Wall clock time and date at job start Mon Mar 30 2020 00:31:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08997 * 109.49706 * 2 1
4 4 C 1.53040 * 109.49474 * 239.90586 * 2 1 3
5 5 C 1.53046 * 109.53813 * 178.68409 * 4 2 1
6 6 C 1.52760 * 109.38456 * 61.23638 * 5 4 2
7 7 N 1.46921 * 109.01022 * 305.59247 * 6 5 4
8 8 C 1.37477 * 120.63096 * 233.58010 * 7 6 5
9 9 N 1.37481 * 120.00296 * 354.00375 * 8 7 6
10 10 N 1.30348 * 120.00357 * 174.00023 * 8 7 6
11 11 C 1.46499 * 120.00205 * 173.25926 * 10 8 7
12 12 C 1.50701 * 109.46992 * 114.59159 * 11 10 8
13 13 O 1.21297 * 120.00131 * 0.02562 * 12 11 10
14 14 N 1.34775 * 120.00267 * 179.97438 * 12 11 10
15 15 C 1.37090 * 120.00645 * 180.02562 * 14 12 11
16 16 H 1.08006 * 120.00153 * 359.97438 * 15 14 12
17 17 C 1.38953 * 120.00363 * 179.97438 * 15 14 12
18 18 N 1.31406 * 119.99918 * 359.97438 * 17 15 14
19 19 Si 1.86803 * 120.00068 * 179.97438 * 17 15 14
20 20 H 1.48495 * 109.47056 * 179.97438 * 19 17 15
21 21 H 1.48494 * 109.47026 * 300.00303 * 19 17 15
22 22 H 1.48499 * 109.46743 * 59.99867 * 19 17 15
23 23 C 1.46930 * 118.73871 * 53.30330 * 7 6 5
24 24 H 1.09006 * 109.47210 * 299.93184 * 1 2 3
25 25 H 1.08999 * 109.47205 * 59.93090 * 1 2 3
26 26 H 1.09004 * 109.47061 * 179.97438 * 1 2 3
27 27 H 1.08999 * 109.46042 * 298.70313 * 4 2 1
28 28 H 1.09001 * 109.46104 * 58.66287 * 4 2 1
29 29 H 1.09000 * 109.49941 * 181.32069 * 5 4 2
30 30 H 1.09004 * 109.49733 * 301.38059 * 5 4 2
31 31 H 1.08999 * 109.50796 * 185.70765 * 6 5 4
32 32 H 1.08999 * 109.42825 * 65.42628 * 6 5 4
33 33 H 0.97006 * 119.99431 * 351.70538 * 9 8 7
34 34 H 0.96999 * 120.00919 * 171.70900 * 9 8 7
35 35 H 1.08994 * 109.47178 * 354.59501 * 11 10 8
36 36 H 1.09000 * 109.47097 * 234.59077 * 11 10 8
37 37 H 0.97001 * 119.99725 * 359.97438 * 14 12 11
38 38 H 0.97000 * 120.00474 * 180.02562 * 18 17 15
39 39 H 1.09006 * 109.58023 * 66.43287 * 23 7 6
40 40 H 1.08997 * 109.58666 * 186.85485 * 23 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8938 1.0275 0.0000
4 6 2.0407 -0.7234 -1.2482
5 6 3.5708 -0.6954 -1.2659
6 6 4.1055 -1.4216 -0.0329
7 7 3.5047 -0.8289 1.1697
8 6 4.2968 -0.3762 2.1981
9 7 5.6550 -0.5866 2.1636
10 7 3.7602 0.2524 3.2060
11 6 4.5781 0.6043 4.3693
12 6 4.6812 2.1040 4.4758
13 8 4.1257 2.8095 3.6604
14 7 5.3899 2.6614 5.4776
15 6 5.4832 4.0256 5.5748
16 1 4.9893 4.6539 4.8483
17 6 6.2134 4.6003 6.6080
18 7 6.8140 3.8360 7.4922
19 14 6.3412 6.4592 6.7400
20 1 7.1688 6.8159 7.9203
21 1 6.9729 7.0005 5.5100
22 1 4.9829 7.0389 6.8950
23 6 2.0413 -0.7235 1.2497
24 1 -0.3634 0.5128 0.8906
25 1 -0.3633 0.5149 -0.8894
26 1 -0.3633 -1.0277 -0.0005
27 1 1.6966 -1.7575 -1.2349
28 1 1.6580 -0.2250 -2.1389
29 1 3.9334 -1.1902 -2.1669
30 1 3.9159 0.3385 -1.2548
31 1 5.1895 -1.3159 0.0102
32 1 3.8412 -2.4774 -0.0910
33 1 6.0403 -1.1557 1.4790
34 1 6.2280 -0.1660 2.8236
35 1 5.5750 0.1789 4.2546
36 1 4.1152 0.2069 5.2726
37 1 5.8332 2.0972 6.1303
38 1 7.3235 4.2370 8.2137
39 1 1.6053 -1.7213 1.2983
40 1 1.7638 -0.1574 2.1389
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000262682496.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:31:08
Heat of formation + Delta-G solvation = -27.420029 kcal
Electronic energy + Delta-G solvation = -20664.652516 eV
Core-core repulsion = 17513.626655 eV
Total energy + Delta-G solvation = -3151.025861 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 268.164 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-40.62119 -39.89264 -37.82935 -35.93769 -34.32355 -33.26179 -33.04885 -32.47373
-28.88179 -27.53471 -26.63846 -25.26740 -22.92950 -21.59391 -20.86314 -20.05595
-19.68514 -18.94886 -17.86603 -17.51077 -16.52866 -15.95659 -15.93800 -15.69118
-15.55134 -15.29690 -15.16984 -14.70002 -14.38499 -13.93356 -13.55330 -13.44237
-13.31398 -13.10233 -12.90319 -12.80657 -12.58622 -12.44272 -12.12799 -11.94459
-11.63653 -11.51148 -11.48351 -11.23456 -10.41889 -10.02941 -9.95557 -9.70466
-8.60286 -8.42783 -5.95052 1.38572 1.39392 1.50951 1.81842 2.02809
2.09046 2.32103 3.06111 3.19954 3.42216 3.79978 3.92908 3.97810
4.13069 4.24754 4.36539 4.46636 4.55481 4.59154 4.60761 4.70149
4.80382 4.90864 4.94232 4.96795 5.06349 5.12031 5.24408 5.32971
5.39526 5.40352 5.56099 5.93085 5.95875 6.01229 6.19385 6.62001
7.12527 7.18329 7.56137 7.72764 8.16321 8.71438
Molecular weight = 268.16amu
Principal moments of inertia in cm(-1)
A = 0.029835 B = 0.003827 C = 0.003640
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 938.262533 B = 7315.264723 C = 7689.716489
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.108 4.108
3 H 0.038 0.962
4 C -0.106 4.106
5 C -0.135 4.135
6 C 0.119 3.881
7 N -0.611 5.611
8 C 0.619 3.381
9 N -0.886 5.886
10 N -0.675 5.675
11 C 0.085 3.915
12 C 0.436 3.564
13 O -0.625 6.625
14 N -0.575 5.575
15 C -0.336 4.336
16 H 0.073 0.927
17 C -0.012 4.012
18 N -0.920 5.920
19 Si 0.993 3.007
20 H -0.266 1.266
21 H -0.272 1.272
22 H -0.274 1.274
23 C 0.142 3.858
24 H 0.043 0.957
25 H 0.064 0.936
26 H 0.073 0.927
27 H 0.083 0.917
28 H 0.070 0.930
29 H 0.102 0.898
30 H 0.041 0.959
31 H 0.084 0.916
32 H 0.090 0.910
33 H 0.404 0.596
34 H 0.407 0.593
35 H 0.068 0.932
36 H 0.091 0.909
37 H 0.396 0.604
38 H 0.278 0.722
39 H 0.078 0.922
40 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.260 -15.884 -16.039 22.972
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.128 4.128
3 H 0.056 0.944
4 C -0.144 4.144
5 C -0.173 4.173
6 C -0.003 4.003
7 N -0.334 5.334
8 C 0.255 3.745
9 N -0.447 5.447
10 N -0.419 5.419
11 C -0.050 4.050
12 C 0.223 3.777
13 O -0.511 6.511
14 N -0.213 5.213
15 C -0.466 4.466
16 H 0.091 0.909
17 C -0.211 4.211
18 N -0.561 5.561
19 Si 0.817 3.183
20 H -0.191 1.191
21 H -0.197 1.197
22 H -0.199 1.199
23 C 0.019 3.981
24 H 0.062 0.938
25 H 0.083 0.917
26 H 0.092 0.908
27 H 0.101 0.899
28 H 0.088 0.912
29 H 0.120 0.880
30 H 0.060 0.940
31 H 0.102 0.898
32 H 0.108 0.892
33 H 0.236 0.764
34 H 0.240 0.760
35 H 0.086 0.914
36 H 0.109 0.891
37 H 0.230 0.770
38 H 0.088 0.912
39 H 0.096 0.904
40 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -5.399 -15.079 -16.189 22.773
hybrid contribution 1.607 0.851 0.773 1.976
sum -3.792 -14.229 -15.416 21.319
Atomic orbital electron populations
1.21714 0.93390 1.02805 1.01784 1.21495 0.96795 0.98670 0.95820
0.94356 1.21540 0.94902 1.01370 0.96565 1.21882 0.96605 1.00430
0.98420 1.21702 0.98172 0.97684 0.82766 1.46096 1.05297 1.65936
1.16066 1.19019 0.80483 0.86737 0.88281 1.43070 1.04950 1.57898
1.38743 1.72386 1.33719 1.31208 1.04627 1.21151 0.97328 0.90403
0.96131 1.21281 0.81951 0.91763 0.82676 1.90454 1.50984 1.65122
1.44587 1.41961 1.46327 1.06985 1.26004 1.19603 1.31587 0.83258
1.12144 0.90919 1.26030 0.95553 1.04886 0.94672 1.69664 1.33547
1.37574 1.15351 0.84995 0.78453 0.76787 0.78100 1.19053 1.19709
1.19905 1.21495 0.77809 1.00338 0.98447 0.93754 0.91723 0.90771
0.89882 0.91161 0.88015 0.94040 0.89785 0.89205 0.76430 0.76041
0.91430 0.89149 0.77036 0.91237 0.90442 0.91525
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.53 9.20 71.98 0.66 -1.87 16
2 C -0.11 -2.38 2.87 -10.72 -0.03 -2.41 16
3 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16
4 C -0.11 -1.62 5.17 30.62 0.16 -1.46 16
5 C -0.13 -2.05 6.06 30.53 0.19 -1.86 16
6 C 0.12 1.90 6.34 86.22 0.55 2.45 16
7 N -0.61 -15.51 3.05 -706.88 -2.16 -17.67 16
8 C 0.62 19.93 8.37 260.54 2.18 22.11 16
9 N -0.89 -22.07 8.59 -58.57 -0.50 -22.57 16
10 N -0.68 -27.66 8.63 -353.11 -3.05 -30.71 16
11 C 0.08 3.53 6.69 85.63 0.57 4.10 16
12 C 0.44 23.48 7.85 87.66 0.69 24.17 16
13 O -0.63 -39.41 16.01 -3.08 -0.05 -39.46 16
14 N -0.57 -31.92 5.29 -306.98 -1.62 -33.55 16
15 C -0.34 -20.33 9.68 84.04 0.81 -19.52 16
16 H 0.07 4.71 7.16 -2.91 -0.02 4.69 16
17 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16
18 N -0.92 -51.44 13.05 21.66 0.28 -51.16 16
19 Si 0.99 44.71 29.55 68.60 2.03 46.74 16
20 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16
21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16
22 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16
23 C 0.14 3.60 5.75 86.36 0.50 4.10 16
24 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16
25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
26 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16
27 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16
28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16
29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16
30 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16
31 H 0.08 1.14 5.87 -2.39 -0.01 1.12 16
32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16
33 H 0.40 6.93 6.65 -92.70 -0.62 6.32 16
34 H 0.41 10.82 6.42 -92.71 -0.59 10.22 16
35 H 0.07 2.36 5.60 -2.39 -0.01 2.35 16
36 H 0.09 3.54 8.14 -2.39 -0.02 3.53 16
37 H 0.40 20.70 7.90 -92.71 -0.73 19.97 16
38 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16
39 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16
40 H 0.07 2.23 6.91 -2.39 -0.02 2.21 16
Total: -1.00 -78.46 323.34 0.80 -77.66
By element:
Atomic # 1 Polarization: 41.97 SS G_CDS: -0.87 Total: 41.10 kcal
Atomic # 6 Polarization: 22.88 SS G_CDS: 6.74 Total: 29.62 kcal
Atomic # 7 Polarization: -148.62 SS G_CDS: -7.05 Total: -155.66 kcal
Atomic # 8 Polarization: -39.41 SS G_CDS: -0.05 Total: -39.46 kcal
Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal
Total: -78.46 0.80 -77.66 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000262682496.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.243 kcal
(2) G-P(sol) polarization free energy of solvation -78.461 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.218 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.663 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.420 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds