12.81264 -12.75201 -12.69819 -12.57685 -12.52995 -12.32779 -12.20205 -11.82541 -11.79293 -11.67568 -11.52105 -11.46017 -11.34053 -10.99939 -10.89546 -10.66530 -10.63447 -8.28967 -6.42310 1.25459 1.39782 1.40436 1.54037 1.84152 2.39294 3.05314 3.62073 3.71491 3.77171 3.92387 4.08682 4.19144 4.20745 4.23928 4.35774 4.49616 4.51748 4.57621 4.64345 4.68924 4.71297 4.78408 4.85638 4.89045 5.00199 5.04025 5.12922 5.15037 5.22207 5.25448 5.27140 5.29912 5.33215 5.44705 5.47479 5.52559 5.57397 5.64912 5.72122 5.78087 6.04971 6.70764 6.82114 7.27666 8.83960 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.049725 B = 0.002897 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.961861 B = 9662.769570 C = 9905.267900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 C -0.144 4.144 4 C -0.103 4.103 5 C -0.124 4.124 6 C -0.070 4.070 7 C -0.105 4.105 8 C 0.448 3.552 9 O -0.539 6.539 10 O -0.370 6.370 11 C 0.091 3.909 12 C 0.031 3.969 13 C -0.550 4.550 14 H 0.063 0.937 15 C 0.006 3.994 16 N -0.927 5.927 17 Si 0.974 3.026 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.110 4.110 22 C -0.105 4.105 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.006 0.994 39 H 0.006 0.994 40 H 0.268 0.732 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.281 9.627 10.528 25.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.065 4.065 3 C -0.201 4.201 4 C -0.140 4.140 5 C -0.161 4.161 6 C -0.088 4.088 7 C -0.142 4.142 8 C 0.294 3.706 9 O -0.430 6.430 10 O -0.287 6.287 11 C 0.018 3.982 12 C -0.007 4.007 13 C -0.588 4.588 14 H 0.081 0.919 15 C -0.193 4.193 16 N -0.566 5.566 17 Si 0.798 3.202 18 H -0.187 1.187 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.148 4.148 22 C -0.143 4.143 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.305 9.476 10.313 25.496 hybrid contribution 0.628 -0.769 -1.073 1.462 sum -20.677 8.707 9.239 24.264 Atomic orbital electron populations 1.21850 0.94234 1.01627 1.02008 1.20554 0.95491 0.95768 0.94718 1.21965 1.01537 0.94792 1.01778 1.21525 0.94747 0.99925 0.97838 1.21733 0.96360 1.00354 0.97654 1.20969 0.91048 1.00283 0.96519 1.21686 0.97190 1.01047 0.94298 1.24738 0.80059 0.78956 0.86891 1.90586 1.57055 1.47336 1.48001 1.86529 1.26592 1.66516 1.49073 1.23083 0.97065 0.92999 0.85057 1.18980 0.88225 0.96694 0.96764 1.21404 0.92767 1.32573 1.12077 0.91859 1.25975 0.96460 0.96941 0.99945 1.70103 1.01527 1.45204 1.39769 0.85265 0.78467 0.78205 0.78296 1.18713 1.19942 1.19935 1.21609 0.95895 1.01280 0.95967 1.21569 0.95013 1.00290 0.97396 0.91772 0.92833 0.93052 0.92039 0.93142 0.91874 0.93150 0.92401 0.91179 0.93528 0.92056 0.85902 0.85616 0.92527 0.92548 0.97545 0.97545 0.92278 0.90260 0.90546 0.90501 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.48 71.98 0.61 -1.21 16 2 C -0.07 -0.96 0.77 -52.18 -0.04 -1.00 16 3 C -0.14 -1.90 7.78 71.98 0.56 -1.34 16 4 C -0.10 -1.99 4.73 30.59 0.14 -1.84 16 5 C -0.12 -2.76 4.67 30.59 0.14 -2.61 16 6 C -0.07 -1.41 1.84 -10.80 -0.02 -1.43 16 7 C -0.11 -2.32 5.29 29.85 0.16 -2.16 16 8 C 0.45 15.31 7.68 71.24 0.55 15.86 16 9 O -0.54 -21.11 13.72 21.97 0.30 -20.81 16 10 O -0.37 -15.10 10.22 -51.47 -0.53 -15.62 16 11 C 0.09 4.23 5.40 71.98 0.39 4.61 16 12 C 0.03 1.67 5.35 29.85 0.16 1.83 16 13 C -0.55 -31.75 9.11 25.60 0.23 -31.52 16 14 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 15 C 0.01 0.33 5.46 84.65 0.46 0.79 16 16 N -0.93 -55.94 13.29 21.45 0.28 -55.65 16 17 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 18 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 21 C -0.11 -1.55 4.93 30.59 0.15 -1.40 16 22 C -0.11 -1.43 4.73 30.60 0.14 -1.29 16 23 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.84 4.81 -2.38 -0.01 0.83 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.40 6.43 -2.39 -0.02 1.38 16 32 H 0.05 1.37 5.96 -2.39 -0.01 1.35 16 33 H 0.06 1.47 7.96 -2.39 -0.02 1.45 16 34 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.13 2.24 8.14 -2.39 -0.02 2.23 16 36 H 0.06 2.60 8.13 -2.38 -0.02 2.58 16 37 H 0.06 2.59 8.13 -2.39 -0.02 2.57 16 38 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 41 H 0.08 0.97 6.43 -2.39 -0.02 0.96 16 42 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -66.62 342.17 6.67 -59.95 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.94 Total: 8.78 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 3.64 Total: -22.71 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.28 Total: -55.65 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -0.22 Total: -36.43 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -66.62 6.67 -59.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179306890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.431 kcal (2) G-P(sol) polarization free energy of solvation -66.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds