Wall clock time and date at job start Mon Mar 30 2020 00:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.49706 * 2 1 4 4 C 1.53040 * 109.49474 * 239.90586 * 2 1 3 5 5 C 1.53046 * 109.53813 * 178.68409 * 4 2 1 6 6 C 1.52760 * 109.38456 * 61.23638 * 5 4 2 7 7 N 1.46921 * 109.01022 * 305.59247 * 6 5 4 8 8 C 1.37477 * 120.63096 * 233.58010 * 7 6 5 9 9 N 1.37481 * 120.00296 * 354.00375 * 8 7 6 10 10 N 1.30348 * 120.00357 * 174.00023 * 8 7 6 11 11 C 1.46499 * 120.00205 * 173.25926 * 10 8 7 12 12 C 1.50701 * 109.46992 * 114.59159 * 11 10 8 13 13 O 1.21297 * 120.00131 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00267 * 179.97438 * 12 11 10 15 15 C 1.37090 * 120.00645 * 180.02562 * 14 12 11 16 16 H 1.08006 * 120.00153 * 359.97438 * 15 14 12 17 17 C 1.38953 * 120.00363 * 179.97438 * 15 14 12 18 18 N 1.31406 * 119.99918 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00068 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47056 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47026 * 300.00303 * 19 17 15 22 22 H 1.48499 * 109.46743 * 59.99867 * 19 17 15 23 23 C 1.46930 * 118.73871 * 53.30330 * 7 6 5 24 24 H 1.09006 * 109.47210 * 299.93184 * 1 2 3 25 25 H 1.08999 * 109.47205 * 59.93090 * 1 2 3 26 26 H 1.09004 * 109.47061 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46042 * 298.70313 * 4 2 1 28 28 H 1.09001 * 109.46104 * 58.66287 * 4 2 1 29 29 H 1.09000 * 109.49941 * 181.32069 * 5 4 2 30 30 H 1.09004 * 109.49733 * 301.38059 * 5 4 2 31 31 H 1.08999 * 109.50796 * 185.70765 * 6 5 4 32 32 H 1.08999 * 109.42825 * 65.42628 * 6 5 4 33 33 H 0.97006 * 119.99431 * 351.70538 * 9 8 7 34 34 H 0.96999 * 120.00919 * 171.70900 * 9 8 7 35 35 H 1.08994 * 109.47178 * 354.59501 * 11 10 8 36 36 H 1.09000 * 109.47097 * 234.59077 * 11 10 8 37 37 H 0.97001 * 119.99725 * 359.97438 * 14 12 11 38 38 H 0.97000 * 120.00474 * 180.02562 * 18 17 15 39 39 H 1.09006 * 109.58023 * 66.43287 * 23 7 6 40 40 H 1.08997 * 109.58666 * 186.85485 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7234 -1.2482 5 6 3.5708 -0.6954 -1.2659 6 6 4.1055 -1.4216 -0.0329 7 7 3.5047 -0.8289 1.1697 8 6 4.2968 -0.3762 2.1981 9 7 5.6550 -0.5866 2.1636 10 7 3.7602 0.2524 3.2060 11 6 4.5781 0.6043 4.3693 12 6 4.6812 2.1040 4.4758 13 8 4.1257 2.8095 3.6604 14 7 5.3899 2.6614 5.4776 15 6 5.4832 4.0256 5.5748 16 1 4.9893 4.6539 4.8483 17 6 6.2134 4.6003 6.6080 18 7 6.8140 3.8360 7.4922 19 14 6.3412 6.4592 6.7400 20 1 7.1688 6.8159 7.9203 21 1 6.9729 7.0005 5.5100 22 1 4.9829 7.0389 6.8950 23 6 2.0413 -0.7235 1.2497 24 1 -0.3634 0.5128 0.8906 25 1 -0.3633 0.5149 -0.8894 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6966 -1.7575 -1.2349 28 1 1.6580 -0.2250 -2.1389 29 1 3.9334 -1.1902 -2.1669 30 1 3.9159 0.3385 -1.2548 31 1 5.1895 -1.3159 0.0102 32 1 3.8412 -2.4774 -0.0910 33 1 6.0403 -1.1557 1.4790 34 1 6.2280 -0.1660 2.8236 35 1 5.5750 0.1789 4.2546 36 1 4.1152 0.2069 5.2726 37 1 5.8332 2.0972 6.1303 38 1 7.3235 4.2370 8.2137 39 1 1.6053 -1.7213 1.2983 40 1 1.7638 -0.1574 2.1389 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000262682496.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:08 Heat of formation + Delta-G solvation = -27.420029 kcal Electronic energy + Delta-G solvation = -20664.652516 eV Core-core repulsion = 17513.626655 eV Total energy + Delta-G solvation = -3151.025861 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.62119 -39.89264 -37.82935 -35.93769 -34.32355 -33.26179 -33.04885 -32.47373 -28.88179 -27.53471 -26.63846 -25.26740 -22.92950 -21.59391 -20.86314 -20.05595 -19.68514 -18.94886 -17.86603 -17.51077 -16.52866 -15.95659 -15.93800 -15.69118 -15.55134 -15.29690 -15.16984 -14.70002 -14.38499 -13.93356 -13.55330 -13.44237 -13.31398 -13.10233 -12.90319 -12.80657 -12.58622 -12.44272 -12.12799 -11.94459 -11.63653 -11.51148 -11.48351 -11.23456 -10.41889 -10.02941 -9.95557 -9.70466 -8.60286 -8.42783 -5.95052 1.38572 1.39392 1.50951 1.81842 2.02809 2.09046 2.32103 3.06111 3.19954 3.42216 3.79978 3.92908 3.97810 4.13069 4.24754 4.36539 4.46636 4.55481 4.59154 4.60761 4.70149 4.80382 4.90864 4.94232 4.96795 5.06349 5.12031 5.24408 5.32971 5.39526 5.40352 5.56099 5.93085 5.95875 6.01229 6.19385 6.62001 7.12527 7.18329 7.56137 7.72764 8.16321 8.71438 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.029835 B = 0.003827 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.262533 B = 7315.264723 C = 7689.716489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 H 0.038 0.962 4 C -0.106 4.106 5 C -0.135 4.135 6 C 0.119 3.881 7 N -0.611 5.611 8 C 0.619 3.381 9 N -0.886 5.886 10 N -0.675 5.675 11 C 0.085 3.915 12 C 0.436 3.564 13 O -0.625 6.625 14 N -0.575 5.575 15 C -0.336 4.336 16 H 0.073 0.927 17 C -0.012 4.012 18 N -0.920 5.920 19 Si 0.993 3.007 20 H -0.266 1.266 21 H -0.272 1.272 22 H -0.274 1.274 23 C 0.142 3.858 24 H 0.043 0.957 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.404 0.596 34 H 0.407 0.593 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.396 0.604 38 H 0.278 0.722 39 H 0.078 0.922 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.260 -15.884 -16.039 22.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.128 4.128 3 H 0.056 0.944 4 C -0.144 4.144 5 C -0.173 4.173 6 C -0.003 4.003 7 N -0.334 5.334 8 C 0.255 3.745 9 N -0.447 5.447 10 N -0.419 5.419 11 C -0.050 4.050 12 C 0.223 3.777 13 O -0.511 6.511 14 N -0.213 5.213 15 C -0.466 4.466 16 H 0.091 0.909 17 C -0.211 4.211 18 N -0.561 5.561 19 Si 0.817 3.183 20 H -0.191 1.191 21 H -0.197 1.197 22 H -0.199 1.199 23 C 0.019 3.981 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.120 0.880 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.236 0.764 34 H 0.240 0.760 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.230 0.770 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.399 -15.079 -16.189 22.773 hybrid contribution 1.607 0.851 0.773 1.976 sum -3.792 -14.229 -15.416 21.319 Atomic orbital electron populations 1.21714 0.93390 1.02805 1.01784 1.21495 0.96795 0.98670 0.95820 0.94356 1.21540 0.94902 1.01370 0.96565 1.21882 0.96605 1.00430 0.98420 1.21702 0.98172 0.97684 0.82766 1.46096 1.05297 1.65936 1.16066 1.19019 0.80483 0.86737 0.88281 1.43070 1.04950 1.57898 1.38743 1.72386 1.33719 1.31208 1.04627 1.21151 0.97328 0.90403 0.96131 1.21281 0.81951 0.91763 0.82676 1.90454 1.50984 1.65122 1.44587 1.41961 1.46327 1.06985 1.26004 1.19603 1.31587 0.83258 1.12144 0.90919 1.26030 0.95553 1.04886 0.94672 1.69664 1.33547 1.37574 1.15351 0.84995 0.78453 0.76787 0.78100 1.19053 1.19709 1.19905 1.21495 0.77809 1.00338 0.98447 0.93754 0.91723 0.90771 0.89882 0.91161 0.88015 0.94040 0.89785 0.89205 0.76430 0.76041 0.91430 0.89149 0.77036 0.91237 0.90442 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.20 71.98 0.66 -1.87 16 2 C -0.11 -2.38 2.87 -10.72 -0.03 -2.41 16 3 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 4 C -0.11 -1.62 5.17 30.62 0.16 -1.46 16 5 C -0.13 -2.05 6.06 30.53 0.19 -1.86 16 6 C 0.12 1.90 6.34 86.22 0.55 2.45 16 7 N -0.61 -15.51 3.05 -706.88 -2.16 -17.67 16 8 C 0.62 19.93 8.37 260.54 2.18 22.11 16 9 N -0.89 -22.07 8.59 -58.57 -0.50 -22.57 16 10 N -0.68 -27.66 8.63 -353.11 -3.05 -30.71 16 11 C 0.08 3.53 6.69 85.63 0.57 4.10 16 12 C 0.44 23.48 7.85 87.66 0.69 24.17 16 13 O -0.63 -39.41 16.01 -3.08 -0.05 -39.46 16 14 N -0.57 -31.92 5.29 -306.98 -1.62 -33.55 16 15 C -0.34 -20.33 9.68 84.04 0.81 -19.52 16 16 H 0.07 4.71 7.16 -2.91 -0.02 4.69 16 17 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 18 N -0.92 -51.44 13.05 21.66 0.28 -51.16 16 19 Si 0.99 44.71 29.55 68.60 2.03 46.74 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 23 C 0.14 3.60 5.75 86.36 0.50 4.10 16 24 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.08 1.14 5.87 -2.39 -0.01 1.12 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.40 6.93 6.65 -92.70 -0.62 6.32 16 34 H 0.41 10.82 6.42 -92.71 -0.59 10.22 16 35 H 0.07 2.36 5.60 -2.39 -0.01 2.35 16 36 H 0.09 3.54 8.14 -2.39 -0.02 3.53 16 37 H 0.40 20.70 7.90 -92.71 -0.73 19.97 16 38 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 39 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.07 2.23 6.91 -2.39 -0.02 2.21 16 Total: -1.00 -78.46 323.34 0.80 -77.66 By element: Atomic # 1 Polarization: 41.97 SS G_CDS: -0.87 Total: 41.10 kcal Atomic # 6 Polarization: 22.88 SS G_CDS: 6.74 Total: 29.62 kcal Atomic # 7 Polarization: -148.62 SS G_CDS: -7.05 Total: -155.66 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -0.05 Total: -39.46 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -78.46 0.80 -77.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262682496.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.243 kcal (2) G-P(sol) polarization free energy of solvation -78.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds