Wall clock time and date at job start Mon Mar 30 2020 00:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.49535 * 2 1 4 4 C 1.53036 * 109.50102 * 120.06541 * 2 1 3 5 5 C 1.53043 * 109.53976 * 181.35041 * 4 2 1 6 6 C 1.53197 * 109.30967 * 298.63896 * 5 4 2 7 7 N 1.46923 * 108.77806 * 54.63599 * 6 5 4 8 8 C 1.37478 * 120.63523 * 126.41079 * 7 6 5 9 9 N 1.37477 * 120.00665 * 174.20651 * 8 7 6 10 10 N 1.30347 * 119.99585 * 354.20642 * 8 7 6 11 11 C 1.46501 * 119.99703 * 173.47144 * 10 8 7 12 12 C 1.50695 * 109.47006 * 114.47316 * 11 10 8 13 13 O 1.21289 * 120.00304 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99957 * 179.97438 * 12 11 10 15 15 C 1.37096 * 119.99831 * 179.97438 * 14 12 11 16 16 H 1.08005 * 120.00040 * 0.02562 * 15 14 12 17 17 C 1.38949 * 120.00109 * 180.02562 * 15 14 12 18 18 N 1.31417 * 119.99852 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00392 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47177 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47582 * 120.00090 * 19 17 15 22 22 H 1.48500 * 109.47321 * 240.00381 * 19 17 15 23 23 C 1.46931 * 118.73508 * 306.39007 * 7 6 5 24 24 H 1.09010 * 109.46928 * 299.99566 * 1 2 3 25 25 H 1.08997 * 109.47224 * 59.99373 * 1 2 3 26 26 H 1.09003 * 109.46985 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46172 * 301.37558 * 4 2 1 28 28 H 1.08999 * 109.45776 * 61.34207 * 4 2 1 29 29 H 1.08994 * 109.49513 * 58.59009 * 5 4 2 30 30 H 1.08994 * 109.49736 * 178.65499 * 5 4 2 31 31 H 1.08997 * 109.58454 * 174.42103 * 6 5 4 32 32 H 1.08999 * 109.58625 * 294.70324 * 6 5 4 33 33 H 0.96999 * 120.00721 * 165.83373 * 9 8 7 34 34 H 0.97005 * 119.99665 * 345.83867 * 9 8 7 35 35 H 1.09003 * 109.47292 * 234.47358 * 11 10 8 36 36 H 1.09004 * 109.47405 * 354.47119 * 11 10 8 37 37 H 0.96994 * 120.00248 * 0.02562 * 14 12 11 38 38 H 0.97000 * 119.99520 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.58592 * 293.82098 * 23 7 6 40 40 H 1.09007 * 109.58408 * 173.39636 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0409 -0.7227 1.2485 5 6 3.5709 -0.6939 1.2665 6 6 4.1060 -1.4253 0.0314 7 7 3.5053 -0.8281 -1.1691 8 6 4.2974 -0.3761 -2.1979 9 7 3.7216 0.0704 -3.3637 10 7 5.5943 -0.3709 -2.0679 11 6 6.4436 -0.0259 -3.2108 12 6 7.1743 1.2603 -2.9234 13 8 7.0030 1.8323 -1.8677 14 7 8.0190 1.7745 -3.8391 15 6 8.6834 2.9449 -3.5778 16 1 8.5302 3.4547 -2.6381 17 6 9.5539 3.4754 -4.5221 18 7 9.7399 2.8554 -5.6658 19 14 10.4597 5.0698 -4.1659 20 1 10.0785 5.5654 -2.8190 21 1 11.9241 4.8273 -4.2084 22 1 10.0961 6.0845 -5.1873 23 6 2.0420 -0.7235 -1.2494 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6577 -0.2243 2.1389 28 1 1.6975 -1.7571 1.2353 29 1 3.9154 0.3401 1.2547 30 1 3.9335 -1.1878 2.1679 31 1 5.1902 -1.3227 -0.0129 32 1 3.8409 -2.4811 0.0885 33 1 4.2488 0.5748 -4.0029 34 1 2.7880 -0.1189 -3.5471 35 1 7.1661 -0.8242 -3.3806 36 1 5.8244 0.0987 -4.0992 37 1 8.1564 1.3170 -4.6832 38 1 10.3473 3.2260 -6.3250 39 1 1.6064 -1.7215 -1.2979 40 1 1.7643 -0.1578 -2.1389 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000262682497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:10 Heat of formation + Delta-G solvation = -28.122106 kcal Electronic energy + Delta-G solvation = -20620.491724 eV Core-core repulsion = 17469.435419 eV Total energy + Delta-G solvation = -3151.056306 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.62010 -39.89806 -37.80616 -35.93522 -34.21444 -33.54156 -33.15054 -32.09989 -29.10824 -27.42282 -26.63031 -25.10084 -23.14427 -21.57438 -20.82025 -20.05520 -19.65719 -18.88990 -17.86506 -17.55333 -16.52717 -16.14093 -15.82947 -15.65405 -15.55482 -15.26711 -15.16790 -14.77502 -14.38407 -13.86123 -13.58659 -13.43833 -13.34267 -13.05736 -12.88145 -12.78837 -12.60451 -12.41761 -12.13142 -11.95577 -11.64986 -11.51849 -11.44943 -11.27418 -10.41321 -10.03544 -9.96512 -9.70827 -8.60666 -8.43170 -5.95288 1.35445 1.39470 1.54311 1.80439 2.02749 2.08972 2.31963 3.06585 3.19580 3.41844 3.75218 3.93085 3.98551 4.17076 4.22428 4.39445 4.42624 4.54894 4.59466 4.65150 4.70090 4.76382 4.88570 4.91866 4.94398 5.10462 5.14506 5.26631 5.34965 5.37471 5.40028 5.55063 5.92885 5.96886 6.01981 6.19853 6.61768 7.12485 7.17918 7.55944 7.72079 8.16106 8.71420 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.033267 B = 0.003640 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.460320 B = 7690.020249 C = 7830.506529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 H 0.046 0.954 4 C -0.106 4.106 5 C -0.134 4.134 6 C 0.135 3.865 7 N -0.610 5.610 8 C 0.619 3.381 9 N -0.887 5.887 10 N -0.672 5.672 11 C 0.084 3.916 12 C 0.436 3.564 13 O -0.625 6.625 14 N -0.575 5.575 15 C -0.334 4.334 16 H 0.073 0.927 17 C -0.013 4.013 18 N -0.920 5.920 19 Si 0.994 3.006 20 H -0.277 1.277 21 H -0.269 1.269 22 H -0.267 1.267 23 C 0.126 3.874 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.034 0.966 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.407 0.593 34 H 0.404 0.596 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.396 0.604 38 H 0.278 0.722 39 H 0.089 0.911 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.039 -10.519 6.085 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.129 4.129 3 H 0.065 0.935 4 C -0.144 4.144 5 C -0.172 4.172 6 C 0.012 3.988 7 N -0.333 5.333 8 C 0.255 3.745 9 N -0.448 5.448 10 N -0.416 5.416 11 C -0.051 4.051 12 C 0.224 3.776 13 O -0.512 6.512 14 N -0.213 5.213 15 C -0.464 4.464 16 H 0.091 0.909 17 C -0.213 4.213 18 N -0.561 5.561 19 Si 0.817 3.183 20 H -0.201 1.201 21 H -0.194 1.194 22 H -0.192 1.192 23 C 0.004 3.996 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.239 0.761 34 H 0.236 0.764 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.411 -10.316 7.346 23.177 hybrid contribution 0.483 1.212 -1.434 1.938 sum -18.928 -9.104 5.912 21.820 Atomic orbital electron populations 1.21721 0.92466 1.03002 1.02367 1.21521 0.97161 0.98806 0.95378 0.93549 1.21544 0.93802 1.01595 0.97413 1.21914 0.97223 0.99979 0.98097 1.21444 0.98632 0.96166 0.82540 1.46102 1.04903 1.65947 1.16394 1.19023 0.87403 0.86446 0.81640 1.43023 1.16240 1.64540 1.20972 1.72374 1.00898 1.40197 1.28169 1.21161 0.96803 0.93659 0.93460 1.21284 0.83143 0.88600 0.84621 1.90454 1.68525 1.64451 1.27722 1.41973 1.39162 1.22579 1.17595 1.19670 1.22603 1.00930 1.03176 0.90934 1.26039 0.97872 1.02670 0.94672 1.69684 1.37841 1.41153 1.07468 0.84868 0.77992 0.77248 0.78168 1.20139 1.19413 1.19233 1.21823 0.77578 1.01559 0.98690 0.92166 0.92122 0.90939 0.91252 0.89925 0.94718 0.89500 0.91335 0.90272 0.76094 0.76442 0.89118 0.91340 0.77032 0.91267 0.89335 0.89931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.20 71.98 0.66 -0.81 16 2 C -0.11 -1.77 2.87 -10.72 -0.03 -1.80 16 3 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 4 C -0.11 -1.65 5.17 30.62 0.16 -1.49 16 5 C -0.13 -2.89 6.08 30.67 0.19 -2.70 16 6 C 0.14 3.37 6.46 86.36 0.56 3.93 16 7 N -0.61 -15.52 3.05 -706.03 -2.15 -17.67 16 8 C 0.62 19.88 8.38 260.54 2.18 22.07 16 9 N -0.89 -22.12 8.41 -58.57 -0.49 -22.61 16 10 N -0.67 -27.42 8.63 -353.10 -3.05 -30.46 16 11 C 0.08 3.48 6.67 85.63 0.57 4.05 16 12 C 0.44 23.43 7.85 87.66 0.69 24.11 16 13 O -0.63 -39.34 16.01 -3.06 -0.05 -39.38 16 14 N -0.58 -31.87 5.29 -306.99 -1.62 -33.49 16 15 C -0.33 -20.18 9.68 84.04 0.81 -19.37 16 16 H 0.07 4.72 7.16 -2.91 -0.02 4.70 16 17 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 18 N -0.92 -51.37 13.05 21.66 0.28 -51.08 16 19 Si 0.99 44.72 29.55 68.60 2.03 46.74 16 20 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 23 C 0.13 2.10 5.63 86.36 0.49 2.59 16 24 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 2.24 6.91 -2.39 -0.02 2.22 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.41 10.90 6.59 -92.71 -0.61 10.29 16 34 H 0.40 6.98 6.81 -92.70 -0.63 6.34 16 35 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 36 H 0.07 2.39 5.69 -2.39 -0.01 2.38 16 37 H 0.40 20.66 7.90 -92.71 -0.73 19.93 16 38 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.21 5.95 -2.38 -0.01 1.19 16 Total: -1.00 -77.88 323.66 0.79 -77.10 By element: Atomic # 1 Polarization: 41.45 SS G_CDS: -0.90 Total: 40.55 kcal Atomic # 6 Polarization: 23.57 SS G_CDS: 6.74 Total: 30.32 kcal Atomic # 7 Polarization: -148.29 SS G_CDS: -7.03 Total: -155.33 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -0.05 Total: -39.38 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -77.88 0.79 -77.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262682497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.977 kcal (2) G-P(sol) polarization free energy of solvation -77.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds