Wall clock time and date at job start Mon Mar 30 2020 00:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.49706 * 2 1 4 4 C 1.53040 * 109.49474 * 239.90586 * 2 1 3 5 5 C 1.53046 * 109.53813 * 178.68409 * 4 2 1 6 6 C 1.52760 * 109.38456 * 61.23638 * 5 4 2 7 7 N 1.46921 * 109.01022 * 305.59247 * 6 5 4 8 8 C 1.37477 * 120.63096 * 233.58010 * 7 6 5 9 9 N 1.37481 * 120.00296 * 354.00375 * 8 7 6 10 10 N 1.30348 * 120.00357 * 174.00023 * 8 7 6 11 11 C 1.46499 * 120.00205 * 173.25926 * 10 8 7 12 12 C 1.50701 * 109.46992 * 114.59159 * 11 10 8 13 13 O 1.21297 * 120.00131 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00267 * 179.97438 * 12 11 10 15 15 C 1.37090 * 120.00645 * 180.02562 * 14 12 11 16 16 H 1.08006 * 120.00153 * 359.97438 * 15 14 12 17 17 C 1.38953 * 120.00363 * 179.97438 * 15 14 12 18 18 N 1.31406 * 119.99918 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00068 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47056 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47026 * 300.00303 * 19 17 15 22 22 H 1.48499 * 109.46743 * 59.99867 * 19 17 15 23 23 C 1.46930 * 118.73871 * 53.30330 * 7 6 5 24 24 H 1.09006 * 109.47210 * 299.93184 * 1 2 3 25 25 H 1.08999 * 109.47205 * 59.93090 * 1 2 3 26 26 H 1.09004 * 109.47061 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46042 * 298.70313 * 4 2 1 28 28 H 1.09001 * 109.46104 * 58.66287 * 4 2 1 29 29 H 1.09000 * 109.49941 * 181.32069 * 5 4 2 30 30 H 1.09004 * 109.49733 * 301.38059 * 5 4 2 31 31 H 1.08999 * 109.50796 * 185.70765 * 6 5 4 32 32 H 1.08999 * 109.42825 * 65.42628 * 6 5 4 33 33 H 0.97006 * 119.99431 * 351.70538 * 9 8 7 34 34 H 0.96999 * 120.00919 * 171.70900 * 9 8 7 35 35 H 1.08994 * 109.47178 * 354.59501 * 11 10 8 36 36 H 1.09000 * 109.47097 * 234.59077 * 11 10 8 37 37 H 0.97001 * 119.99725 * 359.97438 * 14 12 11 38 38 H 0.97000 * 120.00474 * 180.02562 * 18 17 15 39 39 H 1.09006 * 109.58023 * 66.43287 * 23 7 6 40 40 H 1.08997 * 109.58666 * 186.85485 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7234 -1.2482 5 6 3.5708 -0.6954 -1.2659 6 6 4.1055 -1.4216 -0.0329 7 7 3.5047 -0.8289 1.1697 8 6 4.2968 -0.3762 2.1981 9 7 5.6550 -0.5866 2.1636 10 7 3.7602 0.2524 3.2060 11 6 4.5781 0.6043 4.3693 12 6 4.6812 2.1040 4.4758 13 8 4.1257 2.8095 3.6604 14 7 5.3899 2.6614 5.4776 15 6 5.4832 4.0256 5.5748 16 1 4.9893 4.6539 4.8483 17 6 6.2134 4.6003 6.6080 18 7 6.8140 3.8360 7.4922 19 14 6.3412 6.4592 6.7400 20 1 7.1688 6.8159 7.9203 21 1 6.9729 7.0005 5.5100 22 1 4.9829 7.0389 6.8950 23 6 2.0413 -0.7235 1.2497 24 1 -0.3634 0.5128 0.8906 25 1 -0.3633 0.5149 -0.8894 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6966 -1.7575 -1.2349 28 1 1.6580 -0.2250 -2.1389 29 1 3.9334 -1.1902 -2.1669 30 1 3.9159 0.3385 -1.2548 31 1 5.1895 -1.3159 0.0102 32 1 3.8412 -2.4774 -0.0910 33 1 6.0403 -1.1557 1.4790 34 1 6.2280 -0.1660 2.8236 35 1 5.5750 0.1789 4.2546 36 1 4.1152 0.2069 5.2726 37 1 5.8332 2.0972 6.1303 38 1 7.3235 4.2370 8.2137 39 1 1.6053 -1.7213 1.2983 40 1 1.7638 -0.1574 2.1389 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000262682496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:08 Heat of formation + Delta-G solvation = -3.288000 kcal Electronic energy + Delta-G solvation = -20663.606073 eV Core-core repulsion = 17513.626655 eV Total energy + Delta-G solvation = -3149.979418 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.52112 -38.01413 -36.60599 -33.82393 -33.21529 -32.09367 -31.38098 -30.97743 -27.35221 -26.65562 -24.98586 -23.87181 -22.03475 -20.42072 -19.30292 -18.61749 -17.80612 -17.70471 -16.55749 -15.64886 -15.03076 -14.81725 -14.49930 -14.39106 -14.24906 -13.93857 -13.79816 -13.50801 -12.89536 -12.65966 -12.55303 -12.04365 -11.95659 -11.70410 -11.54696 -11.41071 -11.16428 -10.95112 -10.75880 -10.70496 -10.37967 -10.36844 -10.11483 -9.38246 -8.69673 -8.64464 -8.27525 -7.83273 -7.23306 -6.30398 -3.70737 2.92524 3.26762 3.30677 3.31953 3.37833 4.05532 4.18664 4.28718 4.58404 4.72436 4.77614 4.95698 5.11787 5.24062 5.29791 5.37200 5.45887 5.51632 5.57307 5.64640 5.69994 5.79774 5.83758 5.91715 6.01361 6.06109 6.11940 6.25591 6.35453 6.41975 6.52243 6.92806 7.08540 7.34797 7.64876 8.16962 8.26635 8.75314 8.98858 9.31415 9.69669 10.23953 10.87511 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029835 B = 0.003827 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.262533 B = 7315.264723 C = 7689.716489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 H 0.077 0.923 4 C -0.111 4.111 5 C -0.137 4.137 6 C 0.127 3.873 7 N -0.611 5.611 8 C 0.617 3.383 9 N -0.899 5.899 10 N -0.622 5.622 11 C 0.069 3.931 12 C 0.443 3.557 13 O -0.577 6.577 14 N -0.572 5.572 15 C -0.296 4.296 16 H 0.100 0.900 17 C 0.020 3.980 18 N -0.906 5.906 19 Si 0.929 3.071 20 H -0.285 1.285 21 H -0.275 1.275 22 H -0.274 1.274 23 C 0.145 3.855 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.385 0.615 34 H 0.409 0.591 35 H 0.040 0.960 36 H 0.083 0.917 37 H 0.391 0.609 38 H 0.270 0.730 39 H 0.053 0.947 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.840 -14.313 -14.822 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.131 4.131 3 H 0.095 0.905 4 C -0.149 4.149 5 C -0.176 4.176 6 C 0.002 3.998 7 N -0.335 5.335 8 C 0.252 3.748 9 N -0.459 5.459 10 N -0.363 5.363 11 C -0.066 4.066 12 C 0.228 3.772 13 O -0.460 6.460 14 N -0.210 5.210 15 C -0.425 4.425 16 H 0.117 0.883 17 C -0.181 4.181 18 N -0.548 5.548 19 Si 0.756 3.244 20 H -0.210 1.210 21 H -0.201 1.201 22 H -0.200 1.200 23 C 0.021 3.979 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.214 0.786 34 H 0.243 0.757 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.224 0.776 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.014 -13.440 -14.931 20.970 hybrid contribution 1.783 0.430 0.464 1.892 sum -4.231 -13.010 -14.467 19.911 Atomic orbital electron populations 1.21740 0.94689 1.01592 1.02089 1.21556 0.95681 1.00741 0.95077 0.90463 1.21554 0.94942 1.00519 0.97894 1.21880 0.96589 1.01714 0.97426 1.21347 0.97548 0.96455 0.84401 1.45756 1.05180 1.66774 1.15829 1.18760 0.79294 0.88226 0.88498 1.43205 1.06101 1.58162 1.38464 1.72362 1.32986 1.27661 1.03267 1.21364 0.95450 0.94874 0.94872 1.20190 0.83635 0.89337 0.84079 1.90502 1.49277 1.63239 1.42978 1.41909 1.46025 1.07517 1.25517 1.19638 1.29586 0.82114 1.11207 0.88252 1.25213 0.96830 1.00246 0.95762 1.69604 1.34068 1.35753 1.15372 0.85951 0.78327 0.82598 0.77517 1.21039 1.20070 1.19975 1.21481 0.77639 0.99508 0.99229 0.92109 0.92700 0.92824 0.92049 0.92045 0.91107 0.91376 0.90914 0.92037 0.78631 0.75741 0.94181 0.89867 0.77630 0.92010 0.92905 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.20 37.16 0.34 -1.01 16 2 C -0.11 -1.24 2.87 -90.50 -0.26 -1.50 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.11 -0.99 5.17 -26.69 -0.14 -1.13 16 5 C -0.14 -1.22 6.06 -26.83 -0.16 -1.38 16 6 C 0.13 1.19 6.34 -3.94 -0.02 1.17 16 7 N -0.61 -8.08 3.05 -174.78 -0.53 -8.62 16 8 C 0.62 10.03 8.37 -320.09 -2.68 7.35 16 9 N -0.90 -11.80 8.59 30.14 0.26 -11.54 16 10 N -0.62 -12.45 8.63 -62.96 -0.54 -13.00 16 11 C 0.07 1.41 6.69 -5.19 -0.03 1.38 16 12 C 0.44 11.48 7.85 -10.99 -0.09 11.39 16 13 O -0.58 -17.31 16.01 5.54 0.09 -17.22 16 14 N -0.57 -15.39 5.29 -10.96 -0.06 -15.45 16 15 C -0.30 -8.67 9.68 -14.94 -0.14 -8.81 16 16 H 0.10 3.06 7.16 -52.48 -0.38 2.69 16 17 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 18 N -0.91 -25.50 13.05 55.50 0.72 -24.78 16 19 Si 0.93 21.86 29.55 -169.99 -5.02 16.84 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 C 0.14 1.85 5.75 -3.71 -0.02 1.83 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.60 5.87 -51.93 -0.30 0.30 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.38 3.76 6.65 -40.82 -0.27 3.49 16 34 H 0.41 5.66 6.42 -40.82 -0.26 5.40 16 35 H 0.04 0.71 5.60 -51.93 -0.29 0.42 16 36 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.39 10.00 7.90 -40.82 -0.32 9.68 16 38 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 1.66 6.91 -51.93 -0.36 1.30 16 LS Contribution 323.34 15.07 4.87 4.87 Total: -1.00 -34.83 323.34 -9.49 -44.32 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -5.97 Total: 14.81 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: -3.31 Total: 9.76 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -0.15 Total: -73.38 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: 0.09 Total: -17.22 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.83 -9.49 -44.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262682496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.033 kcal (2) G-P(sol) polarization free energy of solvation -34.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds