Wall clock time and date at job start Mon Mar 30 2020 01:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 H 1.08992 * 109.50755 * 300.07672 * 9 7 2 11 11 C 1.53121 * 109.50574 * 60.20046 * 9 7 2 12 12 C 1.53113 * 109.16288 * 177.59193 * 11 9 7 13 13 C 1.53039 * 109.28048 * 302.34387 * 12 11 9 14 14 N 1.46843 * 109.52049 * 59.17613 * 13 12 11 15 15 C 1.46900 * 110.99883 * 174.16250 * 14 13 12 16 16 C 1.53001 * 109.47180 * 314.21083 * 15 14 13 17 17 N 1.46899 * 109.47270 * 179.97438 * 16 15 14 18 18 C 1.47016 * 111.00310 * 293.63745 * 17 16 15 19 19 C 1.53092 * 109.25649 * 177.60484 * 18 17 16 20 20 O 1.43022 * 109.25901 * 56.85318 * 19 18 17 21 21 C 1.43016 * 113.73482 * 301.32273 * 20 19 18 22 22 C 1.47016 * 111.00197 * 169.99768 * 17 16 15 23 23 C 1.46850 * 111.20242 * 298.26070 * 14 13 12 24 24 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.52140 * 297.49675 * 11 9 7 26 26 H 1.09003 * 109.52339 * 57.68287 * 11 9 7 27 27 H 1.09004 * 109.50379 * 182.39937 * 12 11 9 28 28 H 1.09000 * 109.53331 * 62.30437 * 12 11 9 29 29 H 1.09003 * 109.46039 * 299.16344 * 13 12 11 30 30 H 1.08993 * 109.46242 * 179.19648 * 13 12 11 31 31 H 1.09004 * 109.47026 * 74.21233 * 15 14 13 32 32 H 1.09003 * 109.47568 * 194.21476 * 15 14 13 33 33 H 1.09004 * 109.47264 * 300.00004 * 16 15 14 34 34 H 1.09001 * 109.46865 * 60.00202 * 16 15 14 35 35 H 1.09002 * 109.50320 * 297.53873 * 18 17 16 36 36 H 1.09001 * 109.50658 * 57.67145 * 18 17 16 37 37 H 1.08998 * 109.51270 * 296.91227 * 19 18 17 38 38 H 1.09004 * 109.50652 * 176.78411 * 19 18 17 39 39 H 1.08999 * 109.50995 * 298.73972 * 21 20 19 40 40 H 1.09002 * 109.50450 * 178.60540 * 21 20 19 41 41 H 1.09000 * 109.50628 * 302.33341 * 22 17 16 42 42 H 1.09005 * 109.49873 * 62.41575 * 22 17 16 43 43 H 1.09005 * 109.45658 * 301.72575 * 23 14 13 44 44 H 1.09007 * 109.45383 * 181.75728 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 1 0.6228 -2.5567 0.8893 11 6 0.3747 -2.5835 -1.2523 12 6 -0.3409 -3.9370 -1.2749 13 6 0.6991 -5.0591 -1.2372 14 7 1.5112 -4.9348 -0.0202 15 6 2.4283 -6.0739 0.1194 16 6 1.6711 -7.3748 -0.1550 17 7 2.5883 -8.5138 -0.0161 18 6 3.6203 -8.4901 -1.0629 19 6 4.5869 -9.6572 -0.8455 20 8 3.8513 -10.8838 -0.8381 21 6 2.8382 -10.9414 0.1697 22 6 1.8539 -9.7873 -0.0373 23 6 2.2449 -3.6629 0.0011 24 1 -0.4850 0.8401 0.0004 25 1 -0.3633 -1.7815 -1.2352 26 1 0.9988 -2.4865 -2.1406 27 1 -0.9333 -4.0202 -2.1860 28 1 -0.9951 -4.0179 -0.4068 29 1 1.3438 -4.9862 -2.1131 30 1 0.1923 -6.0241 -1.2388 31 1 3.2457 -5.9718 -0.5944 32 1 2.8307 -6.0945 1.1322 33 1 0.8536 -7.4769 0.5588 34 1 1.2687 -7.3542 -1.1678 35 1 3.1487 -8.5854 -2.0410 36 1 4.1684 -7.5493 -1.0124 37 1 5.0981 -9.5336 0.1092 38 1 5.3202 -9.6775 -1.6517 39 1 3.2985 -10.8550 1.1539 40 1 2.3068 -11.8904 0.0977 41 1 1.1126 -9.7933 0.7618 42 1 1.3535 -9.9027 -0.9988 43 1 2.8824 -3.5966 -0.8806 44 1 2.8608 -3.6141 0.8992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259198916.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:33 Heat of formation + Delta-G solvation = -60.261464 kcal Electronic energy + Delta-G solvation = -21267.988200 eV Core-core repulsion = 18219.078570 eV Total energy + Delta-G solvation = -3048.909629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.72141 -39.78253 -37.13151 -35.44656 -33.57230 -32.15609 -31.82150 -30.17843 -27.13518 -26.94880 -25.02332 -24.44901 -23.43767 -21.89112 -21.19629 -20.35500 -18.45679 -17.73593 -17.14202 -16.81554 -16.42282 -16.24214 -15.99956 -15.81994 -15.60186 -15.01504 -14.94535 -14.71852 -14.24479 -14.03025 -13.89957 -13.27477 -13.17073 -12.94873 -12.87415 -12.70346 -12.51255 -12.34884 -12.17836 -11.97377 -11.81878 -11.72225 -11.44901 -11.35807 -10.90383 -10.66571 -10.64522 -10.38230 -9.41933 -9.14465 -8.08536 -6.22633 1.40092 1.41809 1.53159 2.41562 2.58169 2.94270 3.18496 3.26503 3.82349 3.92729 3.97076 4.05066 4.16222 4.19120 4.26559 4.33269 4.35189 4.42059 4.50101 4.59339 4.61555 4.69149 4.73049 4.81168 4.84854 4.88164 4.91105 4.94109 5.01079 5.04099 5.09089 5.17271 5.38204 5.50839 5.63075 5.88151 5.92416 5.96302 6.11319 6.17004 6.19493 6.34200 6.44717 6.89976 7.45255 8.96363 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040917 B = 0.003516 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.145571 B = 7961.458811 C = 8359.091650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.051 0.949 9 C 0.052 3.948 10 H -0.002 1.002 11 C -0.104 4.104 12 C -0.111 4.111 13 C 0.063 3.937 14 N -0.546 5.546 15 C 0.066 3.934 16 C 0.065 3.935 17 N -0.544 5.544 18 C 0.014 3.986 19 C 0.065 3.935 20 O -0.405 6.405 21 C 0.063 3.937 22 C 0.018 3.982 23 C 0.084 3.916 24 H 0.260 0.740 25 H 0.058 0.942 26 H 0.021 0.979 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.022 0.978 30 H 0.092 0.908 31 H 0.028 0.972 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.112 0.888 39 H 0.062 0.938 40 H 0.117 0.883 41 H 0.098 0.902 42 H 0.038 0.962 43 H 0.014 0.986 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.564 -20.072 -1.994 20.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.575 4.575 8 H 0.069 0.931 9 C 0.033 3.967 10 H 0.016 0.984 11 C -0.142 4.142 12 C -0.149 4.149 13 C -0.065 4.065 14 N -0.271 5.271 15 C -0.062 4.062 16 C -0.063 4.063 17 N -0.270 5.270 18 C -0.114 4.114 19 C -0.011 4.011 20 O -0.324 6.324 21 C -0.014 4.014 22 C -0.110 4.110 23 C -0.044 4.044 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.040 0.960 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.110 0.890 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.135 0.865 41 H 0.117 0.883 42 H 0.056 0.944 43 H 0.032 0.968 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.377 -20.083 -1.264 20.594 hybrid contribution 0.317 1.595 -1.219 2.033 sum 4.695 -18.489 -2.484 19.236 Atomic orbital electron populations 1.70042 1.07162 1.27015 1.51235 1.25729 0.95684 1.02347 0.94772 0.85555 0.79066 0.79710 0.77608 1.19178 1.20601 1.20592 1.21552 0.92979 0.92191 1.50771 0.93093 1.18591 0.92997 0.91261 0.93814 0.98386 1.21462 0.99098 0.96343 0.97321 1.21600 0.97550 0.94819 1.00956 1.22135 0.95207 0.99254 0.89913 1.61968 1.24837 1.02036 1.38302 1.22024 0.93630 0.89203 1.01366 1.22132 0.94793 0.88965 1.00390 1.62116 1.14749 1.02646 1.47463 1.22873 0.94939 1.00793 0.92842 1.22743 0.93139 0.82173 1.03089 1.87952 1.50362 1.37582 1.56503 1.22808 0.88588 0.98511 0.91473 1.22846 0.97056 0.89247 1.01827 1.21966 0.95284 0.88757 0.98379 0.93056 0.92354 0.96018 0.91263 0.92930 0.96022 0.89027 0.95376 0.90654 0.89652 0.94236 0.94610 0.89510 0.91941 0.86969 0.91954 0.86483 0.88329 0.94355 0.96779 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.55 11.36 21.45 0.24 -53.31 16 2 C 0.01 0.75 5.30 84.66 0.45 1.20 16 3 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.54 -30.15 8.56 25.60 0.22 -29.93 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.05 2.70 2.26 -11.49 -0.03 2.67 16 10 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 11 C -0.10 -5.04 5.03 30.67 0.15 -4.89 16 12 C -0.11 -4.29 6.09 30.65 0.19 -4.10 16 13 C 0.06 2.09 4.85 86.33 0.42 2.50 16 14 N -0.55 -19.70 4.81 -896.34 -4.31 -24.00 16 15 C 0.07 1.90 5.21 86.30 0.45 2.35 16 16 C 0.06 1.54 4.21 86.30 0.36 1.90 16 17 N -0.54 -11.53 4.73 -895.20 -4.23 -15.76 16 18 C 0.01 0.27 5.44 86.31 0.47 0.74 16 19 C 0.07 1.14 7.01 72.01 0.50 1.64 16 20 O -0.41 -8.10 10.83 -148.98 -1.61 -9.71 16 21 C 0.06 0.99 7.01 72.01 0.50 1.49 16 22 C 0.02 0.32 5.64 86.31 0.49 0.80 16 23 C 0.08 3.61 4.65 86.33 0.40 4.01 16 24 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 25 H 0.06 3.20 6.17 -2.39 -0.01 3.18 16 26 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 2.32 8.14 -2.38 -0.02 2.31 16 28 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 2.54 5.81 -2.39 -0.01 2.52 16 31 H 0.03 0.81 6.45 -2.38 -0.02 0.79 16 32 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.09 2.03 8.04 -2.38 -0.02 2.01 16 34 H 0.04 0.94 6.18 -2.39 -0.01 0.92 16 35 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.09 1.76 6.38 -2.39 -0.02 1.75 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.10 1.48 8.09 -2.39 -0.02 1.46 16 42 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 44 H 0.06 2.42 8.12 -2.38 -0.02 2.41 16 Total: -1.00 -62.60 330.98 -2.36 -64.96 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.94 Total: 11.36 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: 4.58 Total: -19.60 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -8.29 Total: -93.07 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -1.61 Total: -9.71 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -62.60 -2.36 -64.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259198916.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.696 kcal (2) G-P(sol) polarization free energy of solvation -62.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds