Wall clock time and date at job start Mon Mar 30 2020 01:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00052 * 2 1 4 4 H 1.48499 * 109.46964 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47391 * 300.00261 * 3 2 1 6 6 H 1.48507 * 109.46890 * 60.00110 * 3 2 1 7 7 C 1.37876 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99799 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47052 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.46997 * 179.97438 * 10 9 7 12 12 C 1.46898 * 110.99929 * 175.26793 * 11 10 9 13 13 H 1.09005 * 109.46781 * 38.23929 * 12 11 10 14 14 C 1.53002 * 109.47232 * 278.23975 * 12 11 10 15 15 C 1.50699 * 109.47013 * 173.58965 * 14 12 11 16 16 N 1.34773 * 119.99987 * 174.09137 * 15 14 12 17 17 O 1.21281 * 120.00243 * 354.09478 * 15 14 12 18 18 C 1.52996 * 109.47035 * 158.24058 * 12 11 10 19 19 C 1.53002 * 109.47396 * 60.00191 * 18 12 11 20 20 C 1.52998 * 109.47028 * 179.97438 * 19 18 12 21 21 C 1.52997 * 109.47201 * 60.00310 * 20 19 18 22 22 C 1.53006 * 109.47147 * 299.99322 * 21 20 19 23 23 C 1.53002 * 109.47042 * 300.00033 * 18 12 11 24 24 H 0.97001 * 119.99544 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47106 * 59.99316 * 9 7 2 26 26 H 1.08998 * 109.46717 * 299.99575 * 9 7 2 27 27 H 1.09004 * 109.47065 * 59.99346 * 10 9 7 28 28 H 1.09004 * 109.46865 * 299.99810 * 10 9 7 29 29 H 1.00895 * 110.99587 * 51.31574 * 11 10 9 30 30 H 1.09000 * 109.46987 * 53.59668 * 14 12 11 31 31 H 1.08993 * 109.47055 * 293.58898 * 14 12 11 32 32 H 0.97002 * 119.99994 * 359.97438 * 16 15 14 33 33 H 0.97003 * 120.00119 * 180.02562 * 16 15 14 34 34 H 1.09006 * 109.46967 * 180.02562 * 18 12 11 35 35 H 1.09002 * 109.46595 * 300.00286 * 19 18 12 36 36 H 1.08994 * 109.46598 * 59.99679 * 19 18 12 37 37 H 1.09000 * 109.47166 * 299.99701 * 20 19 18 38 38 H 1.08999 * 109.46591 * 179.97438 * 20 19 18 39 39 H 1.09003 * 109.47247 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.47558 * 59.99631 * 21 20 19 41 41 H 1.09000 * 109.47144 * 300.00562 * 22 21 20 42 42 H 1.08991 * 109.47205 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.47469 * 299.99999 * 23 18 12 44 44 H 1.09000 * 109.47270 * 60.00148 * 23 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5107 -4.9343 0.0012 12 6 2.4310 -6.0736 -0.1120 13 1 3.3308 -5.8730 0.4698 14 6 2.8085 -6.2805 -1.5802 15 6 3.8710 -7.3445 -1.6805 16 7 4.2754 -7.7811 -2.8897 17 8 4.3622 -7.8079 -0.6731 18 6 1.7492 -7.3349 0.4219 19 6 0.4863 -7.6165 -0.3947 20 6 -0.1951 -8.8782 0.1388 21 6 -0.5727 -8.6719 1.6071 22 6 0.6903 -8.3904 2.4237 23 6 1.3717 -7.1280 1.8901 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 0.8198 -4.9532 -0.7339 30 1 3.1899 -5.3463 -1.9924 31 1 1.9278 -6.5925 -2.1413 32 1 3.8823 -7.4107 -3.6955 33 1 4.9591 -8.4662 -2.9543 34 1 2.4323 -8.1803 0.3384 35 1 -0.1966 -6.7711 -0.3107 36 1 0.7553 -7.7639 -1.4406 37 1 0.4880 -9.7234 0.0545 38 1 -1.0951 -9.0785 -0.4426 39 1 -1.0577 -9.5710 1.9873 40 1 -1.2558 -7.8267 1.6914 41 1 1.3734 -9.2356 2.3394 42 1 0.4214 -8.2439 3.4697 43 1 2.2714 -6.9275 2.4718 44 1 0.6888 -6.2827 1.9740 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182028985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:04 Heat of formation + Delta-G solvation = -81.371992 kcal Electronic energy + Delta-G solvation = -21352.866017 eV Core-core repulsion = 18303.040966 eV Total energy + Delta-G solvation = -3049.825050 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.06207 -38.34805 -35.96691 -33.73001 -33.34301 -31.58369 -30.56577 -29.20223 -28.23433 -24.54425 -23.28079 -22.38138 -21.16630 -20.56825 -19.94975 -19.04008 -17.35885 -16.78620 -16.21012 -15.84668 -14.79528 -14.78319 -14.46523 -14.36202 -14.02350 -13.90369 -13.58148 -13.12285 -12.81789 -12.50968 -12.42705 -12.03687 -11.88883 -11.44919 -11.15038 -10.96017 -10.92643 -10.86219 -10.70280 -10.52461 -10.22779 -10.15109 -9.87848 -9.84565 -9.71735 -9.67521 -9.29481 -9.11722 -8.35786 -7.77168 -6.00054 -4.02268 2.62841 3.30909 3.38609 3.42601 3.48689 4.44052 4.67124 4.79318 4.89798 4.93434 5.11799 5.16545 5.24314 5.36244 5.42631 5.45568 5.61498 5.72419 5.77139 5.78303 5.81474 5.87681 6.12214 6.13716 6.19703 6.36296 6.37168 6.43730 6.45147 6.48936 6.54022 6.66573 6.68271 6.92845 6.99313 7.21906 7.51554 7.73207 7.85395 7.98239 8.09120 8.21833 8.44267 9.05363 9.61735 11.11350 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017626 B = 0.004583 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.222958 B = 6107.976429 C = 7153.471222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.064 3.936 11 N -0.677 5.677 12 C 0.107 3.893 13 H 0.083 0.917 14 C -0.181 4.181 15 C 0.522 3.478 16 N -0.862 5.862 17 O -0.539 6.539 18 C -0.073 4.073 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.104 4.104 24 H 0.260 0.740 25 H 0.012 0.988 26 H 0.025 0.975 27 H 0.059 0.941 28 H 0.014 0.986 29 H 0.334 0.666 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.400 0.600 33 H 0.397 0.603 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.323 -18.318 -4.624 19.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.064 4.064 11 N -0.306 5.306 12 C -0.004 4.004 13 H 0.102 0.898 14 C -0.223 4.223 15 C 0.307 3.693 16 N -0.426 5.426 17 O -0.415 6.415 18 C -0.092 4.092 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.142 4.142 24 H 0.069 0.931 25 H 0.031 0.969 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.032 0.968 29 H 0.153 0.847 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.228 0.772 33 H 0.227 0.773 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.324 -18.384 -3.145 18.796 hybrid contribution 0.850 0.963 -1.606 2.056 sum 3.174 -17.421 -4.751 18.335 Atomic orbital electron populations 1.69984 1.06012 1.26441 1.50836 1.24994 0.94820 0.99180 0.95331 0.86556 0.80113 0.83871 0.77572 1.19782 1.21076 1.20975 1.21216 0.93012 0.91031 1.50621 0.92752 1.19084 0.94016 0.90566 0.97635 1.22205 0.97061 0.88535 0.98611 1.60776 1.15555 1.02088 1.52186 1.21399 0.96024 0.91915 0.91112 0.89834 1.22668 0.98259 0.98453 1.02939 1.20745 0.82832 0.82696 0.82997 1.43986 1.45011 1.44973 1.08616 1.90723 1.57005 1.58275 1.35525 1.21170 0.95917 0.96698 0.95401 1.21660 0.97719 0.98041 0.98104 1.21492 0.99691 0.98005 0.96161 1.21514 0.97819 1.01003 0.95186 1.21559 0.96820 0.98538 0.98758 1.21434 1.00534 0.97554 0.94671 0.93079 0.96932 0.95612 0.92283 0.96788 0.84737 0.88585 0.88659 0.77189 0.77288 0.90664 0.90893 0.93094 0.92708 0.92639 0.92902 0.91774 0.92803 0.92542 0.92748 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.62 5.18 -27.88 -0.14 0.48 16 10 C 0.06 1.30 5.44 -3.82 -0.02 1.28 16 11 N -0.68 -11.31 5.10 -106.72 -0.54 -11.86 16 12 C 0.11 1.56 1.45 -67.72 -0.10 1.46 16 13 H 0.08 1.42 7.58 -51.93 -0.39 1.02 16 14 C -0.18 -2.18 4.99 -27.88 -0.14 -2.32 16 15 C 0.52 6.41 7.72 -10.99 -0.08 6.32 16 16 N -0.86 -6.97 8.87 31.22 0.28 -6.69 16 17 O -0.54 -8.68 15.12 5.56 0.08 -8.60 16 18 C -0.07 -0.98 1.83 -90.62 -0.17 -1.15 16 19 C -0.12 -1.40 4.57 -26.73 -0.12 -1.52 16 20 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 21 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16 22 C -0.12 -1.44 5.93 -26.70 -0.16 -1.60 16 23 C -0.10 -1.47 5.05 -26.70 -0.13 -1.60 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.01 0.28 7.04 -51.93 -0.37 -0.09 16 29 H 0.33 5.35 7.54 -39.29 -0.30 5.06 16 30 H 0.10 1.18 7.06 -51.93 -0.37 0.82 16 31 H 0.10 0.96 6.11 -51.93 -0.32 0.65 16 32 H 0.40 2.14 8.83 -40.82 -0.36 1.78 16 33 H 0.40 2.79 8.93 -40.82 -0.36 2.42 16 34 H 0.08 1.11 6.29 -51.93 -0.33 0.78 16 35 H 0.07 0.94 7.12 -51.93 -0.37 0.57 16 36 H 0.05 0.55 6.29 -51.93 -0.33 0.22 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.26 7.60 -51.93 -0.39 0.86 16 LS Contribution 339.67 15.07 5.12 5.12 Total: -1.00 -31.72 339.67 -8.80 -40.52 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -7.65 Total: 5.82 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -1.80 Total: -14.90 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.47 Total: -44.53 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.08 Total: -8.60 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.72 -8.80 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182028985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.852 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds