Wall clock time and date at job start Mon Mar 30 2020 00:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.49535 * 2 1 4 4 C 1.53036 * 109.50102 * 120.06541 * 2 1 3 5 5 C 1.53043 * 109.53976 * 181.35041 * 4 2 1 6 6 C 1.53197 * 109.30967 * 298.63896 * 5 4 2 7 7 N 1.46923 * 108.77806 * 54.63599 * 6 5 4 8 8 C 1.37478 * 120.63523 * 126.41079 * 7 6 5 9 9 N 1.37477 * 120.00665 * 174.20651 * 8 7 6 10 10 N 1.30347 * 119.99585 * 354.20642 * 8 7 6 11 11 C 1.46501 * 119.99703 * 173.47144 * 10 8 7 12 12 C 1.50695 * 109.47006 * 114.47316 * 11 10 8 13 13 O 1.21289 * 120.00304 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99957 * 179.97438 * 12 11 10 15 15 C 1.37096 * 119.99831 * 179.97438 * 14 12 11 16 16 H 1.08005 * 120.00040 * 0.02562 * 15 14 12 17 17 C 1.38949 * 120.00109 * 180.02562 * 15 14 12 18 18 N 1.31417 * 119.99852 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00392 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47177 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47582 * 120.00090 * 19 17 15 22 22 H 1.48500 * 109.47321 * 240.00381 * 19 17 15 23 23 C 1.46931 * 118.73508 * 306.39007 * 7 6 5 24 24 H 1.09010 * 109.46928 * 299.99566 * 1 2 3 25 25 H 1.08997 * 109.47224 * 59.99373 * 1 2 3 26 26 H 1.09003 * 109.46985 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46172 * 301.37558 * 4 2 1 28 28 H 1.08999 * 109.45776 * 61.34207 * 4 2 1 29 29 H 1.08994 * 109.49513 * 58.59009 * 5 4 2 30 30 H 1.08994 * 109.49736 * 178.65499 * 5 4 2 31 31 H 1.08997 * 109.58454 * 174.42103 * 6 5 4 32 32 H 1.08999 * 109.58625 * 294.70324 * 6 5 4 33 33 H 0.96999 * 120.00721 * 165.83373 * 9 8 7 34 34 H 0.97005 * 119.99665 * 345.83867 * 9 8 7 35 35 H 1.09003 * 109.47292 * 234.47358 * 11 10 8 36 36 H 1.09004 * 109.47405 * 354.47119 * 11 10 8 37 37 H 0.96994 * 120.00248 * 0.02562 * 14 12 11 38 38 H 0.97000 * 119.99520 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.58592 * 293.82098 * 23 7 6 40 40 H 1.09007 * 109.58408 * 173.39636 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0409 -0.7227 1.2485 5 6 3.5709 -0.6939 1.2665 6 6 4.1060 -1.4253 0.0314 7 7 3.5053 -0.8281 -1.1691 8 6 4.2974 -0.3761 -2.1979 9 7 3.7216 0.0704 -3.3637 10 7 5.5943 -0.3709 -2.0679 11 6 6.4436 -0.0259 -3.2108 12 6 7.1743 1.2603 -2.9234 13 8 7.0030 1.8323 -1.8677 14 7 8.0190 1.7745 -3.8391 15 6 8.6834 2.9449 -3.5778 16 1 8.5302 3.4547 -2.6381 17 6 9.5539 3.4754 -4.5221 18 7 9.7399 2.8554 -5.6658 19 14 10.4597 5.0698 -4.1659 20 1 10.0785 5.5654 -2.8190 21 1 11.9241 4.8273 -4.2084 22 1 10.0961 6.0845 -5.1873 23 6 2.0420 -0.7235 -1.2494 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6577 -0.2243 2.1389 28 1 1.6975 -1.7571 1.2353 29 1 3.9154 0.3401 1.2547 30 1 3.9335 -1.1878 2.1679 31 1 5.1902 -1.3227 -0.0129 32 1 3.8409 -2.4811 0.0885 33 1 4.2488 0.5748 -4.0029 34 1 2.7880 -0.1189 -3.5471 35 1 7.1661 -0.8242 -3.3806 36 1 5.8244 0.0987 -4.0992 37 1 8.1564 1.3170 -4.6832 38 1 10.3473 3.2260 -6.3250 39 1 1.6064 -1.7215 -1.2979 40 1 1.7643 -0.1578 -2.1389 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000262682497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:11 Heat of formation + Delta-G solvation = -4.133536 kcal Electronic energy + Delta-G solvation = -20619.451502 eV Core-core repulsion = 17469.435419 eV Total energy + Delta-G solvation = -3150.016083 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.52835 -38.02399 -36.59830 -33.80441 -33.26611 -32.25727 -31.12492 -30.96667 -27.68278 -26.52163 -24.97904 -23.69494 -22.26736 -20.41269 -19.30960 -18.58157 -17.76227 -17.69219 -16.55771 -15.68760 -15.25298 -14.64439 -14.50065 -14.37532 -14.22144 -14.07855 -13.80608 -13.46435 -12.91645 -12.69718 -12.50438 -12.28435 -11.95038 -11.70732 -11.57279 -11.40710 -11.12241 -10.99438 -10.86618 -10.55708 -10.52578 -10.27789 -10.12875 -9.40563 -8.70785 -8.64480 -8.27846 -7.83565 -7.23887 -6.30940 -3.71195 2.92762 3.22579 3.30449 3.32810 3.40752 4.05984 4.18745 4.28474 4.50755 4.65417 4.75571 5.05212 5.08588 5.25461 5.30424 5.34941 5.37541 5.40541 5.49503 5.64155 5.66681 5.70152 5.87847 5.89932 5.96527 6.03299 6.08341 6.24574 6.35032 6.37387 6.51910 6.93198 7.10877 7.35297 7.64978 8.17047 8.26408 8.74799 8.98310 9.31173 9.69323 10.23393 10.87075 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033267 B = 0.003640 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.460320 B = 7690.020249 C = 7830.506529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 H 0.075 0.925 4 C -0.111 4.111 5 C -0.138 4.138 6 C 0.139 3.861 7 N -0.611 5.611 8 C 0.616 3.384 9 N -0.900 5.900 10 N -0.620 5.620 11 C 0.068 3.932 12 C 0.443 3.557 13 O -0.577 6.577 14 N -0.572 5.572 15 C -0.294 4.294 16 H 0.101 0.899 17 C 0.019 3.981 18 N -0.905 5.905 19 Si 0.927 3.073 20 H -0.269 1.269 21 H -0.282 1.282 22 H -0.283 1.283 23 C 0.132 3.868 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.052 0.948 33 H 0.409 0.591 34 H 0.385 0.615 35 H 0.083 0.917 36 H 0.042 0.958 37 H 0.391 0.609 38 H 0.269 0.731 39 H 0.061 0.939 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.266 -9.787 6.532 21.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 H 0.094 0.906 4 C -0.149 4.149 5 C -0.176 4.176 6 C 0.015 3.985 7 N -0.335 5.335 8 C 0.252 3.748 9 N -0.460 5.460 10 N -0.360 5.360 11 C -0.067 4.067 12 C 0.228 3.772 13 O -0.460 6.460 14 N -0.210 5.210 15 C -0.424 4.424 16 H 0.119 0.881 17 C -0.182 4.182 18 N -0.548 5.548 19 Si 0.755 3.245 20 H -0.193 1.193 21 H -0.208 1.208 22 H -0.209 1.209 23 C 0.008 3.992 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.123 0.877 32 H 0.071 0.929 33 H 0.242 0.758 34 H 0.214 0.786 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.224 0.776 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.563 -9.551 7.825 21.469 hybrid contribution 0.012 1.018 -1.588 1.886 sum -17.551 -8.533 6.237 20.488 Atomic orbital electron populations 1.21776 0.94719 1.01808 1.01943 1.21551 0.95412 1.00572 0.95464 0.90607 1.21554 0.95933 1.00253 0.97155 1.21962 0.95274 1.02264 0.98147 1.21407 1.00506 0.94508 0.82031 1.45780 1.03529 1.66974 1.17252 1.18769 0.87639 0.87997 0.80407 1.43159 1.15297 1.65433 1.22139 1.72352 0.99060 1.36640 1.27998 1.21375 0.96440 0.96931 0.91913 1.20197 0.83889 0.87387 0.85762 1.90502 1.67078 1.62615 1.25800 1.41926 1.38980 1.22944 1.17172 1.19739 1.20156 0.99239 1.03260 0.88133 1.25223 0.98030 0.99670 0.95231 1.69628 1.37918 1.40072 1.07141 0.85831 0.78919 0.81260 0.78513 1.19333 1.20813 1.20891 1.21499 0.79998 0.99771 0.97951 0.92408 0.92598 0.92594 0.92061 0.92067 0.91180 0.91059 0.87727 0.92936 0.75765 0.78632 0.89853 0.94039 0.77628 0.92123 0.92057 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.20 37.16 0.34 -0.65 16 2 C -0.11 -1.00 2.87 -90.50 -0.26 -1.26 16 3 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 4 C -0.11 -0.99 5.17 -26.69 -0.14 -1.12 16 5 C -0.14 -1.51 6.08 -26.61 -0.16 -1.68 16 6 C 0.14 1.76 6.46 -3.71 -0.02 1.73 16 7 N -0.61 -8.07 3.05 -174.51 -0.53 -8.61 16 8 C 0.62 10.01 8.38 -320.10 -2.68 7.33 16 9 N -0.90 -11.80 8.41 30.14 0.25 -11.54 16 10 N -0.62 -12.39 8.63 -62.96 -0.54 -12.93 16 11 C 0.07 1.39 6.67 -5.20 -0.03 1.36 16 12 C 0.44 11.46 7.85 -10.99 -0.09 11.37 16 13 O -0.58 -17.29 16.01 5.55 0.09 -17.21 16 14 N -0.57 -15.38 5.29 -10.96 -0.06 -15.44 16 15 C -0.29 -8.61 9.68 -14.93 -0.14 -8.76 16 16 H 0.10 3.11 7.16 -52.48 -0.38 2.73 16 17 C 0.02 0.53 5.50 -17.47 -0.10 0.44 16 18 N -0.91 -25.48 13.05 55.50 0.72 -24.76 16 19 Si 0.93 21.84 29.55 -169.99 -5.02 16.82 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.13 1.27 5.63 -3.71 -0.02 1.25 16 24 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 1.64 6.91 -51.93 -0.36 1.28 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.41 5.69 6.59 -40.82 -0.27 5.42 16 34 H 0.39 3.76 6.81 -40.82 -0.28 3.48 16 35 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.04 0.73 5.69 -51.93 -0.30 0.44 16 37 H 0.39 9.99 7.90 -40.82 -0.32 9.67 16 38 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.63 5.95 -51.93 -0.31 0.32 16 LS Contribution 323.66 15.07 4.88 4.88 Total: -1.00 -34.77 323.66 -9.51 -44.28 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -5.99 Total: 14.51 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: -3.30 Total: 10.00 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -0.16 Total: -73.28 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.09 Total: -17.21 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.77 -9.51 -44.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262682497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.143 kcal (2) G-P(sol) polarization free energy of solvation -34.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds