Wall clock time and date at job start Mon Mar 30 2020 01:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 120.00073 * 2 1 4 4 H 1.48497 * 109.47182 * 269.99980 * 3 2 1 5 5 H 1.48500 * 109.47071 * 29.99990 * 3 2 1 6 6 H 1.48499 * 109.46738 * 149.99650 * 3 2 1 7 7 C 1.37874 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00177 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99901 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47099 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47026 * 180.02562 * 10 9 7 12 12 C 1.46908 * 110.99859 * 174.75639 * 11 10 9 13 13 H 1.08997 * 109.46959 * 329.49008 * 12 11 10 14 14 C 1.53002 * 109.46949 * 89.49096 * 12 11 10 15 15 C 1.50694 * 109.47324 * 58.22319 * 14 12 11 16 16 N 1.34776 * 119.99915 * 180.34645 * 15 14 12 17 17 O 1.21282 * 120.00300 * 0.35630 * 15 14 12 18 18 C 1.53002 * 109.46706 * 209.48824 * 12 11 10 19 19 C 1.53002 * 109.46752 * 175.28809 * 18 12 11 20 20 C 1.52995 * 109.47293 * 179.97438 * 19 18 12 21 21 C 1.53002 * 109.46761 * 60.00046 * 20 19 18 22 22 C 1.53002 * 109.47180 * 300.00023 * 21 20 19 23 23 C 1.52989 * 109.47425 * 55.28999 * 18 12 11 24 24 H 0.97001 * 119.99523 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47270 * 60.00496 * 9 7 2 26 26 H 1.08992 * 109.47471 * 300.00221 * 9 7 2 27 27 H 1.08995 * 109.47757 * 300.00370 * 10 9 7 28 28 H 1.08997 * 109.47005 * 60.00770 * 10 9 7 29 29 H 1.00899 * 111.00291 * 298.71157 * 11 10 9 30 30 H 1.09000 * 109.47157 * 178.23030 * 14 12 11 31 31 H 1.09001 * 109.46828 * 298.22528 * 14 12 11 32 32 H 0.96998 * 120.00249 * 0.02562 * 16 15 14 33 33 H 0.97000 * 120.00200 * 180.02562 * 16 15 14 34 34 H 1.09001 * 109.47329 * 295.28255 * 18 12 11 35 35 H 1.08997 * 109.47326 * 300.00232 * 19 18 12 36 36 H 1.09005 * 109.46949 * 59.99482 * 19 18 12 37 37 H 1.08997 * 109.47332 * 300.00483 * 20 19 18 38 38 H 1.08999 * 109.47476 * 180.02562 * 20 19 18 39 39 H 1.09002 * 109.46986 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.47248 * 60.00321 * 21 20 19 41 41 H 1.09001 * 109.46751 * 300.00247 * 22 21 20 42 42 H 1.08996 * 109.47165 * 180.02562 * 22 21 20 43 43 H 1.08999 * 109.47082 * 299.99932 * 23 18 12 44 44 H 1.09001 * 109.47475 * 59.99345 * 23 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 7 1.5107 -4.9342 -0.0024 12 6 2.4302 -6.0730 -0.1290 13 1 3.3029 -5.7725 -0.7087 14 6 2.8741 -6.5272 1.2630 15 6 1.6638 -6.9012 2.0791 16 7 1.8127 -7.3269 3.3492 17 8 0.5556 -6.8193 1.5930 18 6 1.7186 -7.2264 -0.8391 19 6 2.7092 -8.3682 -1.0759 20 6 1.9977 -9.5219 -1.7853 21 6 1.4504 -9.0347 -3.1285 22 6 0.4598 -7.8929 -2.8917 23 6 1.1719 -6.7389 -2.1822 24 1 -0.4849 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8713 -3.6040 -0.8922 28 1 2.8725 -3.6048 0.8878 29 1 0.9383 -5.0218 0.8239 30 1 3.5314 -7.3917 1.1706 31 1 3.4085 -5.7156 1.7567 32 1 2.6989 -7.3921 3.7380 33 1 1.0337 -7.5680 3.8744 34 1 0.8956 -7.5823 -0.2193 35 1 3.5323 -8.0124 -1.6956 36 1 3.0989 -8.7155 -0.1189 37 1 1.1748 -9.8775 -1.1653 38 1 2.7033 -10.3355 -1.9536 39 1 0.9431 -9.8565 -3.6337 40 1 2.2733 -8.6790 -3.7486 41 1 -0.3630 -8.2487 -2.2715 42 1 0.0696 -7.5461 -3.8485 43 1 0.4662 -5.9255 -2.0135 44 1 1.9949 -6.3831 -2.8020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182029002.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:06 Heat of formation + Delta-G solvation = -98.595157 kcal Electronic energy + Delta-G solvation = -21494.005442 eV Core-core repulsion = 18443.433539 eV Total energy + Delta-G solvation = -3050.571903 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.25430 -39.17446 -37.20705 -35.24017 -34.62200 -33.24911 -31.54962 -30.55665 -29.58900 -26.25670 -24.45407 -23.30032 -22.49746 -22.09582 -20.81083 -20.52054 -18.53246 -18.01459 -17.65671 -16.74869 -16.56511 -16.21198 -15.76137 -15.54695 -15.00296 -14.87876 -14.68836 -14.44206 -14.32052 -14.01183 -13.51176 -13.20178 -12.97081 -12.92017 -12.78492 -12.67988 -12.43744 -12.25709 -11.95697 -11.88513 -11.82437 -11.43474 -11.30696 -11.23367 -10.81300 -10.66969 -10.61311 -10.56142 -10.43476 -9.01821 -8.18922 -6.31537 1.39809 1.42543 1.53247 1.70104 2.41028 2.69629 3.14034 3.45147 3.71773 3.96357 4.00629 4.10136 4.25587 4.36352 4.43682 4.48095 4.57513 4.60773 4.68535 4.74585 4.75669 4.82929 4.86819 4.93104 4.96037 5.12349 5.20754 5.27563 5.35600 5.41437 5.44762 5.47044 5.53974 5.69648 5.73489 5.77253 5.83998 5.98178 6.20043 6.48177 6.52087 6.71241 6.87449 7.38115 7.44261 8.93626 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019710 B = 0.004553 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.279453 B = 6147.772112 C = 6983.298152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.034 3.966 10 C 0.086 3.914 11 N -0.692 5.692 12 C 0.103 3.897 13 H 0.081 0.919 14 C -0.172 4.172 15 C 0.508 3.492 16 N -0.840 5.840 17 O -0.570 6.570 18 C -0.076 4.076 19 C -0.111 4.111 20 C -0.114 4.114 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.100 4.100 24 H 0.263 0.737 25 H -0.013 1.013 26 H -0.020 1.020 27 H 0.058 0.942 28 H 0.018 0.982 29 H 0.340 0.660 30 H 0.133 0.867 31 H 0.098 0.902 32 H 0.416 0.584 33 H 0.404 0.596 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.041 0.959 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.608 -21.299 2.453 23.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.580 4.580 8 H 0.082 0.918 9 C -0.003 4.003 10 C -0.043 4.043 11 N -0.326 5.326 12 C -0.008 4.008 13 H 0.099 0.901 14 C -0.213 4.213 15 C 0.294 3.706 16 N -0.405 5.405 17 O -0.449 6.449 18 C -0.095 4.095 19 C -0.149 4.149 20 C -0.152 4.152 21 C -0.152 4.152 22 C -0.157 4.157 23 C -0.138 4.138 24 H 0.072 0.928 25 H 0.005 0.995 26 H -0.002 1.002 27 H 0.076 0.924 28 H 0.036 0.964 29 H 0.162 0.838 30 H 0.151 0.849 31 H 0.116 0.884 32 H 0.247 0.753 33 H 0.235 0.765 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.708 -21.053 1.340 22.822 hybrid contribution 0.170 1.135 1.342 1.766 sum 8.877 -19.918 2.681 21.971 Atomic orbital electron populations 1.70150 1.08078 1.27738 1.51566 1.26052 0.95733 1.03609 0.94611 0.85371 0.78638 0.78011 0.78534 1.19737 1.20825 1.18328 1.21630 0.93586 0.92078 1.50737 0.91774 1.18882 0.94350 0.92824 0.94282 1.21798 0.95236 0.88834 0.98457 1.60467 1.23747 1.00996 1.47407 1.21514 0.94499 0.91033 0.93708 0.90115 1.22464 0.96770 1.05084 0.97024 1.21017 0.90998 0.75541 0.83000 1.43784 1.13893 1.69100 1.13678 1.90716 1.28660 1.54180 1.71389 1.21236 0.98479 0.93883 0.95912 1.21639 0.97663 0.94840 1.00757 1.21488 0.99908 0.97702 0.96088 1.21516 0.98630 0.97434 0.97605 1.21545 0.98264 0.96205 0.99638 1.21321 0.99398 0.97193 0.95900 0.92840 0.99460 1.00183 0.92360 0.96368 0.83812 0.84939 0.88351 0.75261 0.76475 0.91065 0.91507 0.91004 0.93026 0.90447 0.91426 0.91756 0.93348 0.92567 0.94053 0.93272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.57 13.29 21.45 0.28 -59.28 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.54 -32.00 9.11 25.60 0.23 -31.76 16 8 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.03 1.95 5.28 29.85 0.16 2.10 16 10 C 0.09 3.78 5.49 86.30 0.47 4.26 16 11 N -0.69 -27.14 5.15 -491.56 -2.53 -29.67 16 12 C 0.10 2.96 1.84 44.92 0.08 3.04 16 13 H 0.08 2.24 7.65 -2.39 -0.02 2.22 16 14 C -0.17 -3.63 5.40 29.85 0.16 -3.47 16 15 C 0.51 12.40 7.28 87.66 0.64 13.04 16 16 N -0.84 -12.74 8.87 -173.54 -1.54 -14.28 16 17 O -0.57 -19.61 12.73 -3.04 -0.04 -19.64 16 18 C -0.08 -2.08 1.69 -10.80 -0.02 -2.10 16 19 C -0.11 -2.17 4.95 30.59 0.15 -2.02 16 20 C -0.11 -2.09 5.92 30.59 0.18 -1.91 16 21 C -0.11 -2.27 5.92 30.60 0.18 -2.08 16 22 C -0.12 -3.06 5.92 30.61 0.18 -2.88 16 23 C -0.10 -3.08 5.00 30.60 0.15 -2.92 16 24 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 25 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 26 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 27 H 0.06 2.52 7.92 -2.39 -0.02 2.50 16 28 H 0.02 0.76 7.93 -2.39 -0.02 0.74 16 29 H 0.34 14.37 5.84 -89.69 -0.52 13.84 16 30 H 0.13 1.79 6.47 -2.39 -0.02 1.77 16 31 H 0.10 1.99 7.93 -2.39 -0.02 1.97 16 32 H 0.42 3.32 8.83 -92.71 -0.82 2.50 16 33 H 0.40 5.71 8.93 -92.71 -0.83 4.89 16 34 H 0.07 2.31 5.57 -2.39 -0.01 2.29 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.14 6.52 -2.38 -0.02 1.12 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 43 H 0.04 1.58 7.48 -2.39 -0.02 1.57 16 44 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -74.93 338.72 0.06 -74.87 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: -1.17 Total: 27.12 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 3.04 Total: -26.38 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -3.79 Total: -103.23 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.04 Total: -19.64 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -74.93 0.06 -74.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182029002.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.724 kcal (2) G-P(sol) polarization free energy of solvation -74.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds