Wall clock time and date at job start Mon Mar 30 2020 01:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00328 * 2 1 4 4 H 1.48501 * 109.47128 * 271.97905 * 3 2 1 5 5 H 1.48504 * 109.46972 * 31.97601 * 3 2 1 6 6 H 1.48503 * 109.47349 * 151.97483 * 3 2 1 7 7 C 1.38816 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99497 * 339.43900 * 7 2 1 9 9 N 1.36934 * 120.00389 * 159.44239 * 7 2 1 10 10 C 1.47081 * 120.87687 * 333.51106 * 9 7 2 11 11 C 1.53240 * 108.51814 * 231.16173 * 10 9 7 12 12 N 1.46903 * 109.33837 * 306.17086 * 11 10 9 13 13 C 1.46904 * 110.99920 * 187.25258 * 12 11 10 14 14 C 1.52999 * 109.47129 * 169.99927 * 13 12 11 15 15 C 1.52997 * 109.47338 * 180.02562 * 14 13 12 16 16 C 1.53178 * 109.54416 * 65.17775 * 15 14 13 17 17 C 1.53282 * 109.06420 * 176.85473 * 16 15 14 18 18 O 1.42896 * 109.46119 * 302.44219 * 17 16 15 19 19 C 1.42908 * 114.09797 * 61.16046 * 18 17 16 20 20 C 1.53089 * 109.41109 * 298.84237 * 19 18 17 21 21 C 1.46898 * 111.27261 * 63.10436 * 12 11 10 22 22 C 1.47082 * 120.88385 * 153.48092 * 9 7 2 23 23 H 0.97003 * 119.99489 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.63129 * 111.45703 * 10 9 7 25 25 H 1.08993 * 109.79267 * 350.96076 * 10 9 7 26 26 H 1.08995 * 109.49709 * 186.21063 * 11 10 9 27 27 H 1.09002 * 109.49793 * 66.12819 * 11 10 9 28 28 H 1.09001 * 109.47378 * 50.00270 * 13 12 11 29 29 H 1.09001 * 109.47218 * 289.99875 * 13 12 11 30 30 H 1.08998 * 109.47195 * 60.00075 * 14 13 12 31 31 H 1.09001 * 109.47028 * 300.00064 * 14 13 12 32 32 H 1.08999 * 109.54526 * 305.00192 * 15 14 13 33 33 H 1.09001 * 109.52100 * 296.84295 * 16 15 14 34 34 H 1.09001 * 109.52781 * 57.03159 * 16 15 14 35 35 H 1.09001 * 109.45640 * 182.44551 * 17 16 15 36 36 H 1.09004 * 109.46864 * 62.44598 * 17 16 15 37 37 H 1.08994 * 109.48162 * 178.86151 * 19 18 17 38 38 H 1.09000 * 109.49061 * 58.82628 * 19 18 17 39 39 H 1.09004 * 109.52277 * 297.70180 * 20 19 18 40 40 H 1.09002 * 109.57369 * 177.54736 * 20 19 18 41 41 H 1.09004 * 109.48757 * 56.85583 * 21 12 11 42 42 H 1.08996 * 109.49797 * 176.93285 * 21 12 11 43 43 H 1.09000 * 109.63073 * 248.54883 * 22 9 7 44 44 H 1.08998 * 109.62616 * 9.13075 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4559 2.0705 -1.3992 5 1 1.4693 2.6402 0.7415 6 1 3.5681 1.4284 0.6578 7 6 2.0103 -1.2022 -0.0005 8 1 1.5218 -2.1078 0.3276 9 7 3.3142 -1.2399 -0.4170 10 6 3.8307 -0.2473 -1.3716 11 6 4.5271 -0.9900 -2.5169 12 7 5.5361 -1.9024 -1.9625 13 6 6.3438 -2.5060 -3.0309 14 6 7.5324 -3.2469 -2.4151 15 6 8.3739 -3.8750 -3.5278 16 6 8.9933 -2.7693 -4.3881 17 6 9.8961 -3.4075 -5.4498 18 8 10.8972 -4.2006 -4.8090 19 6 10.3765 -5.2783 -4.0281 20 6 9.4947 -4.7166 -2.9098 21 6 4.9160 -2.9364 -1.1233 22 6 4.2356 -2.2735 0.0790 23 1 -0.4849 0.8401 -0.0004 24 1 4.5454 0.4054 -0.8705 25 1 3.0073 0.3469 -1.7679 26 1 5.0112 -0.2698 -3.1764 27 1 3.7902 -1.5621 -3.0808 28 1 6.7086 -1.7238 -3.6966 29 1 5.7315 -3.2083 -3.5966 30 1 7.1676 -4.0291 -1.7494 31 1 8.1447 -2.5446 -1.8494 32 1 7.7418 -4.5094 -4.1491 33 1 8.2015 -2.1998 -4.8748 34 1 9.5856 -2.1059 -3.7578 35 1 10.3743 -2.6243 -6.0381 36 1 9.2961 -4.0391 -6.1049 37 1 11.2007 -5.8428 -3.5923 38 1 9.7826 -5.9346 -4.6643 39 1 10.0971 -4.0925 -2.2497 40 1 9.0612 -5.5379 -2.3392 41 1 4.1737 -3.4813 -1.7067 42 1 5.6821 -3.6277 -0.7722 43 1 4.9891 -1.8154 0.7196 44 1 3.6776 -3.0215 0.6424 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310194108.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:57 Heat of formation + Delta-G solvation = -26.577598 kcal Electronic energy + Delta-G solvation = -21266.580766 eV Core-core repulsion = 18219.131779 eV Total energy + Delta-G solvation = -3047.448987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.74965 -38.39420 -35.80755 -34.07534 -31.64573 -31.33681 -30.51383 -29.52836 -26.63982 -24.36565 -23.74269 -23.38612 -22.28155 -21.11857 -20.16594 -19.38276 -16.89214 -16.37411 -16.26983 -15.52407 -15.43017 -14.95014 -14.55360 -14.40795 -14.33313 -14.03544 -13.76652 -13.55251 -12.82180 -12.66058 -12.40835 -12.35479 -12.08691 -11.71148 -11.65742 -11.56193 -11.22696 -10.94009 -10.92347 -10.70988 -10.47576 -10.29309 -10.27872 -10.03441 -9.82353 -9.65907 -9.43752 -8.63561 -7.96299 -6.94277 -5.93548 -3.28462 3.33522 3.50348 3.55364 3.62051 4.13226 4.46099 4.54759 4.56059 4.69104 4.75446 4.92795 4.99365 5.13168 5.15656 5.19783 5.33480 5.37829 5.42930 5.47066 5.58251 5.61382 5.65709 5.73087 5.79468 5.82877 5.87943 5.97323 5.98929 6.05284 6.08805 6.16996 6.23677 6.33059 6.43291 6.59517 6.66979 6.90116 6.92832 7.47899 7.50505 7.95966 8.33778 8.94748 9.73403 10.13284 11.22594 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.045452 B = 0.003613 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.883135 B = 7747.752602 C = 8056.729762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.021 3.979 3 Si 0.884 3.116 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.259 4.259 8 H 0.085 0.915 9 N -0.609 5.609 10 C 0.130 3.870 11 C 0.044 3.956 12 N -0.536 5.536 13 C 0.055 3.945 14 C -0.109 4.109 15 C -0.088 4.088 16 C -0.152 4.152 17 C 0.060 3.940 18 O -0.386 6.386 19 C 0.060 3.940 20 C -0.150 4.150 21 C 0.040 3.960 22 C 0.152 3.848 23 H 0.262 0.738 24 H 0.032 0.968 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.034 0.966 28 H 0.069 0.931 29 H 0.026 0.974 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.031 0.969 42 H 0.068 0.932 43 H 0.030 0.970 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.389 -8.596 -9.370 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.715 3.285 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.387 4.387 8 H 0.103 0.897 9 N -0.333 5.333 10 C 0.004 3.996 11 C -0.086 4.086 12 N -0.260 5.260 13 C -0.074 4.074 14 C -0.146 4.146 15 C -0.107 4.107 16 C -0.190 4.190 17 C -0.017 4.017 18 O -0.305 6.305 19 C -0.016 4.016 20 C -0.188 4.188 21 C -0.089 4.089 22 C 0.025 3.975 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.086 0.914 43 H 0.048 0.952 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 19.708 -8.195 -9.056 23.186 hybrid contribution -0.530 0.473 -0.515 0.878 sum 19.178 -7.722 -9.571 22.782 Atomic orbital electron populations 1.69840 1.05726 1.26536 1.53288 1.25265 0.95250 0.97625 0.99619 0.86936 0.79999 0.84500 0.77070 1.21641 1.23186 1.19454 1.18938 0.84828 0.94800 1.40117 0.89714 1.44413 1.08504 1.32206 1.48203 1.21417 0.96464 0.91963 0.89722 1.22619 0.92840 0.95500 0.97596 1.61934 1.24332 1.18924 1.20836 1.22138 0.94370 0.97431 0.93425 1.21622 0.96166 0.99636 0.97217 1.21187 0.96014 0.96520 0.97020 1.22331 0.99630 0.98545 0.98449 1.22633 0.90589 0.94376 0.94104 1.87919 1.32964 1.43728 1.65844 1.22577 0.97982 0.88813 0.92255 1.22238 0.97551 1.00405 0.98623 1.22674 0.96675 0.93252 0.96322 1.21008 0.92015 0.91550 0.92877 0.92794 0.95003 0.90816 0.91790 0.94783 0.91222 0.95572 0.91689 0.91043 0.91317 0.90596 0.90829 0.89024 0.93369 0.89043 0.93362 0.90886 0.90844 0.95116 0.91399 0.95249 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.26 13.97 55.49 0.78 -27.48 16 2 C 0.02 0.62 5.24 -17.43 -0.09 0.53 16 3 Si 0.88 22.79 24.30 -169.99 -4.13 18.66 16 4 H -0.29 -7.13 6.58 56.52 0.37 -6.75 16 5 H -0.30 -7.93 7.11 56.52 0.40 -7.52 16 6 H -0.27 -6.90 6.61 56.52 0.37 -6.53 16 7 C -0.26 -7.38 10.08 -15.06 -0.15 -7.53 16 8 H 0.09 2.56 8.05 -52.49 -0.42 2.14 16 9 N -0.61 -14.96 2.82 -172.01 -0.48 -15.45 16 10 C 0.13 2.94 4.35 -3.60 -0.02 2.93 16 11 C 0.04 0.82 5.62 -3.70 -0.02 0.79 16 12 N -0.54 -8.97 4.63 -234.32 -1.08 -10.06 16 13 C 0.05 0.71 4.72 -3.82 -0.02 0.69 16 14 C -0.11 -1.19 4.62 -26.73 -0.12 -1.32 16 15 C -0.09 -0.81 2.27 -90.44 -0.21 -1.01 16 16 C -0.15 -1.34 5.12 -26.49 -0.14 -1.48 16 17 C 0.06 0.51 6.85 37.30 0.26 0.76 16 18 O -0.39 -3.95 10.77 -35.23 -0.38 -4.33 16 19 C 0.06 0.49 6.84 37.20 0.25 0.75 16 20 C -0.15 -1.25 5.42 -26.59 -0.14 -1.40 16 21 C 0.04 0.68 5.46 -3.70 -0.02 0.66 16 22 C 0.15 3.09 6.69 -3.60 -0.02 3.07 16 23 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 24 H 0.03 0.73 6.94 -51.93 -0.36 0.37 16 25 H 0.07 1.80 4.61 -51.93 -0.24 1.56 16 26 H 0.06 1.04 7.99 -51.93 -0.41 0.63 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.85 6.48 -51.93 -0.34 0.52 16 29 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 30 H 0.06 0.73 6.40 -51.93 -0.33 0.40 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.65 6.74 -51.93 -0.35 0.30 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.98 6.16 -51.93 -0.32 0.66 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 1.27 7.95 -51.93 -0.41 0.86 16 LS Contribution 325.52 15.07 4.91 4.91 Total: -1.00 -31.50 325.52 -8.72 -40.21 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -7.88 Total: -3.91 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.44 Total: -2.55 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.79 Total: -52.99 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -0.38 Total: -4.33 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.13 Total: 18.66 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.50 -8.72 -40.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310194108.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.636 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds