Wall clock time and date at job start Mon Mar 30 2020 00:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00202 * 2 1 4 4 H 1.48495 * 109.47286 * 270.00623 * 3 2 1 5 5 H 1.48498 * 109.46916 * 30.00568 * 3 2 1 6 6 H 1.48497 * 109.47071 * 150.00224 * 3 2 1 7 7 C 1.37880 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00336 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99844 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46940 * 180.02562 * 9 7 2 11 11 O 1.45204 * 109.46910 * 180.02562 * 10 9 7 12 12 C 1.34231 * 117.00081 * 179.97438 * 11 10 9 13 13 O 1.20830 * 119.99508 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00240 * 179.97438 * 12 11 10 15 15 C 1.52989 * 109.47165 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47290 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.47469 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.46817 * 64.99892 * 17 16 15 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47233 * 184.99697 * 17 16 15 23 23 H 0.97001 * 120.00052 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47278 * 59.99486 * 9 7 2 25 25 H 1.09003 * 109.47193 * 299.99411 * 9 7 2 26 26 H 1.08996 * 109.47358 * 60.00122 * 10 9 7 27 27 H 1.09003 * 109.46670 * 299.99698 * 10 9 7 28 28 H 1.08999 * 109.46957 * 59.99889 * 14 12 11 29 29 H 1.09006 * 109.46969 * 300.00413 * 14 12 11 30 30 H 1.08997 * 109.47705 * 59.99491 * 15 14 12 31 31 H 1.09006 * 109.47323 * 299.99962 * 15 14 12 32 32 H 1.09008 * 109.47149 * 59.99652 * 16 15 14 33 33 H 1.08997 * 109.47163 * 299.99722 * 16 15 14 34 34 H 1.09002 * 109.47070 * 305.00072 * 17 16 15 35 35 H 1.08996 * 109.47853 * 300.00202 * 18 17 16 36 36 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 37 37 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 39 39 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 40 40 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 41 41 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 43 43 H 1.08992 * 109.47399 * 300.00166 * 22 17 16 44 44 H 1.09004 * 109.46724 * 60.00652 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6367 -0.0023 11 8 5.4735 -2.6367 -0.0022 12 6 6.0829 -3.8327 -0.0027 13 8 5.4248 -4.8460 -0.0035 14 6 7.5878 -3.9116 -0.0032 15 6 8.0216 -5.3787 -0.0043 16 6 9.5494 -5.4589 -0.0055 17 6 9.9832 -6.9261 -0.0059 18 6 9.5422 -7.5879 -1.3129 19 6 9.9765 -9.0549 -1.3137 20 6 11.4993 -9.1361 -1.1894 21 6 11.9404 -8.4743 0.1176 22 6 11.5060 -7.0077 0.1185 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6804 0.8887 25 1 3.8745 -0.6802 -0.8912 26 1 3.6578 -3.1499 -0.8924 27 1 3.6585 -3.1510 0.8876 28 1 7.9778 -3.4176 0.8867 29 1 7.9772 -3.4172 -0.8933 30 1 7.6315 -5.8724 -0.8943 31 1 7.6321 -5.8734 0.8856 32 1 9.9399 -4.9651 0.8845 33 1 9.9385 -4.9644 -0.8955 34 1 9.5217 -7.4417 0.8363 35 1 8.4574 -7.5297 -1.4017 36 1 10.0037 -7.0723 -2.1551 37 1 9.6627 -9.5263 -2.2451 38 1 9.5152 -9.5708 -0.4715 39 1 11.9606 -8.6202 -2.0316 40 1 11.8086 -10.1813 -1.1895 41 1 13.0252 -8.5325 0.2063 42 1 11.4791 -8.9902 0.9597 43 1 11.9675 -6.4922 -0.7235 44 1 11.8202 -6.5363 1.0498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194207542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:09 Heat of formation + Delta-G solvation = -145.749819 kcal Electronic energy + Delta-G solvation = -19887.151930 eV Core-core repulsion = 16802.242497 eV Total energy + Delta-G solvation = -3084.909434 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.05888 -39.10987 -36.38558 -34.88735 -33.30543 -31.55805 -31.03488 -30.63829 -27.22805 -25.12085 -23.37907 -22.59672 -20.98672 -20.65192 -20.25384 -19.95081 -17.43708 -16.57102 -16.43242 -15.96763 -15.51207 -15.24109 -14.53379 -14.34340 -14.24201 -14.15560 -13.46503 -13.20661 -13.09270 -12.69809 -12.44916 -12.41235 -12.03844 -11.70841 -11.57770 -11.42731 -11.39384 -11.26536 -11.18625 -10.83051 -10.70291 -10.68535 -10.54825 -10.32002 -10.16933 -9.95576 -9.83948 -9.68659 -9.34514 -8.62440 -6.12960 -4.14077 2.55832 3.15505 3.27737 3.35028 3.39575 4.33315 4.38491 4.39575 4.45470 4.75385 4.78833 4.83612 4.97923 5.06592 5.16579 5.20502 5.20899 5.24086 5.27014 5.36601 5.40839 5.51250 5.54505 5.65169 5.69583 5.72753 5.84249 5.84782 5.92716 5.96881 5.98633 6.00037 6.01615 6.09460 6.21504 6.26387 6.46427 6.83570 7.20758 7.23272 7.62701 8.17984 8.39900 8.88763 9.46596 10.99598 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.054843 B = 0.002461 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.424074 B =11372.998712 C =11695.629633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.010 4.010 10 C 0.082 3.918 11 O -0.364 6.364 12 C 0.453 3.547 13 O -0.517 6.517 14 C -0.115 4.115 15 C -0.110 4.110 16 C -0.115 4.115 17 C -0.087 4.087 18 C -0.118 4.118 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.114 4.114 23 H 0.266 0.734 24 H 0.028 0.972 25 H 0.023 0.977 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.811 -14.341 -0.894 29.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.047 4.047 10 C 0.009 3.991 11 O -0.281 6.281 12 C 0.296 3.704 13 O -0.406 6.406 14 C -0.153 4.153 15 C -0.147 4.147 16 C -0.152 4.152 17 C -0.105 4.105 18 C -0.156 4.156 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.152 4.152 23 H 0.076 0.924 24 H 0.046 0.954 25 H 0.042 0.958 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 25.401 -14.496 -0.892 29.260 hybrid contribution 0.114 0.839 -0.020 0.847 sum 25.515 -13.657 -0.912 28.954 Atomic orbital electron populations 1.69899 1.06273 1.27195 1.50137 1.24950 0.94787 0.99210 0.94150 0.86736 0.80411 0.83241 0.78730 1.20062 1.21169 1.18772 1.20852 0.88320 0.95032 1.52329 0.90670 1.19624 0.96998 0.90247 0.97838 1.23358 0.72512 1.01486 1.01703 1.86487 1.26206 1.32500 1.82860 1.23654 0.92017 0.82013 0.72692 1.90637 1.67550 1.36689 1.45745 1.21402 0.88598 0.99772 1.05518 1.21482 0.95277 0.94057 1.03934 1.21646 0.95069 0.96261 1.02249 1.21159 0.95397 0.95622 0.98339 1.21660 1.01252 0.95272 0.97376 1.21544 0.95667 0.96927 1.01704 1.21542 0.96154 1.00215 0.97827 1.21524 1.00312 0.96053 0.97872 1.21578 0.95517 0.96353 1.01736 0.92443 0.95405 0.95845 0.91790 0.91777 0.88046 0.88043 0.90780 0.91066 0.91723 0.91733 0.91112 0.91407 0.92054 0.92163 0.92052 0.92136 0.92353 0.92270 0.92085 0.92036 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.53 -15.15 9.66 -34.44 -0.33 -15.48 16 8 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 9 C -0.01 -0.24 4.42 -27.88 -0.12 -0.36 16 10 C 0.08 1.79 5.40 37.16 0.20 1.99 16 11 O -0.36 -6.98 10.22 -39.26 -0.40 -7.38 16 12 C 0.45 7.54 7.96 36.00 0.29 7.83 16 13 O -0.52 -10.03 15.73 -18.75 -0.30 -10.33 16 14 C -0.12 -1.27 5.81 -27.89 -0.16 -1.44 16 15 C -0.11 -1.10 4.26 -26.74 -0.11 -1.22 16 16 C -0.11 -0.88 4.68 -26.73 -0.13 -1.00 16 17 C -0.09 -0.65 2.19 -90.62 -0.20 -0.85 16 18 C -0.12 -0.92 4.96 -26.73 -0.13 -1.05 16 19 C -0.12 -0.87 5.92 -26.73 -0.16 -1.02 16 20 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 21 C -0.12 -0.76 5.92 -26.76 -0.16 -0.92 16 22 C -0.11 -0.76 5.20 -26.76 -0.14 -0.90 16 23 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 25 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 26 H 0.06 1.41 8.13 -51.93 -0.42 0.98 16 27 H 0.06 1.41 8.13 -51.93 -0.42 0.99 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.81 6.52 -51.93 -0.34 0.47 16 31 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 32 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.59 6.57 -51.93 -0.34 0.25 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -31.46 348.43 -8.97 -40.43 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -8.22 Total: -4.74 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -1.41 Total: -13.36 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.77 Total: -26.73 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.70 Total: -17.71 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.46 -8.97 -40.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194207542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.323 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds