Wall clock time and date at job start Mon Mar 30 2020 01:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 120.00073 * 2 1 4 4 H 1.48497 * 109.47182 * 269.99980 * 3 2 1 5 5 H 1.48500 * 109.47071 * 29.99990 * 3 2 1 6 6 H 1.48499 * 109.46738 * 149.99650 * 3 2 1 7 7 C 1.37874 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00177 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99901 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47099 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47026 * 180.02562 * 10 9 7 12 12 C 1.46908 * 110.99859 * 174.75639 * 11 10 9 13 13 H 1.08997 * 109.46959 * 329.49008 * 12 11 10 14 14 C 1.53002 * 109.46949 * 89.49096 * 12 11 10 15 15 C 1.50694 * 109.47324 * 58.22319 * 14 12 11 16 16 N 1.34776 * 119.99915 * 180.34645 * 15 14 12 17 17 O 1.21282 * 120.00300 * 0.35630 * 15 14 12 18 18 C 1.53002 * 109.46706 * 209.48824 * 12 11 10 19 19 C 1.53002 * 109.46752 * 175.28809 * 18 12 11 20 20 C 1.52995 * 109.47293 * 179.97438 * 19 18 12 21 21 C 1.53002 * 109.46761 * 60.00046 * 20 19 18 22 22 C 1.53002 * 109.47180 * 300.00023 * 21 20 19 23 23 C 1.52989 * 109.47425 * 55.28999 * 18 12 11 24 24 H 0.97001 * 119.99523 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47270 * 60.00496 * 9 7 2 26 26 H 1.08992 * 109.47471 * 300.00221 * 9 7 2 27 27 H 1.08995 * 109.47757 * 300.00370 * 10 9 7 28 28 H 1.08997 * 109.47005 * 60.00770 * 10 9 7 29 29 H 1.00899 * 111.00291 * 298.71157 * 11 10 9 30 30 H 1.09000 * 109.47157 * 178.23030 * 14 12 11 31 31 H 1.09001 * 109.46828 * 298.22528 * 14 12 11 32 32 H 0.96998 * 120.00249 * 0.02562 * 16 15 14 33 33 H 0.97000 * 120.00200 * 180.02562 * 16 15 14 34 34 H 1.09001 * 109.47329 * 295.28255 * 18 12 11 35 35 H 1.08997 * 109.47326 * 300.00232 * 19 18 12 36 36 H 1.09005 * 109.46949 * 59.99482 * 19 18 12 37 37 H 1.08997 * 109.47332 * 300.00483 * 20 19 18 38 38 H 1.08999 * 109.47476 * 180.02562 * 20 19 18 39 39 H 1.09002 * 109.46986 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.47248 * 60.00321 * 21 20 19 41 41 H 1.09001 * 109.46751 * 300.00247 * 22 21 20 42 42 H 1.08996 * 109.47165 * 180.02562 * 22 21 20 43 43 H 1.08999 * 109.47082 * 299.99932 * 23 18 12 44 44 H 1.09001 * 109.47475 * 59.99345 * 23 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 7 1.5107 -4.9342 -0.0024 12 6 2.4302 -6.0730 -0.1290 13 1 3.3029 -5.7725 -0.7087 14 6 2.8741 -6.5272 1.2630 15 6 1.6638 -6.9012 2.0791 16 7 1.8127 -7.3269 3.3492 17 8 0.5556 -6.8193 1.5930 18 6 1.7186 -7.2264 -0.8391 19 6 2.7092 -8.3682 -1.0759 20 6 1.9977 -9.5219 -1.7853 21 6 1.4504 -9.0347 -3.1285 22 6 0.4598 -7.8929 -2.8917 23 6 1.1719 -6.7389 -2.1822 24 1 -0.4849 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8713 -3.6040 -0.8922 28 1 2.8725 -3.6048 0.8878 29 1 0.9383 -5.0218 0.8239 30 1 3.5314 -7.3917 1.1706 31 1 3.4085 -5.7156 1.7567 32 1 2.6989 -7.3921 3.7380 33 1 1.0337 -7.5680 3.8744 34 1 0.8956 -7.5823 -0.2193 35 1 3.5323 -8.0124 -1.6956 36 1 3.0989 -8.7155 -0.1189 37 1 1.1748 -9.8775 -1.1653 38 1 2.7033 -10.3355 -1.9536 39 1 0.9431 -9.8565 -3.6337 40 1 2.2733 -8.6790 -3.7486 41 1 -0.3630 -8.2487 -2.2715 42 1 0.0696 -7.5461 -3.8485 43 1 0.4662 -5.9255 -2.0135 44 1 1.9949 -6.3831 -2.8020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182029002.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:07 Heat of formation + Delta-G solvation = -74.944481 kcal Electronic energy + Delta-G solvation = -21492.979871 eV Core-core repulsion = 18443.433539 eV Total energy + Delta-G solvation = -3049.546333 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.18803 -38.16391 -35.78194 -33.69905 -33.28606 -31.61979 -30.51397 -29.29127 -28.04501 -24.47530 -23.09268 -22.26409 -21.24507 -20.49867 -19.77352 -19.42913 -17.18249 -16.72177 -16.21047 -15.69357 -15.01575 -14.58013 -14.44636 -14.31947 -13.93828 -13.75709 -13.56776 -13.05313 -12.87536 -12.33339 -12.24279 -11.89187 -11.77104 -11.53069 -11.30837 -11.05151 -10.91858 -10.86823 -10.81168 -10.52985 -10.29263 -9.99653 -9.82549 -9.75252 -9.64110 -9.40611 -9.21088 -9.04140 -8.28573 -7.54042 -5.92988 -3.95528 2.66586 3.35307 3.41162 3.43920 3.53593 4.48199 4.71011 4.73119 4.90304 4.94140 5.09394 5.19098 5.29608 5.42352 5.42498 5.54339 5.61329 5.73731 5.74407 5.80482 5.82305 5.88087 5.95949 6.12229 6.20310 6.31418 6.38281 6.43531 6.47723 6.50513 6.61105 6.71446 6.94060 6.97270 7.10636 7.26754 7.67776 7.88150 7.94703 8.14508 8.21663 8.36401 8.53406 9.12515 9.67688 11.18383 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019710 B = 0.004553 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.279453 B = 6147.772112 C = 6983.298152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.027 3.973 10 C 0.065 3.935 11 N -0.680 5.680 12 C 0.108 3.892 13 H 0.076 0.924 14 C -0.180 4.180 15 C 0.515 3.485 16 N -0.861 5.861 17 O -0.521 6.521 18 C -0.083 4.083 19 C -0.117 4.117 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.101 4.101 24 H 0.260 0.740 25 H 0.025 0.975 26 H 0.011 0.989 27 H 0.055 0.945 28 H 0.007 0.993 29 H 0.348 0.652 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.398 0.602 33 H 0.399 0.601 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.083 0.917 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.699 -20.138 1.990 21.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.063 4.063 11 N -0.314 5.314 12 C -0.003 4.003 13 H 0.094 0.906 14 C -0.222 4.222 15 C 0.301 3.699 16 N -0.425 5.425 17 O -0.396 6.396 18 C -0.102 4.102 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.138 4.138 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.030 0.970 27 H 0.073 0.927 28 H 0.026 0.974 29 H 0.171 0.829 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.226 0.774 33 H 0.229 0.771 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.750 -19.853 0.839 20.686 hybrid contribution 1.141 0.813 1.471 2.032 sum 6.891 -19.039 2.310 20.380 Atomic orbital electron populations 1.69988 1.06007 1.26443 1.50739 1.25003 0.94805 0.99109 0.95444 0.86618 0.79759 0.83654 0.78076 1.20661 1.21282 1.20009 1.21199 0.92882 0.91149 1.50686 0.92898 1.19026 0.94032 0.90283 0.97695 1.22194 0.96818 0.89357 0.97961 1.60565 1.22655 1.00641 1.47548 1.21403 0.95219 0.92351 0.91342 0.90587 1.22556 0.96800 1.03402 0.99403 1.20778 0.91441 0.75782 0.81944 1.43979 1.12494 1.71017 1.15032 1.90719 1.26919 1.51860 1.70100 1.21340 0.98307 0.93188 0.97397 1.21671 0.98413 0.95975 0.99413 1.21480 0.99661 0.97389 0.96778 1.21534 0.99049 0.98080 0.96890 1.21575 0.98027 0.96030 1.00173 1.21379 1.00255 0.97531 0.94647 0.93066 0.95643 0.97015 0.92652 0.97431 0.82918 0.88702 0.89032 0.77397 0.77113 0.89007 0.92350 0.92936 0.92339 0.92788 0.92839 0.92323 0.92357 0.92558 0.89876 0.93160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.62 13.29 55.43 0.74 -26.89 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.74 5.28 -27.88 -0.15 0.59 16 10 C 0.07 1.41 5.49 -3.82 -0.02 1.39 16 11 N -0.68 -12.86 5.15 -106.72 -0.55 -13.41 16 12 C 0.11 1.59 1.84 -67.71 -0.12 1.47 16 13 H 0.08 1.11 7.65 -51.93 -0.40 0.71 16 14 C -0.18 -2.09 5.40 -27.88 -0.15 -2.24 16 15 C 0.52 6.56 7.28 -10.99 -0.08 6.48 16 16 N -0.86 -7.39 8.87 31.22 0.28 -7.11 16 17 O -0.52 -8.75 12.73 5.56 0.07 -8.68 16 18 C -0.08 -1.15 1.69 -90.62 -0.15 -1.31 16 19 C -0.12 -1.29 4.95 -26.73 -0.13 -1.43 16 20 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 21 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 22 C -0.12 -1.53 5.92 -26.71 -0.16 -1.69 16 23 C -0.10 -1.49 5.00 -26.72 -0.13 -1.62 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 1.19 7.92 -51.93 -0.41 0.77 16 28 H 0.01 0.16 7.93 -51.93 -0.41 -0.25 16 29 H 0.35 7.01 5.84 -39.29 -0.23 6.78 16 30 H 0.09 0.84 6.47 -51.93 -0.34 0.51 16 31 H 0.09 1.05 7.93 -51.93 -0.41 0.64 16 32 H 0.40 2.19 8.83 -40.82 -0.36 1.83 16 33 H 0.40 3.12 8.93 -40.82 -0.36 2.76 16 34 H 0.09 1.46 5.57 -51.93 -0.29 1.17 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.52 6.52 -51.93 -0.34 0.18 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.08 1.48 7.48 -51.93 -0.39 1.09 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 338.72 15.07 5.10 5.10 Total: -1.00 -32.89 338.72 -8.92 -41.81 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.71 Total: 7.17 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -1.83 Total: -15.00 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.46 Total: -47.41 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.07 Total: -8.68 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.89 -8.92 -41.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182029002.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.135 kcal (2) G-P(sol) polarization free energy of solvation -32.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds