Wall clock time and date at job start Mon Mar 30 2020 01:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00077 * 2 1 4 4 H 1.48500 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47369 * 300.00083 * 3 2 1 6 6 H 1.48497 * 109.46868 * 59.99961 * 3 2 1 7 7 C 1.37882 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00182 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.54041 * 60.09375 * 9 7 2 11 11 C 1.53125 * 109.50521 * 300.00142 * 9 7 2 12 12 C 1.53114 * 109.16368 * 182.40526 * 11 9 7 13 13 C 1.53037 * 109.31211 * 57.63311 * 12 11 9 14 14 N 1.46854 * 109.52285 * 300.88400 * 13 12 11 15 15 C 1.46895 * 110.99648 * 185.80147 * 14 13 12 16 16 C 1.53002 * 109.47258 * 45.74906 * 15 14 13 17 17 N 1.46898 * 109.47034 * 180.02562 * 16 15 14 18 18 C 1.47020 * 110.99950 * 293.63111 * 17 16 15 19 19 C 1.53095 * 109.26082 * 177.61181 * 18 17 16 20 20 O 1.43018 * 109.25933 * 56.84203 * 19 18 17 21 21 C 1.43013 * 113.74493 * 301.33756 * 20 19 18 22 22 C 1.47016 * 111.00149 * 169.99784 * 17 16 15 23 23 C 1.46840 * 111.23238 * 61.67711 * 14 13 12 24 24 H 0.96999 * 120.00083 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.52257 * 62.49719 * 11 9 7 26 26 H 1.09004 * 109.56800 * 302.34429 * 11 9 7 27 27 H 1.09002 * 109.50377 * 177.59436 * 12 11 9 28 28 H 1.09003 * 109.50316 * 297.67431 * 12 11 9 29 29 H 1.09000 * 109.46159 * 60.85546 * 13 12 11 30 30 H 1.09000 * 109.46461 * 180.82902 * 13 12 11 31 31 H 1.09002 * 109.47426 * 165.74613 * 15 14 13 32 32 H 1.08995 * 109.47097 * 285.74668 * 15 14 13 33 33 H 1.09003 * 109.46840 * 299.99412 * 16 15 14 34 34 H 1.08995 * 109.47261 * 59.99863 * 16 15 14 35 35 H 1.09003 * 109.50519 * 297.54336 * 18 17 16 36 36 H 1.08998 * 109.50601 * 57.66968 * 18 17 16 37 37 H 1.09001 * 109.50202 * 296.91380 * 19 18 17 38 38 H 1.08995 * 109.54287 * 176.80396 * 19 18 17 39 39 H 1.09003 * 109.50359 * 298.73662 * 21 20 19 40 40 H 1.08990 * 109.54618 * 178.62673 * 21 20 19 41 41 H 1.08999 * 109.50196 * 302.32726 * 22 17 16 42 42 H 1.09005 * 109.50435 * 62.45008 * 22 17 16 43 43 H 1.09001 * 109.46294 * 178.26219 * 23 14 13 44 44 H 1.09003 * 109.45458 * 58.29272 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 1 0.6256 -2.5582 -0.8925 11 6 0.3699 -2.5819 1.2479 12 6 -0.3457 -3.9354 1.2695 13 6 0.6937 -5.0581 1.2368 14 7 1.5111 -4.9348 0.0230 15 6 2.4286 -6.0741 -0.1116 16 6 1.6704 -7.3746 0.1616 17 7 2.5881 -8.5138 0.0275 18 6 3.0398 -8.6657 -1.3633 19 6 4.0377 -9.8238 -1.4466 20 8 3.4229 -11.0133 -0.9440 21 6 2.9715 -10.9009 0.4084 22 6 1.9629 -9.7537 0.5104 23 6 2.2448 -3.6630 0.0029 24 1 -0.4850 0.8400 -0.0004 25 1 -0.3680 -1.7800 1.2270 26 1 0.9899 -2.4834 2.1390 27 1 -0.9416 -4.0175 2.1786 28 1 -0.9968 -4.0167 0.3991 29 1 1.3352 -4.9848 2.1149 30 1 0.1864 -6.0229 1.2372 31 1 2.8349 -6.0960 -1.1228 32 1 3.2433 -5.9711 0.6051 33 1 1.2642 -7.3528 1.1729 34 1 0.8557 -7.4776 -0.5551 35 1 2.1831 -8.8768 -2.0033 36 1 3.5222 -7.7451 -1.6918 37 1 4.9184 -9.5889 -0.8489 38 1 4.3325 -9.9771 -2.4846 39 1 3.8213 -10.6973 1.0600 40 1 2.4948 -11.8328 0.7123 41 1 1.6592 -9.6273 1.5496 42 1 1.0888 -9.9821 -0.0996 43 1 2.8642 -3.6152 -0.8928 44 1 2.8789 -3.5956 0.8869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259198920.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:37 Heat of formation + Delta-G solvation = -40.386704 kcal Electronic energy + Delta-G solvation = -21227.508426 eV Core-core repulsion = 18179.460631 eV Total energy + Delta-G solvation = -3048.047795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.79737 -38.32593 -36.05542 -33.72646 -31.86276 -31.36443 -30.09611 -28.91238 -26.02118 -25.04168 -24.19301 -23.01853 -21.73952 -20.76563 -20.08303 -18.60972 -16.88243 -16.38430 -16.26874 -15.48588 -15.28370 -15.21897 -14.73085 -14.58039 -14.12174 -13.88564 -13.47911 -13.13625 -12.68908 -12.62747 -12.36114 -12.18302 -11.85634 -11.60956 -11.50409 -11.36647 -10.96679 -10.95182 -10.74204 -10.61685 -10.43630 -10.04317 -9.90145 -9.78860 -9.45637 -9.01501 -8.68423 -8.54304 -8.29432 -7.64817 -5.96705 -4.02796 3.30347 3.38404 3.42062 3.50825 3.68586 4.41846 4.60243 4.69618 4.78785 4.80781 4.93509 5.06474 5.20287 5.30378 5.32701 5.33383 5.41671 5.56677 5.59174 5.68842 5.71004 5.75407 5.81298 6.03825 6.06085 6.11178 6.28474 6.42559 6.51737 6.71438 6.75708 6.78247 6.81918 6.91555 6.98826 7.22668 7.41314 7.66707 7.76406 7.83463 8.09442 8.18575 8.49268 9.01507 9.61499 11.09268 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040161 B = 0.003505 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.028164 B = 7985.569236 C = 8473.251846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.118 4.118 13 C 0.058 3.942 14 N -0.539 5.539 15 C 0.060 3.940 16 C 0.053 3.947 17 N -0.538 5.538 18 C 0.014 3.986 19 C 0.064 3.936 20 O -0.388 6.388 21 C 0.064 3.936 22 C 0.018 3.982 23 C 0.070 3.930 24 H 0.259 0.741 25 H 0.091 0.909 26 H 0.029 0.971 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.023 0.977 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.042 0.958 43 H 0.058 0.942 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.798 -18.656 0.913 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.036 3.964 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.156 4.156 13 C -0.070 4.070 14 N -0.264 5.264 15 C -0.068 4.068 16 C -0.074 4.074 17 N -0.264 5.264 18 C -0.114 4.114 19 C -0.013 4.013 20 O -0.307 6.307 21 C -0.013 4.013 22 C -0.110 4.110 23 C -0.057 4.057 24 H 0.069 0.931 25 H 0.109 0.891 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 3.728 -18.609 0.693 18.991 hybrid contribution 0.285 1.100 0.416 1.211 sum 4.014 -17.509 1.109 17.997 Atomic orbital electron populations 1.69903 1.05840 1.26188 1.50802 1.24941 0.94833 0.98969 0.95155 0.86568 0.80137 0.83944 0.77525 1.19852 1.21048 1.21113 1.21191 0.92871 0.90670 1.50527 0.92792 1.18669 0.92613 0.90293 0.94851 0.94808 1.21652 1.00048 0.94714 0.98459 1.21683 0.97198 0.96565 1.00120 1.22132 0.95734 0.98706 0.90453 1.62069 1.24028 1.02308 1.37999 1.22015 0.94389 0.89479 1.00958 1.22309 0.93694 0.89644 1.01748 1.62193 1.40046 1.03698 1.20447 1.22855 0.99063 1.00118 0.89383 1.22685 0.94749 0.84065 0.99824 1.87966 1.78465 1.35799 1.28465 1.22649 0.96888 0.97944 0.83778 1.22766 0.96529 0.90396 1.01349 1.22300 0.96381 0.88287 0.98765 0.93133 0.89104 0.95183 0.93599 0.92168 0.95883 0.92160 0.91300 0.94660 0.90294 0.93777 0.93817 0.89062 0.92261 0.88473 0.92295 0.88579 0.89674 0.93946 0.92343 0.96229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.40 11.35 55.43 0.63 -24.77 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.51 -14.14 8.56 -34.44 -0.29 -14.44 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.37 2.26 -91.69 -0.21 1.16 16 10 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.11 -2.63 5.02 -26.61 -0.13 -2.77 16 12 C -0.12 -2.31 6.09 -26.65 -0.16 -2.47 16 13 C 0.06 1.01 4.85 -3.83 -0.02 0.99 16 14 N -0.54 -9.99 4.80 -234.67 -1.13 -11.11 16 15 C 0.06 0.92 5.21 -3.83 -0.02 0.90 16 16 C 0.05 0.70 4.20 -3.82 -0.02 0.68 16 17 N -0.54 -6.29 4.73 -234.30 -1.11 -7.40 16 18 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 19 C 0.06 0.61 7.01 37.21 0.26 0.88 16 20 O -0.39 -4.30 10.83 -35.23 -0.38 -4.68 16 21 C 0.06 0.59 7.01 37.21 0.26 0.85 16 22 C 0.02 0.18 5.64 -3.71 -0.02 0.16 16 23 C 0.07 1.49 4.65 -3.84 -0.02 1.48 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 25 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.91 5.82 -51.93 -0.30 0.61 16 31 H 0.07 1.02 6.52 -51.93 -0.34 0.69 16 32 H 0.04 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.08 1.01 6.10 -51.93 -0.32 0.70 16 34 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.97 6.38 -51.93 -0.33 0.64 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 42 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 330.95 15.07 4.99 4.99 Total: -1.00 -29.05 330.95 -10.41 -39.46 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -7.91 Total: -1.93 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -0.49 Total: -10.83 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: -1.61 Total: -43.28 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.38 Total: -4.68 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.05 -10.41 -39.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259198920.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.930 kcal (2) G-P(sol) polarization free energy of solvation -29.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds