Wall clock time and date at job start Mon Mar 30 2020 01:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00077 * 2 1 4 4 H 1.48500 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47369 * 300.00083 * 3 2 1 6 6 H 1.48497 * 109.46868 * 59.99961 * 3 2 1 7 7 C 1.37882 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00182 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.54041 * 60.09375 * 9 7 2 11 11 C 1.53125 * 109.50521 * 300.00142 * 9 7 2 12 12 C 1.53114 * 109.16368 * 182.40526 * 11 9 7 13 13 C 1.53037 * 109.31211 * 57.63311 * 12 11 9 14 14 N 1.46854 * 109.52285 * 300.88400 * 13 12 11 15 15 C 1.46895 * 110.99648 * 185.80147 * 14 13 12 16 16 C 1.53002 * 109.47258 * 45.74906 * 15 14 13 17 17 N 1.46898 * 109.47034 * 180.02562 * 16 15 14 18 18 C 1.47020 * 110.99950 * 293.63111 * 17 16 15 19 19 C 1.53095 * 109.26082 * 177.61181 * 18 17 16 20 20 O 1.43018 * 109.25933 * 56.84203 * 19 18 17 21 21 C 1.43013 * 113.74493 * 301.33756 * 20 19 18 22 22 C 1.47016 * 111.00149 * 169.99784 * 17 16 15 23 23 C 1.46840 * 111.23238 * 61.67711 * 14 13 12 24 24 H 0.96999 * 120.00083 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.52257 * 62.49719 * 11 9 7 26 26 H 1.09004 * 109.56800 * 302.34429 * 11 9 7 27 27 H 1.09002 * 109.50377 * 177.59436 * 12 11 9 28 28 H 1.09003 * 109.50316 * 297.67431 * 12 11 9 29 29 H 1.09000 * 109.46159 * 60.85546 * 13 12 11 30 30 H 1.09000 * 109.46461 * 180.82902 * 13 12 11 31 31 H 1.09002 * 109.47426 * 165.74613 * 15 14 13 32 32 H 1.08995 * 109.47097 * 285.74668 * 15 14 13 33 33 H 1.09003 * 109.46840 * 299.99412 * 16 15 14 34 34 H 1.08995 * 109.47261 * 59.99863 * 16 15 14 35 35 H 1.09003 * 109.50519 * 297.54336 * 18 17 16 36 36 H 1.08998 * 109.50601 * 57.66968 * 18 17 16 37 37 H 1.09001 * 109.50202 * 296.91380 * 19 18 17 38 38 H 1.08995 * 109.54287 * 176.80396 * 19 18 17 39 39 H 1.09003 * 109.50359 * 298.73662 * 21 20 19 40 40 H 1.08990 * 109.54618 * 178.62673 * 21 20 19 41 41 H 1.08999 * 109.50196 * 302.32726 * 22 17 16 42 42 H 1.09005 * 109.50435 * 62.45008 * 22 17 16 43 43 H 1.09001 * 109.46294 * 178.26219 * 23 14 13 44 44 H 1.09003 * 109.45458 * 58.29272 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 1 0.6256 -2.5582 -0.8925 11 6 0.3699 -2.5819 1.2479 12 6 -0.3457 -3.9354 1.2695 13 6 0.6937 -5.0581 1.2368 14 7 1.5111 -4.9348 0.0230 15 6 2.4286 -6.0741 -0.1116 16 6 1.6704 -7.3746 0.1616 17 7 2.5881 -8.5138 0.0275 18 6 3.0398 -8.6657 -1.3633 19 6 4.0377 -9.8238 -1.4466 20 8 3.4229 -11.0133 -0.9440 21 6 2.9715 -10.9009 0.4084 22 6 1.9629 -9.7537 0.5104 23 6 2.2448 -3.6630 0.0029 24 1 -0.4850 0.8400 -0.0004 25 1 -0.3680 -1.7800 1.2270 26 1 0.9899 -2.4834 2.1390 27 1 -0.9416 -4.0175 2.1786 28 1 -0.9968 -4.0167 0.3991 29 1 1.3352 -4.9848 2.1149 30 1 0.1864 -6.0229 1.2372 31 1 2.8349 -6.0960 -1.1228 32 1 3.2433 -5.9711 0.6051 33 1 1.2642 -7.3528 1.1729 34 1 0.8557 -7.4776 -0.5551 35 1 2.1831 -8.8768 -2.0033 36 1 3.5222 -7.7451 -1.6918 37 1 4.9184 -9.5889 -0.8489 38 1 4.3325 -9.9771 -2.4846 39 1 3.8213 -10.6973 1.0600 40 1 2.4948 -11.8328 0.7123 41 1 1.6592 -9.6273 1.5496 42 1 1.0888 -9.9821 -0.0996 43 1 2.8642 -3.6152 -0.8928 44 1 2.8789 -3.5956 0.8869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259198920.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:36 Heat of formation + Delta-G solvation = -60.549211 kcal Electronic energy + Delta-G solvation = -21228.382737 eV Core-core repulsion = 18179.460631 eV Total energy + Delta-G solvation = -3048.922107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.69552 -39.78100 -37.12564 -35.45231 -33.56570 -32.15326 -31.81929 -30.16121 -27.13625 -26.95420 -25.01632 -24.43609 -23.40879 -21.86363 -21.21347 -20.36125 -18.45408 -17.69703 -17.16082 -16.80046 -16.39001 -16.31911 -15.98531 -15.83610 -15.37980 -15.22221 -14.91447 -14.66583 -14.27906 -14.03427 -13.82599 -13.35717 -13.03751 -13.00194 -12.86873 -12.63617 -12.56647 -12.39973 -12.31190 -11.93830 -11.72704 -11.59467 -11.47011 -11.37792 -10.84456 -10.66375 -10.64580 -10.37614 -9.44337 -9.14664 -8.08369 -6.22604 1.40172 1.41869 1.53277 2.41776 2.59189 2.95426 3.18509 3.26720 3.77286 3.94297 4.00392 4.11879 4.18125 4.20472 4.26231 4.34670 4.35632 4.45918 4.51716 4.59790 4.63089 4.69138 4.74066 4.82364 4.85255 4.88437 4.91468 4.93768 5.01733 5.02795 5.11665 5.17390 5.39039 5.51451 5.63436 5.86807 5.93004 5.96680 6.11571 6.17632 6.20178 6.35860 6.45135 6.90045 7.45321 8.96401 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040161 B = 0.003505 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.028164 B = 7985.569236 C = 8473.251846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.051 0.949 9 C 0.052 3.948 10 H -0.003 1.003 11 C -0.104 4.104 12 C -0.112 4.112 13 C 0.062 3.938 14 N -0.548 5.548 15 C 0.065 3.935 16 C 0.065 3.935 17 N -0.545 5.545 18 C 0.013 3.987 19 C 0.065 3.935 20 O -0.405 6.405 21 C 0.063 3.937 22 C 0.017 3.983 23 C 0.084 3.916 24 H 0.260 0.740 25 H 0.058 0.942 26 H 0.022 0.978 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.026 0.974 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.032 0.968 33 H 0.085 0.915 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.113 0.887 39 H 0.061 0.939 40 H 0.117 0.883 41 H 0.098 0.902 42 H 0.038 0.962 43 H 0.055 0.945 44 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.449 -20.097 1.538 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.575 4.575 8 H 0.069 0.931 9 C 0.033 3.967 10 H 0.015 0.985 11 C -0.143 4.143 12 C -0.149 4.149 13 C -0.066 4.066 14 N -0.274 5.274 15 C -0.063 4.063 16 C -0.063 4.063 17 N -0.270 5.270 18 C -0.115 4.115 19 C -0.012 4.012 20 O -0.324 6.324 21 C -0.014 4.014 22 C -0.111 4.111 23 C -0.044 4.044 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.108 0.892 37 H 0.080 0.920 38 H 0.131 0.869 39 H 0.080 0.920 40 H 0.135 0.865 41 H 0.116 0.884 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 4.386 -20.073 1.320 20.589 hybrid contribution 0.072 1.522 0.204 1.538 sum 4.458 -18.550 1.524 19.139 Atomic orbital electron populations 1.70043 1.07163 1.27009 1.51253 1.25729 0.95685 1.02354 0.94771 0.85550 0.79063 0.79695 0.77607 1.19179 1.20608 1.20585 1.21552 0.92984 0.92196 1.50754 0.93091 1.18592 0.92980 0.91267 0.93813 0.98526 1.21464 0.99120 0.96377 0.97303 1.21602 0.97563 0.94846 1.00930 1.22144 0.95141 0.99234 0.90033 1.61984 1.24566 1.02020 1.38792 1.22003 0.93929 0.89284 1.01052 1.22126 0.93321 0.89025 1.01847 1.62194 1.39814 1.04068 1.20961 1.22883 0.99106 1.00616 0.88871 1.22754 0.94266 0.83267 1.00884 1.87949 1.78633 1.36371 1.29471 1.22797 0.96900 0.98615 0.83049 1.22850 0.96540 0.89747 1.01916 1.21959 0.95292 0.88762 0.98382 0.93062 0.92354 0.95930 0.91118 0.93146 0.95609 0.88884 0.91095 0.94954 0.89629 0.94356 0.94505 0.89219 0.92020 0.86891 0.92023 0.86498 0.88353 0.94352 0.92638 0.96691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.59 11.35 21.45 0.24 -53.34 16 2 C 0.01 0.75 5.30 84.66 0.45 1.20 16 3 Si 0.96 44.07 29.54 68.60 2.03 46.09 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.54 -30.17 8.56 25.60 0.22 -29.95 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 9 C 0.05 2.71 2.26 -11.49 -0.03 2.68 16 10 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 11 C -0.10 -5.06 5.02 30.67 0.15 -4.91 16 12 C -0.11 -4.28 6.09 30.64 0.19 -4.10 16 13 C 0.06 2.05 4.85 86.32 0.42 2.47 16 14 N -0.55 -19.80 4.80 -896.38 -4.31 -24.11 16 15 C 0.07 1.89 5.21 86.30 0.45 2.34 16 16 C 0.06 1.54 4.20 86.30 0.36 1.90 16 17 N -0.54 -11.58 4.73 -895.20 -4.23 -15.81 16 18 C 0.01 0.27 5.44 86.31 0.47 0.74 16 19 C 0.07 1.14 7.01 72.01 0.50 1.64 16 20 O -0.41 -8.15 10.83 -148.98 -1.61 -9.76 16 21 C 0.06 0.99 7.01 72.01 0.50 1.50 16 22 C 0.02 0.30 5.64 86.31 0.49 0.79 16 23 C 0.08 3.62 4.65 86.33 0.40 4.02 16 24 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 25 H 0.06 3.20 6.15 -2.39 -0.01 3.18 16 26 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 29 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 2.52 5.82 -2.39 -0.01 2.51 16 31 H 0.07 2.02 6.52 -2.39 -0.02 2.01 16 32 H 0.03 0.97 8.08 -2.39 -0.02 0.95 16 33 H 0.09 1.93 6.10 -2.39 -0.01 1.91 16 34 H 0.04 0.97 8.12 -2.39 -0.02 0.95 16 35 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.09 1.80 6.38 -2.39 -0.02 1.78 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 38 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.10 1.44 8.09 -2.39 -0.02 1.42 16 42 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.06 2.38 8.12 -2.39 -0.02 2.36 16 44 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -62.97 330.95 -2.36 -65.33 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.94 Total: 11.29 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 4.58 Total: -19.69 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -8.29 Total: -93.26 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -1.61 Total: -9.76 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -62.97 -2.36 -65.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259198920.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.778 kcal (2) G-P(sol) polarization free energy of solvation -62.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds