Wall clock time and date at job start Mon Mar 30 2020 01:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00052 * 2 1 4 4 H 1.48499 * 109.46964 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47391 * 300.00261 * 3 2 1 6 6 H 1.48507 * 109.46890 * 60.00110 * 3 2 1 7 7 C 1.37876 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99799 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47052 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.46997 * 179.97438 * 10 9 7 12 12 C 1.46898 * 110.99929 * 175.26793 * 11 10 9 13 13 H 1.09005 * 109.46781 * 38.23929 * 12 11 10 14 14 C 1.53002 * 109.47232 * 278.23975 * 12 11 10 15 15 C 1.50699 * 109.47013 * 173.58965 * 14 12 11 16 16 N 1.34773 * 119.99987 * 174.09137 * 15 14 12 17 17 O 1.21281 * 120.00243 * 354.09478 * 15 14 12 18 18 C 1.52996 * 109.47035 * 158.24058 * 12 11 10 19 19 C 1.53002 * 109.47396 * 60.00191 * 18 12 11 20 20 C 1.52998 * 109.47028 * 179.97438 * 19 18 12 21 21 C 1.52997 * 109.47201 * 60.00310 * 20 19 18 22 22 C 1.53006 * 109.47147 * 299.99322 * 21 20 19 23 23 C 1.53002 * 109.47042 * 300.00033 * 18 12 11 24 24 H 0.97001 * 119.99544 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47106 * 59.99316 * 9 7 2 26 26 H 1.08998 * 109.46717 * 299.99575 * 9 7 2 27 27 H 1.09004 * 109.47065 * 59.99346 * 10 9 7 28 28 H 1.09004 * 109.46865 * 299.99810 * 10 9 7 29 29 H 1.00895 * 110.99587 * 51.31574 * 11 10 9 30 30 H 1.09000 * 109.46987 * 53.59668 * 14 12 11 31 31 H 1.08993 * 109.47055 * 293.58898 * 14 12 11 32 32 H 0.97002 * 119.99994 * 359.97438 * 16 15 14 33 33 H 0.97003 * 120.00119 * 180.02562 * 16 15 14 34 34 H 1.09006 * 109.46967 * 180.02562 * 18 12 11 35 35 H 1.09002 * 109.46595 * 300.00286 * 19 18 12 36 36 H 1.08994 * 109.46598 * 59.99679 * 19 18 12 37 37 H 1.09000 * 109.47166 * 299.99701 * 20 19 18 38 38 H 1.08999 * 109.46591 * 179.97438 * 20 19 18 39 39 H 1.09003 * 109.47247 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.47558 * 59.99631 * 21 20 19 41 41 H 1.09000 * 109.47144 * 300.00562 * 22 21 20 42 42 H 1.08991 * 109.47205 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.47469 * 299.99999 * 23 18 12 44 44 H 1.09000 * 109.47270 * 60.00148 * 23 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5107 -4.9343 0.0012 12 6 2.4310 -6.0736 -0.1120 13 1 3.3308 -5.8730 0.4698 14 6 2.8085 -6.2805 -1.5802 15 6 3.8710 -7.3445 -1.6805 16 7 4.2754 -7.7811 -2.8897 17 8 4.3622 -7.8079 -0.6731 18 6 1.7492 -7.3349 0.4219 19 6 0.4863 -7.6165 -0.3947 20 6 -0.1951 -8.8782 0.1388 21 6 -0.5727 -8.6719 1.6071 22 6 0.6903 -8.3904 2.4237 23 6 1.3717 -7.1280 1.8901 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8718 -3.6044 -0.8895 29 1 0.8198 -4.9532 -0.7339 30 1 3.1899 -5.3463 -1.9924 31 1 1.9278 -6.5925 -2.1413 32 1 3.8823 -7.4107 -3.6955 33 1 4.9591 -8.4662 -2.9543 34 1 2.4323 -8.1803 0.3384 35 1 -0.1966 -6.7711 -0.3107 36 1 0.7553 -7.7639 -1.4406 37 1 0.4880 -9.7234 0.0545 38 1 -1.0951 -9.0785 -0.4426 39 1 -1.0577 -9.5710 1.9873 40 1 -1.2558 -7.8267 1.6914 41 1 1.3734 -9.2356 2.3394 42 1 0.4214 -8.2439 3.4697 43 1 2.2714 -6.9275 2.4718 44 1 0.6888 -6.2827 1.9740 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182028985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:03 Heat of formation + Delta-G solvation = -103.619305 kcal Electronic energy + Delta-G solvation = -21353.830733 eV Core-core repulsion = 18303.040966 eV Total energy + Delta-G solvation = -3050.789766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12063 -39.38380 -37.32522 -35.25829 -34.61001 -33.20543 -31.56675 -30.40685 -29.78824 -26.28216 -24.61882 -23.43715 -22.42442 -22.09853 -20.97045 -20.15199 -18.47504 -18.21015 -17.65308 -16.94285 -16.48602 -16.05319 -15.87736 -15.58764 -15.15053 -14.92787 -14.63460 -14.54169 -14.38493 -13.80433 -13.72338 -13.51267 -13.09813 -12.91189 -12.84978 -12.47417 -12.43120 -12.03257 -11.96340 -11.87154 -11.80105 -11.41671 -11.27408 -11.20192 -10.96207 -10.75485 -10.70590 -10.57269 -10.54665 -9.17766 -8.18883 -6.29423 1.40347 1.41610 1.54197 1.66813 2.41355 2.64030 3.14940 3.44022 3.68801 3.90084 3.96803 4.06289 4.22627 4.25556 4.40858 4.46330 4.52273 4.58340 4.68252 4.76020 4.77354 4.80162 4.86118 4.92444 5.01235 5.10973 5.17681 5.24934 5.39107 5.43717 5.45430 5.46899 5.50357 5.59599 5.72537 5.77199 5.84533 5.94446 6.18794 6.32596 6.47526 6.65046 6.88272 7.38628 7.39783 8.93193 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017626 B = 0.004583 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.222958 B = 6107.976429 C = 7153.471222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.057 0.943 9 C 0.033 3.967 10 C 0.084 3.916 11 N -0.676 5.676 12 C 0.109 3.891 13 H 0.056 0.944 14 C -0.175 4.175 15 C 0.522 3.478 16 N -0.839 5.839 17 O -0.583 6.583 18 C -0.064 4.064 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.105 4.105 24 H 0.263 0.737 25 H -0.003 1.003 26 H -0.007 1.007 27 H 0.046 0.954 28 H 0.023 0.977 29 H 0.341 0.659 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.417 0.583 33 H 0.406 0.594 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.037 0.963 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.702 -19.092 -6.110 20.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.045 4.045 11 N -0.306 5.306 12 C -0.001 4.001 13 H 0.074 0.926 14 C -0.217 4.217 15 C 0.307 3.693 16 N -0.403 5.403 17 O -0.463 6.463 18 C -0.083 4.083 19 C -0.152 4.152 20 C -0.151 4.151 21 C -0.155 4.155 22 C -0.154 4.154 23 C -0.142 4.142 24 H 0.072 0.928 25 H 0.015 0.985 26 H 0.011 0.989 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.160 0.840 30 H 0.114 0.886 31 H 0.139 0.861 32 H 0.248 0.752 33 H 0.238 0.762 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.710 -19.180 -4.687 19.930 hybrid contribution 0.728 1.170 -1.149 1.794 sum 3.437 -18.010 -5.836 19.242 Atomic orbital electron populations 1.70106 1.07687 1.27639 1.51592 1.25905 0.95712 1.03119 0.94722 0.85435 0.79022 0.78994 0.77796 1.18806 1.20157 1.20571 1.21634 0.93414 0.92391 1.50635 0.92484 1.18915 0.94219 0.92083 0.95205 1.21785 0.95697 0.88566 0.98407 1.60632 1.15873 1.01211 1.52930 1.21306 0.94569 0.91368 0.92903 0.92577 1.22546 0.99451 0.98745 1.00955 1.20695 0.82620 0.82491 0.83496 1.43753 1.44349 1.44248 1.07969 1.90717 1.58512 1.59836 1.37229 1.21060 0.96532 0.95555 0.95147 1.21637 0.96478 0.98328 0.98771 1.21489 1.00322 0.97371 0.95936 1.21517 0.97041 1.01437 0.95466 1.21531 0.97301 0.97387 0.99148 1.21404 0.99498 0.98012 0.95333 0.92789 0.98455 0.98865 0.93558 0.95869 0.83951 0.88551 0.86121 0.75233 0.76241 0.91323 0.91949 0.91389 0.92266 0.91070 0.91202 0.92612 0.92402 0.92193 0.94413 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.54 -30.84 9.11 25.60 0.23 -30.61 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.03 1.74 5.18 29.85 0.15 1.90 16 10 C 0.08 3.50 5.44 86.30 0.47 3.97 16 11 N -0.68 -22.94 5.10 -491.56 -2.51 -25.45 16 12 C 0.11 3.20 1.45 44.92 0.06 3.27 16 13 H 0.06 1.97 7.58 -2.38 -0.02 1.95 16 14 C -0.18 -3.95 4.99 29.85 0.15 -3.81 16 15 C 0.52 12.01 7.72 87.66 0.68 12.69 16 16 N -0.84 -11.41 8.87 -173.54 -1.54 -12.95 16 17 O -0.58 -18.52 15.12 -3.03 -0.05 -18.57 16 18 C -0.06 -1.71 1.83 -10.79 -0.02 -1.73 16 19 C -0.11 -2.54 4.57 30.59 0.14 -2.40 16 20 C -0.11 -2.23 5.92 30.59 0.18 -2.05 16 21 C -0.12 -2.44 5.92 30.60 0.18 -2.26 16 22 C -0.12 -2.75 5.93 30.62 0.18 -2.57 16 23 C -0.10 -3.02 5.05 30.61 0.15 -2.86 16 24 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 25 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 26 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 27 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.02 0.92 7.04 -2.39 -0.02 0.90 16 29 H 0.34 10.86 7.54 -89.70 -0.68 10.18 16 30 H 0.10 2.21 7.06 -2.39 -0.02 2.19 16 31 H 0.12 2.10 6.11 -2.39 -0.01 2.08 16 32 H 0.42 3.10 8.83 -92.71 -0.82 2.28 16 33 H 0.41 4.69 8.93 -92.71 -0.83 3.86 16 34 H 0.07 1.99 6.29 -2.38 -0.02 1.98 16 35 H 0.06 1.53 7.12 -2.39 -0.02 1.52 16 36 H 0.07 1.27 6.29 -2.39 -0.02 1.25 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 43 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.06 1.96 7.60 -2.39 -0.02 1.95 16 Total: -1.00 -69.50 339.67 -0.07 -69.58 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -1.32 Total: 22.98 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: 3.03 Total: -25.80 kcal Atomic # 7 Polarization: -90.70 SS G_CDS: -3.76 Total: -94.46 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.05 Total: -18.57 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -69.50 -0.07 -69.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182028985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.041 kcal (2) G-P(sol) polarization free energy of solvation -69.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds