Wall clock time and date at job start Mon Mar 30 2020 00:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00202 * 2 1 4 4 H 1.48495 * 109.47286 * 270.00623 * 3 2 1 5 5 H 1.48498 * 109.46916 * 30.00568 * 3 2 1 6 6 H 1.48497 * 109.47071 * 150.00224 * 3 2 1 7 7 C 1.37880 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00336 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99844 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46940 * 180.02562 * 9 7 2 11 11 O 1.45204 * 109.46910 * 180.02562 * 10 9 7 12 12 C 1.34231 * 117.00081 * 179.97438 * 11 10 9 13 13 O 1.20830 * 119.99508 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00240 * 179.97438 * 12 11 10 15 15 C 1.52989 * 109.47165 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47290 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.47469 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.46817 * 64.99892 * 17 16 15 19 19 C 1.52999 * 109.47317 * 179.97438 * 18 17 16 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 22 22 C 1.53000 * 109.47233 * 184.99697 * 17 16 15 23 23 H 0.97001 * 120.00052 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47278 * 59.99486 * 9 7 2 25 25 H 1.09003 * 109.47193 * 299.99411 * 9 7 2 26 26 H 1.08996 * 109.47358 * 60.00122 * 10 9 7 27 27 H 1.09003 * 109.46670 * 299.99698 * 10 9 7 28 28 H 1.08999 * 109.46957 * 59.99889 * 14 12 11 29 29 H 1.09006 * 109.46969 * 300.00413 * 14 12 11 30 30 H 1.08997 * 109.47705 * 59.99491 * 15 14 12 31 31 H 1.09006 * 109.47323 * 299.99962 * 15 14 12 32 32 H 1.09008 * 109.47149 * 59.99652 * 16 15 14 33 33 H 1.08997 * 109.47163 * 299.99722 * 16 15 14 34 34 H 1.09002 * 109.47070 * 305.00072 * 17 16 15 35 35 H 1.08996 * 109.47853 * 300.00202 * 18 17 16 36 36 H 1.09002 * 109.47153 * 60.00231 * 18 17 16 37 37 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 38 38 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 39 39 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 40 40 H 1.09001 * 109.46812 * 179.97438 * 20 19 18 41 41 H 1.08993 * 109.47194 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.46695 * 59.99734 * 21 20 19 43 43 H 1.08992 * 109.47399 * 300.00166 * 22 17 16 44 44 H 1.09004 * 109.46724 * 60.00652 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6367 -0.0023 11 8 5.4735 -2.6367 -0.0022 12 6 6.0829 -3.8327 -0.0027 13 8 5.4248 -4.8460 -0.0035 14 6 7.5878 -3.9116 -0.0032 15 6 8.0216 -5.3787 -0.0043 16 6 9.5494 -5.4589 -0.0055 17 6 9.9832 -6.9261 -0.0059 18 6 9.5422 -7.5879 -1.3129 19 6 9.9765 -9.0549 -1.3137 20 6 11.4993 -9.1361 -1.1894 21 6 11.9404 -8.4743 0.1176 22 6 11.5060 -7.0077 0.1185 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6804 0.8887 25 1 3.8745 -0.6802 -0.8912 26 1 3.6578 -3.1499 -0.8924 27 1 3.6585 -3.1510 0.8876 28 1 7.9778 -3.4176 0.8867 29 1 7.9772 -3.4172 -0.8933 30 1 7.6315 -5.8724 -0.8943 31 1 7.6321 -5.8734 0.8856 32 1 9.9399 -4.9651 0.8845 33 1 9.9385 -4.9644 -0.8955 34 1 9.5217 -7.4417 0.8363 35 1 8.4574 -7.5297 -1.4017 36 1 10.0037 -7.0723 -2.1551 37 1 9.6627 -9.5263 -2.2451 38 1 9.5152 -9.5708 -0.4715 39 1 11.9606 -8.6202 -2.0316 40 1 11.8086 -10.1813 -1.1895 41 1 13.0252 -8.5325 0.2063 42 1 11.4791 -8.9902 0.9597 43 1 11.9675 -6.4922 -0.7235 44 1 11.8202 -6.5363 1.0498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194207542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:09 Heat of formation + Delta-G solvation = -161.503976 kcal Electronic energy + Delta-G solvation = -19887.835082 eV Core-core repulsion = 16802.242497 eV Total energy + Delta-G solvation = -3085.592585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.46449 -39.71916 -37.85570 -35.70770 -35.40111 -32.91049 -32.08588 -31.56146 -28.23593 -26.83701 -24.19704 -23.31548 -22.61593 -21.74663 -21.26021 -20.55135 -19.23416 -18.28934 -17.78871 -17.22864 -16.32298 -16.30051 -16.14799 -15.29232 -15.05688 -14.95507 -14.78210 -14.58435 -14.22969 -13.93827 -13.49833 -13.26908 -13.11780 -13.01424 -12.71795 -12.51783 -12.47281 -12.30767 -12.21718 -11.94260 -11.82898 -11.80599 -11.57938 -11.52119 -11.44444 -11.40728 -11.25991 -10.82703 -10.82367 -10.73076 -8.35562 -6.44128 1.22352 1.37708 1.39632 1.52497 1.78861 2.33767 2.99045 3.66630 3.72091 3.83478 3.91717 4.07593 4.12058 4.15758 4.18637 4.33251 4.35708 4.52304 4.60891 4.61782 4.65064 4.70049 4.70458 4.73270 4.83569 4.87206 5.01164 5.05494 5.13625 5.18337 5.22778 5.27362 5.30208 5.33297 5.40256 5.42646 5.47586 5.49658 5.57111 5.61924 5.67920 6.14175 6.61810 6.76380 7.20969 8.80544 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.054843 B = 0.002461 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.424074 B =11372.998712 C =11695.629633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.010 3.990 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.243 1.243 7 C -0.545 4.545 8 H 0.033 0.967 9 C -0.003 4.003 10 C 0.092 3.908 11 O -0.364 6.364 12 C 0.448 3.552 13 O -0.550 6.550 14 C -0.105 4.105 15 C -0.106 4.106 16 C -0.107 4.107 17 C -0.086 4.086 18 C -0.118 4.118 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.111 4.111 23 H 0.271 0.729 24 H 0.036 0.964 25 H 0.035 0.965 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.091 -13.035 -0.915 31.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.167 1.167 7 C -0.582 4.582 8 H 0.051 0.949 9 C -0.041 4.041 10 C 0.019 3.981 11 O -0.281 6.281 12 C 0.293 3.707 13 O -0.441 6.441 14 C -0.142 4.142 15 C -0.144 4.144 16 C -0.144 4.144 17 C -0.105 4.105 18 C -0.156 4.156 19 C -0.160 4.160 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.149 4.149 23 H 0.080 0.920 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 28.706 -13.214 -0.914 31.614 hybrid contribution -0.951 0.290 -0.019 0.994 sum 27.755 -12.924 -0.932 30.630 Atomic orbital electron populations 1.70048 1.08354 1.28663 1.51301 1.26001 0.95730 1.03720 0.93383 0.85562 0.79510 0.77460 0.79582 1.18717 1.20555 1.16662 1.21127 0.90814 0.93756 1.52533 0.94858 1.19462 0.94107 0.91990 0.98507 1.22902 0.74656 0.99731 1.00835 1.86483 1.24112 1.34123 1.83341 1.24886 0.94063 0.80629 0.71075 1.90633 1.68706 1.37536 1.47233 1.21607 0.83776 1.00834 1.07944 1.21457 0.97087 0.93209 1.02632 1.21595 0.92875 0.96489 1.03444 1.21140 0.96177 0.95494 0.97646 1.21649 1.00325 0.95771 0.97823 1.21553 0.96426 0.96545 1.01472 1.21534 0.95332 1.00654 0.98071 1.21536 1.00844 0.95900 0.97553 1.21554 0.94518 0.96568 1.02234 0.92029 0.94569 0.94678 0.92745 0.92776 0.85385 0.85392 0.92145 0.92546 0.90400 0.90553 0.92098 0.92904 0.91686 0.92161 0.92659 0.91868 0.91875 0.91369 0.92497 0.91593 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.07 13.96 21.45 0.30 -58.77 16 2 C 0.01 0.56 5.47 84.66 0.46 1.02 16 3 Si 0.96 43.51 27.47 68.60 1.88 45.40 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 7 C -0.54 -31.93 9.66 25.60 0.25 -31.69 16 8 H 0.03 2.15 7.99 -2.91 -0.02 2.13 16 9 C 0.00 -0.16 4.42 29.85 0.13 -0.02 16 10 C 0.09 4.04 5.40 71.98 0.39 4.43 16 11 O -0.36 -13.43 10.22 -51.42 -0.53 -13.96 16 12 C 0.45 14.38 7.96 71.23 0.57 14.95 16 13 O -0.55 -21.49 15.73 21.95 0.35 -21.14 16 14 C -0.10 -2.02 5.81 29.84 0.17 -1.84 16 15 C -0.11 -1.96 4.26 30.59 0.13 -1.83 16 16 C -0.11 -1.35 4.68 30.59 0.14 -1.20 16 17 C -0.09 -1.15 2.19 -10.79 -0.02 -1.17 16 18 C -0.12 -1.73 4.96 30.59 0.15 -1.58 16 19 C -0.12 -1.68 5.92 30.60 0.18 -1.50 16 20 C -0.12 -1.36 5.92 30.60 0.18 -1.18 16 21 C -0.12 -1.32 5.92 30.58 0.18 -1.14 16 22 C -0.11 -1.22 5.20 30.58 0.16 -1.06 16 23 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 24 H 0.04 1.68 7.20 -2.39 -0.02 1.67 16 25 H 0.03 1.61 7.57 -2.39 -0.02 1.59 16 26 H 0.05 2.45 8.13 -2.39 -0.02 2.43 16 27 H 0.05 2.44 8.13 -2.39 -0.02 2.42 16 28 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.13 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.06 1.29 6.52 -2.39 -0.02 1.27 16 31 H 0.06 1.21 8.10 -2.38 -0.02 1.19 16 32 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 0.92 6.57 -2.39 -0.02 0.91 16 36 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -69.08 348.43 5.95 -63.13 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 0.87 Total: 9.16 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: 3.08 Total: -23.82 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.30 Total: -58.77 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -0.18 Total: -35.10 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.40 kcal Total: -69.08 5.95 -63.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194207542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.373 kcal (2) G-P(sol) polarization free energy of solvation -69.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds