Wall clock time and date at job start Mon Mar 30 2020 01:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00328 * 2 1 4 4 H 1.48501 * 109.47128 * 271.97905 * 3 2 1 5 5 H 1.48504 * 109.46972 * 31.97601 * 3 2 1 6 6 H 1.48503 * 109.47349 * 151.97483 * 3 2 1 7 7 C 1.38816 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99497 * 339.43900 * 7 2 1 9 9 N 1.36934 * 120.00389 * 159.44239 * 7 2 1 10 10 C 1.47081 * 120.87687 * 333.51106 * 9 7 2 11 11 C 1.53240 * 108.51814 * 231.16173 * 10 9 7 12 12 N 1.46903 * 109.33837 * 306.17086 * 11 10 9 13 13 C 1.46904 * 110.99920 * 187.25258 * 12 11 10 14 14 C 1.52999 * 109.47129 * 169.99927 * 13 12 11 15 15 C 1.52997 * 109.47338 * 180.02562 * 14 13 12 16 16 C 1.53178 * 109.54416 * 65.17775 * 15 14 13 17 17 C 1.53282 * 109.06420 * 176.85473 * 16 15 14 18 18 O 1.42896 * 109.46119 * 302.44219 * 17 16 15 19 19 C 1.42908 * 114.09797 * 61.16046 * 18 17 16 20 20 C 1.53089 * 109.41109 * 298.84237 * 19 18 17 21 21 C 1.46898 * 111.27261 * 63.10436 * 12 11 10 22 22 C 1.47082 * 120.88385 * 153.48092 * 9 7 2 23 23 H 0.97003 * 119.99489 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.63129 * 111.45703 * 10 9 7 25 25 H 1.08993 * 109.79267 * 350.96076 * 10 9 7 26 26 H 1.08995 * 109.49709 * 186.21063 * 11 10 9 27 27 H 1.09002 * 109.49793 * 66.12819 * 11 10 9 28 28 H 1.09001 * 109.47378 * 50.00270 * 13 12 11 29 29 H 1.09001 * 109.47218 * 289.99875 * 13 12 11 30 30 H 1.08998 * 109.47195 * 60.00075 * 14 13 12 31 31 H 1.09001 * 109.47028 * 300.00064 * 14 13 12 32 32 H 1.08999 * 109.54526 * 305.00192 * 15 14 13 33 33 H 1.09001 * 109.52100 * 296.84295 * 16 15 14 34 34 H 1.09001 * 109.52781 * 57.03159 * 16 15 14 35 35 H 1.09001 * 109.45640 * 182.44551 * 17 16 15 36 36 H 1.09004 * 109.46864 * 62.44598 * 17 16 15 37 37 H 1.08994 * 109.48162 * 178.86151 * 19 18 17 38 38 H 1.09000 * 109.49061 * 58.82628 * 19 18 17 39 39 H 1.09004 * 109.52277 * 297.70180 * 20 19 18 40 40 H 1.09002 * 109.57369 * 177.54736 * 20 19 18 41 41 H 1.09004 * 109.48757 * 56.85583 * 21 12 11 42 42 H 1.08996 * 109.49797 * 176.93285 * 21 12 11 43 43 H 1.09000 * 109.63073 * 248.54883 * 22 9 7 44 44 H 1.08998 * 109.62616 * 9.13075 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4559 2.0705 -1.3992 5 1 1.4693 2.6402 0.7415 6 1 3.5681 1.4284 0.6578 7 6 2.0103 -1.2022 -0.0005 8 1 1.5218 -2.1078 0.3276 9 7 3.3142 -1.2399 -0.4170 10 6 3.8307 -0.2473 -1.3716 11 6 4.5271 -0.9900 -2.5169 12 7 5.5361 -1.9024 -1.9625 13 6 6.3438 -2.5060 -3.0309 14 6 7.5324 -3.2469 -2.4151 15 6 8.3739 -3.8750 -3.5278 16 6 8.9933 -2.7693 -4.3881 17 6 9.8961 -3.4075 -5.4498 18 8 10.8972 -4.2006 -4.8090 19 6 10.3765 -5.2783 -4.0281 20 6 9.4947 -4.7166 -2.9098 21 6 4.9160 -2.9364 -1.1233 22 6 4.2356 -2.2735 0.0790 23 1 -0.4849 0.8401 -0.0004 24 1 4.5454 0.4054 -0.8705 25 1 3.0073 0.3469 -1.7679 26 1 5.0112 -0.2698 -3.1764 27 1 3.7902 -1.5621 -3.0808 28 1 6.7086 -1.7238 -3.6966 29 1 5.7315 -3.2083 -3.5966 30 1 7.1676 -4.0291 -1.7494 31 1 8.1447 -2.5446 -1.8494 32 1 7.7418 -4.5094 -4.1491 33 1 8.2015 -2.1998 -4.8748 34 1 9.5856 -2.1059 -3.7578 35 1 10.3743 -2.6243 -6.0381 36 1 9.2961 -4.0391 -6.1049 37 1 11.2007 -5.8428 -3.5923 38 1 9.7826 -5.9346 -4.6643 39 1 10.0971 -4.0925 -2.2497 40 1 9.0612 -5.5379 -2.3392 41 1 4.1737 -3.4813 -1.7067 42 1 5.6821 -3.6277 -0.7722 43 1 4.9891 -1.8154 0.7196 44 1 3.6776 -3.0215 0.6424 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310194108.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:56 Heat of formation + Delta-G solvation = -48.315109 kcal Electronic energy + Delta-G solvation = -21267.523375 eV Core-core repulsion = 18219.131779 eV Total energy + Delta-G solvation = -3048.391596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.52196 -39.76944 -37.04132 -35.42109 -33.60913 -32.07276 -31.99964 -30.73026 -28.13961 -25.63792 -24.89758 -24.46181 -23.84346 -22.18438 -20.99619 -20.88088 -18.83379 -17.44694 -17.06449 -16.92362 -16.40214 -16.08748 -15.86900 -15.72195 -15.63438 -15.41838 -15.13047 -14.58252 -14.43394 -14.12434 -13.90571 -13.41650 -13.18879 -13.03489 -12.97230 -12.58481 -12.35405 -12.26577 -12.17439 -12.00935 -11.84212 -11.72184 -11.57902 -11.49983 -11.12572 -11.07756 -10.72472 -10.39308 -9.36435 -8.91525 -8.19164 -5.50734 1.28221 1.40449 1.50498 2.39784 2.86203 3.02146 3.05757 3.34214 3.73119 3.80972 3.95023 4.11727 4.15656 4.17419 4.20728 4.31838 4.36619 4.46102 4.50446 4.52648 4.58780 4.65308 4.67255 4.71778 4.80082 4.81962 4.83654 4.89556 4.93845 4.99626 5.05650 5.11792 5.20510 5.23178 5.27678 5.34173 5.53067 5.80398 6.07306 6.11825 6.24499 6.30792 6.87276 7.58516 8.01488 9.00821 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.045452 B = 0.003613 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.883135 B = 7747.752602 C = 8056.729762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.036 4.036 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.309 1.309 6 H -0.265 1.265 7 C -0.251 4.251 8 H 0.052 0.948 9 N -0.625 5.625 10 C 0.125 3.875 11 C 0.053 3.947 12 N -0.541 5.541 13 C 0.057 3.943 14 C -0.100 4.100 15 C -0.084 4.084 16 C -0.150 4.150 17 C 0.057 3.943 18 O -0.407 6.407 19 C 0.057 3.943 20 C -0.147 4.147 21 C 0.051 3.949 22 C 0.145 3.855 23 H 0.262 0.738 24 H 0.034 0.966 25 H 0.053 0.947 26 H 0.093 0.907 27 H 0.021 0.979 28 H 0.082 0.918 29 H 0.027 0.973 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.102 0.898 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.018 0.982 42 H 0.100 0.900 43 H 0.036 0.964 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.937 -8.784 -10.486 25.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.230 4.230 3 Si 0.778 3.222 4 H -0.197 1.197 5 H -0.238 1.238 6 H -0.190 1.190 7 C -0.381 4.381 8 H 0.070 0.930 9 N -0.350 5.350 10 C 0.000 4.000 11 C -0.076 4.076 12 N -0.266 5.266 13 C -0.070 4.070 14 C -0.138 4.138 15 C -0.103 4.103 16 C -0.187 4.187 17 C -0.019 4.019 18 O -0.326 6.326 19 C -0.020 4.020 20 C -0.185 4.185 21 C -0.078 4.078 22 C 0.020 3.980 23 H 0.071 0.929 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.111 0.889 27 H 0.040 0.960 28 H 0.100 0.900 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.074 0.926 37 H 0.120 0.880 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.036 0.964 42 H 0.118 0.882 43 H 0.054 0.946 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 22.311 -8.404 -10.191 25.928 hybrid contribution -1.295 0.423 -0.162 1.372 sum 21.016 -7.980 -10.352 24.749 Atomic orbital electron populations 1.69965 1.07373 1.27295 1.55754 1.25893 0.95873 1.00995 1.00288 0.85878 0.78422 0.80043 0.77814 1.19729 1.23797 1.19004 1.18892 0.86611 0.93681 1.38873 0.92982 1.44568 1.07774 1.33538 1.49106 1.21445 0.96003 0.91972 0.90598 1.22429 0.93111 0.96095 0.96005 1.61930 1.23530 1.19002 1.22115 1.22220 0.94297 0.97904 0.92612 1.21538 0.95365 0.99241 0.97622 1.21142 0.96028 0.96657 0.96485 1.22304 0.99673 0.98337 0.98410 1.22729 0.90485 0.94658 0.94066 1.87895 1.34086 1.44401 1.66252 1.22706 0.98523 0.88541 0.92182 1.22208 0.97203 1.00472 0.98630 1.22515 0.97065 0.93294 0.94881 1.21195 0.91525 0.90676 0.94564 0.92867 0.94798 0.92872 0.88910 0.96025 0.90004 0.95430 0.91684 0.91676 0.90915 0.90137 0.91680 0.88177 0.92559 0.87961 0.92531 0.91628 0.89851 0.96378 0.88171 0.94628 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.06 13.97 21.65 0.30 -60.76 16 2 C -0.04 -2.13 5.24 84.86 0.45 -1.69 16 3 Si 0.95 47.53 24.30 68.60 1.67 49.20 16 4 H -0.27 -12.65 6.58 99.48 0.65 -11.99 16 5 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 6 H -0.27 -12.94 6.61 99.48 0.66 -12.28 16 7 C -0.25 -14.63 10.08 84.03 0.85 -13.78 16 8 H 0.05 3.30 8.05 -2.91 -0.02 3.27 16 9 N -0.62 -30.49 2.82 -698.13 -1.97 -32.46 16 10 C 0.12 5.47 4.35 86.35 0.38 5.84 16 11 C 0.05 1.85 5.62 86.38 0.49 2.34 16 12 N -0.54 -16.60 4.63 -895.24 -4.14 -20.74 16 13 C 0.06 1.30 4.72 86.30 0.41 1.71 16 14 C -0.10 -1.88 4.62 30.59 0.14 -1.74 16 15 C -0.08 -1.29 2.27 -10.68 -0.02 -1.32 16 16 C -0.15 -2.26 5.12 30.75 0.16 -2.10 16 17 C 0.06 0.83 6.85 72.08 0.49 1.33 16 18 O -0.41 -7.49 10.77 -148.98 -1.60 -9.09 16 19 C 0.06 0.79 6.84 72.01 0.49 1.28 16 20 C -0.15 -2.08 5.42 30.68 0.17 -1.91 16 21 C 0.05 1.65 5.46 86.38 0.47 2.12 16 22 C 0.15 5.78 6.69 86.35 0.58 6.36 16 23 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 24 H 0.03 1.48 6.94 -2.39 -0.02 1.46 16 25 H 0.05 2.53 4.61 -2.39 -0.01 2.52 16 26 H 0.09 2.71 7.99 -2.39 -0.02 2.69 16 27 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 28 H 0.08 1.70 6.48 -2.39 -0.02 1.69 16 29 H 0.03 0.64 8.12 -2.39 -0.02 0.62 16 30 H 0.06 1.23 6.40 -2.39 -0.02 1.21 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.13 6.74 -2.39 -0.02 1.11 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.10 2.58 6.16 -2.39 -0.01 2.57 16 43 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.06 2.40 7.95 -2.39 -0.02 2.38 16 Total: -1.00 -68.16 325.52 0.14 -68.03 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.85 Total: 7.39 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 5.04 Total: -1.56 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -5.81 Total: -113.96 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -1.60 Total: -9.09 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 1.67 Total: 49.20 kcal Total: -68.16 0.14 -68.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310194108.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.710 kcal (2) G-P(sol) polarization free energy of solvation -68.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds