Wall clock time and date at job start Mon Mar 30 2020 01:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53041 * 109.46323 * 2 1 4 4 C 1.53189 * 109.31621 * 181.37395 * 3 2 1 5 5 N 1.46933 * 108.77196 * 305.36698 * 4 3 2 6 6 C 1.34779 * 120.62793 * 233.58162 * 5 4 3 7 7 O 1.21586 * 119.99900 * 5.22563 * 6 5 4 8 8 N 1.34778 * 119.99935 * 185.21977 * 6 5 4 9 9 C 1.46502 * 119.99582 * 175.01517 * 8 6 5 10 10 C 1.53000 * 109.46534 * 180.02562 * 9 8 6 11 11 C 1.52993 * 109.47462 * 300.00333 * 10 9 8 12 12 C 1.53008 * 109.47233 * 60.00335 * 10 9 8 13 13 C 1.50704 * 109.46817 * 179.97438 * 10 9 8 14 14 H 1.07991 * 120.00260 * 0.02562 * 13 10 9 15 15 C 1.37882 * 119.99579 * 180.02562 * 13 10 9 16 16 N 1.31510 * 120.00586 * 359.97438 * 15 13 10 17 17 Si 1.86804 * 119.99736 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.46897 * 89.99688 * 17 15 13 19 19 H 1.48493 * 109.47108 * 210.00092 * 17 15 13 20 20 H 1.48507 * 109.47009 * 329.99931 * 17 15 13 21 21 C 1.46924 * 118.73982 * 53.85715 * 5 4 3 22 22 C 1.53042 * 109.45033 * 120.06340 * 2 1 3 23 23 H 1.09000 * 109.47218 * 59.99337 * 1 2 3 24 24 H 1.09001 * 109.47448 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47025 * 300.00300 * 1 2 3 26 26 H 1.09005 * 109.45974 * 240.02830 * 2 1 3 27 27 H 1.09006 * 109.49766 * 61.41963 * 3 2 1 28 28 H 1.08998 * 109.49747 * 301.32664 * 3 2 1 29 29 H 1.08993 * 109.58861 * 185.58030 * 4 3 2 30 30 H 1.08997 * 109.70246 * 65.21948 * 4 3 2 31 31 H 0.96998 * 119.99957 * 355.01868 * 8 6 5 32 32 H 1.08999 * 109.46950 * 60.00577 * 9 8 6 33 33 H 1.08994 * 109.47292 * 299.99762 * 9 8 6 34 34 H 1.08997 * 109.47817 * 60.00140 * 11 10 9 35 35 H 1.09004 * 109.47177 * 180.02562 * 11 10 9 36 36 H 1.09004 * 109.46800 * 299.99901 * 11 10 9 37 37 H 1.09003 * 109.46940 * 59.99619 * 12 10 9 38 38 H 1.08994 * 109.47197 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.47047 * 299.99845 * 12 10 9 40 40 H 0.96999 * 120.00270 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.58342 * 65.93187 * 21 5 4 42 42 H 1.09000 * 109.58624 * 186.35188 * 21 5 4 43 43 H 1.08997 * 109.49669 * 298.57217 * 22 2 1 44 44 H 1.08996 * 109.49534 * 58.66470 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4430 0.0000 4 6 3.5714 1.4392 -0.0347 5 7 4.0676 0.6237 1.0824 6 6 4.9617 1.1274 1.9561 7 8 5.2936 2.2947 1.8813 8 7 5.4879 0.3372 2.9127 9 6 6.5393 0.8534 3.7927 10 6 6.9583 -0.2372 4.7806 11 6 5.7502 -0.6560 5.6207 12 6 7.4876 -1.4481 4.0094 13 6 8.0404 0.2935 5.6854 14 1 8.3935 1.3073 5.5679 15 6 8.5794 -0.5153 6.6634 16 7 8.1491 -1.7497 6.8069 17 14 9.9202 0.1427 7.7854 18 1 9.3018 0.7604 8.9860 19 1 10.8071 -0.9724 8.2036 20 1 10.7172 1.1633 7.0585 21 6 3.5753 -0.7532 1.2252 22 6 2.0396 -0.7229 1.2489 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8931 -0.5135 -0.8903 27 1 1.6977 1.9498 0.9023 28 1 1.6575 1.9640 -0.8777 29 1 3.9417 2.4594 0.0650 30 1 3.9166 1.0156 -0.9778 31 1 5.1704 -0.5732 3.0186 32 1 6.1624 1.7162 4.3418 33 1 7.4002 1.1512 3.1943 34 1 4.9678 -1.0400 4.9660 35 1 6.0488 -1.4326 6.3248 36 1 5.3732 0.2067 6.1701 37 1 8.3484 -1.1497 3.4109 38 1 7.7865 -2.2248 4.7132 39 1 6.7053 -1.8321 3.3546 40 1 8.5281 -2.3186 7.4951 41 1 3.9188 -1.3533 0.3826 42 1 3.9482 -1.1798 2.1564 43 1 1.6974 -0.1958 2.1395 44 1 1.6569 -1.7434 1.2601 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315897323.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:46 Heat of formation + Delta-G solvation = -45.978576 kcal Electronic energy + Delta-G solvation = -21585.361953 eV Core-core repulsion = 18537.071677 eV Total energy + Delta-G solvation = -3048.290277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.14083 -37.85692 -36.27538 -33.91219 -33.17354 -31.26741 -30.51012 -28.24387 -25.70328 -25.56861 -24.84827 -23.45232 -22.95916 -20.64500 -19.33156 -18.82344 -17.85198 -15.94775 -15.66298 -15.31445 -14.85851 -14.67862 -14.43421 -13.90934 -13.89810 -13.65921 -13.38729 -12.88325 -12.67341 -12.60442 -12.11874 -12.00339 -11.95838 -11.38149 -11.34597 -11.17468 -11.05398 -10.83980 -10.67098 -10.61815 -10.48658 -10.35873 -10.17432 -9.66200 -9.60501 -9.26812 -8.76748 -8.62286 -8.37761 -8.07089 -6.00016 -4.09742 3.01704 3.30059 3.36881 3.41436 3.64527 4.31441 4.44180 4.57346 4.63223 4.69513 5.00316 5.17743 5.26771 5.28417 5.34373 5.45530 5.47801 5.62923 5.67069 5.78362 5.84518 5.94736 5.96739 5.99369 6.24784 6.26833 6.40302 6.53258 6.69009 6.83753 6.84552 6.95699 7.05859 7.14444 7.31844 7.42817 7.58176 7.71981 8.03373 8.14766 8.40475 8.47760 8.90156 9.08383 9.55870 11.01447 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038831 B = 0.004035 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.893939 B = 6937.597058 C = 7314.500520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.129 4.129 4 C 0.130 3.870 5 N -0.635 5.635 6 C 0.701 3.299 7 O -0.599 6.599 8 N -0.734 5.734 9 C 0.149 3.851 10 C 0.056 3.944 11 C -0.129 4.129 12 C -0.129 4.129 13 C -0.504 4.504 14 H 0.058 0.942 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.112 3.888 22 C -0.130 4.130 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.393 0.607 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.004 0.996 35 H 0.085 0.915 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.085 0.915 39 H 0.004 0.996 40 H 0.259 0.741 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.219 -0.996 -12.526 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.168 4.168 4 C 0.006 3.994 5 N -0.374 5.374 6 C 0.403 3.597 7 O -0.479 6.479 8 N -0.390 5.390 9 C 0.026 3.974 10 C 0.055 3.945 11 C -0.186 4.186 12 C -0.186 4.186 13 C -0.543 4.543 14 H 0.076 0.924 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.012 4.012 22 C -0.168 4.168 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.230 0.770 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.023 0.977 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.104 0.896 39 H 0.023 0.977 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.880 -0.300 -12.433 17.904 hybrid contribution 0.508 -0.208 0.696 0.887 sum -12.371 -0.508 -11.737 17.060 Atomic orbital electron populations 1.21825 0.95171 1.01613 1.01748 1.21111 0.95523 0.96153 0.98245 1.22002 0.95723 0.96533 1.02522 1.21365 0.93012 0.97089 0.87889 1.47264 1.46232 1.14045 1.29889 1.15990 0.79149 0.84948 0.79643 1.90858 1.65702 1.15607 1.75694 1.45681 1.42104 1.16099 1.35140 1.21582 0.87202 0.97922 0.90674 1.18367 0.93973 0.90919 0.91264 1.21810 0.95509 1.01326 1.00003 1.21812 0.97289 1.01058 0.98487 1.20994 1.19247 0.98811 1.15261 0.92398 1.24877 0.96707 0.94823 0.97109 1.69803 1.42570 1.06644 1.33506 0.86571 0.81817 0.78517 0.80963 1.20727 1.21300 1.19893 1.21674 0.94104 0.83374 1.02062 1.22063 0.95180 1.00960 0.98610 0.92755 0.92719 0.92704 0.91121 0.91487 0.91033 0.88955 0.92250 0.76989 0.92949 0.93071 0.97712 0.89640 0.95450 0.95453 0.89637 0.97692 0.93050 0.91572 0.90244 0.91336 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.19 37.16 0.34 -0.74 16 2 C -0.09 -0.79 2.68 -90.58 -0.24 -1.03 16 3 C -0.13 -1.26 5.36 -26.61 -0.14 -1.41 16 4 C 0.13 1.59 6.44 -3.71 -0.02 1.57 16 5 N -0.64 -9.21 2.97 -178.24 -0.53 -9.74 16 6 C 0.70 13.31 8.30 -86.91 -0.72 12.59 16 7 O -0.60 -13.57 15.77 5.29 0.08 -13.49 16 8 N -0.73 -13.93 4.87 -65.23 -0.32 -14.25 16 9 C 0.15 3.31 4.51 -4.04 -0.02 3.29 16 10 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 11 C -0.13 -2.95 8.08 37.15 0.30 -2.65 16 12 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 13 C -0.50 -13.38 8.01 -34.44 -0.28 -13.66 16 14 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 15 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 16 N -0.89 -23.70 9.35 55.43 0.52 -23.19 16 17 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 C 0.11 1.27 6.42 -3.49 -0.02 1.25 16 22 C -0.13 -1.23 5.38 -26.39 -0.14 -1.37 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.09 1.31 6.99 -51.93 -0.36 0.95 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.39 6.75 3.65 -40.82 -0.15 6.60 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 35 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 39 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 40 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.94 5.64 -51.93 -0.29 0.65 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 334.09 15.07 5.03 5.03 Total: -1.00 -29.25 334.09 -8.66 -37.91 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -7.61 Total: 3.77 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -0.82 Total: -1.90 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.33 Total: -47.17 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.08 Total: -13.49 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.25 -8.66 -37.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315897323.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.072 kcal (2) G-P(sol) polarization free energy of solvation -29.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds