Wall clock time and date at job start Mon Mar 30 2020 01:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53041 * 109.46323 * 2 1 4 4 C 1.53189 * 109.31621 * 181.37395 * 3 2 1 5 5 N 1.46933 * 108.77196 * 305.36698 * 4 3 2 6 6 C 1.34779 * 120.62793 * 233.58162 * 5 4 3 7 7 O 1.21586 * 119.99900 * 5.22563 * 6 5 4 8 8 N 1.34778 * 119.99935 * 185.21977 * 6 5 4 9 9 C 1.46502 * 119.99582 * 175.01517 * 8 6 5 10 10 C 1.53000 * 109.46534 * 180.02562 * 9 8 6 11 11 C 1.52993 * 109.47462 * 300.00333 * 10 9 8 12 12 C 1.53008 * 109.47233 * 60.00335 * 10 9 8 13 13 C 1.50704 * 109.46817 * 179.97438 * 10 9 8 14 14 H 1.07991 * 120.00260 * 0.02562 * 13 10 9 15 15 C 1.37882 * 119.99579 * 180.02562 * 13 10 9 16 16 N 1.31510 * 120.00586 * 359.97438 * 15 13 10 17 17 Si 1.86804 * 119.99736 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.46897 * 89.99688 * 17 15 13 19 19 H 1.48493 * 109.47108 * 210.00092 * 17 15 13 20 20 H 1.48507 * 109.47009 * 329.99931 * 17 15 13 21 21 C 1.46924 * 118.73982 * 53.85715 * 5 4 3 22 22 C 1.53042 * 109.45033 * 120.06340 * 2 1 3 23 23 H 1.09000 * 109.47218 * 59.99337 * 1 2 3 24 24 H 1.09001 * 109.47448 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47025 * 300.00300 * 1 2 3 26 26 H 1.09005 * 109.45974 * 240.02830 * 2 1 3 27 27 H 1.09006 * 109.49766 * 61.41963 * 3 2 1 28 28 H 1.08998 * 109.49747 * 301.32664 * 3 2 1 29 29 H 1.08993 * 109.58861 * 185.58030 * 4 3 2 30 30 H 1.08997 * 109.70246 * 65.21948 * 4 3 2 31 31 H 0.96998 * 119.99957 * 355.01868 * 8 6 5 32 32 H 1.08999 * 109.46950 * 60.00577 * 9 8 6 33 33 H 1.08994 * 109.47292 * 299.99762 * 9 8 6 34 34 H 1.08997 * 109.47817 * 60.00140 * 11 10 9 35 35 H 1.09004 * 109.47177 * 180.02562 * 11 10 9 36 36 H 1.09004 * 109.46800 * 299.99901 * 11 10 9 37 37 H 1.09003 * 109.46940 * 59.99619 * 12 10 9 38 38 H 1.08994 * 109.47197 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.47047 * 299.99845 * 12 10 9 40 40 H 0.96999 * 120.00270 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.58342 * 65.93187 * 21 5 4 42 42 H 1.09000 * 109.58624 * 186.35188 * 21 5 4 43 43 H 1.08997 * 109.49669 * 298.57217 * 22 2 1 44 44 H 1.08996 * 109.49534 * 58.66470 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4430 0.0000 4 6 3.5714 1.4392 -0.0347 5 7 4.0676 0.6237 1.0824 6 6 4.9617 1.1274 1.9561 7 8 5.2936 2.2947 1.8813 8 7 5.4879 0.3372 2.9127 9 6 6.5393 0.8534 3.7927 10 6 6.9583 -0.2372 4.7806 11 6 5.7502 -0.6560 5.6207 12 6 7.4876 -1.4481 4.0094 13 6 8.0404 0.2935 5.6854 14 1 8.3935 1.3073 5.5679 15 6 8.5794 -0.5153 6.6634 16 7 8.1491 -1.7497 6.8069 17 14 9.9202 0.1427 7.7854 18 1 9.3018 0.7604 8.9860 19 1 10.8071 -0.9724 8.2036 20 1 10.7172 1.1633 7.0585 21 6 3.5753 -0.7532 1.2252 22 6 2.0396 -0.7229 1.2489 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8931 -0.5135 -0.8903 27 1 1.6977 1.9498 0.9023 28 1 1.6575 1.9640 -0.8777 29 1 3.9417 2.4594 0.0650 30 1 3.9166 1.0156 -0.9778 31 1 5.1704 -0.5732 3.0186 32 1 6.1624 1.7162 4.3418 33 1 7.4002 1.1512 3.1943 34 1 4.9678 -1.0400 4.9660 35 1 6.0488 -1.4326 6.3248 36 1 5.3732 0.2067 6.1701 37 1 8.3484 -1.1497 3.4109 38 1 7.7865 -2.2248 4.7132 39 1 6.7053 -1.8321 3.3546 40 1 8.5281 -2.3186 7.4951 41 1 3.9188 -1.3533 0.3826 42 1 3.9482 -1.1798 2.1564 43 1 1.6974 -0.1958 2.1395 44 1 1.6569 -1.7434 1.2601 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315897323.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:46 Heat of formation + Delta-G solvation = -62.111009 kcal Electronic energy + Delta-G solvation = -21586.061508 eV Core-core repulsion = 18537.071677 eV Total energy + Delta-G solvation = -3048.989832 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.45730 -39.06086 -37.98713 -35.25653 -34.63593 -32.76950 -31.78243 -29.16744 -27.57491 -27.44022 -26.58654 -24.35714 -24.00907 -21.68034 -20.63495 -20.53703 -19.16463 -17.81747 -17.15142 -16.70694 -16.59062 -15.63578 -15.42073 -15.24154 -15.06738 -15.00256 -14.60768 -14.39171 -14.17271 -14.06288 -13.44947 -13.21019 -13.09427 -12.76856 -12.68786 -12.66401 -12.58462 -12.25972 -12.20891 -12.12258 -11.82261 -11.49375 -11.45149 -11.29712 -11.25105 -11.01807 -10.71282 -10.39928 -10.10721 -9.40842 -8.02007 -6.17628 1.43237 1.45799 1.54195 1.73843 2.16179 2.46426 3.05420 3.21532 3.80835 3.86082 3.90656 4.15214 4.34240 4.40339 4.44253 4.51828 4.56147 4.69162 4.74727 4.78849 4.88670 4.93625 4.96181 5.00690 5.04177 5.09490 5.10965 5.14383 5.18843 5.23801 5.37771 5.39904 5.55809 5.60079 5.66322 5.66547 5.68005 5.99434 6.14155 6.21076 6.43736 6.85998 7.03239 7.49926 7.60112 8.97124 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038831 B = 0.004035 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.893939 B = 6937.597058 C = 7314.500520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.122 4.122 4 C 0.124 3.876 5 N -0.628 5.628 6 C 0.695 3.305 7 O -0.643 6.643 8 N -0.728 5.728 9 C 0.167 3.833 10 C 0.052 3.948 11 C -0.118 4.118 12 C -0.117 4.117 13 C -0.530 4.530 14 H 0.044 0.956 15 C 0.029 3.971 16 N -0.898 5.898 17 Si 0.946 3.054 18 H -0.279 1.279 19 H -0.281 1.281 20 H -0.276 1.276 21 C 0.104 3.896 22 C -0.126 4.126 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.045 0.955 26 H 0.086 0.914 27 H 0.048 0.952 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.403 0.597 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.033 0.967 35 H 0.064 0.936 36 H 0.016 0.984 37 H 0.018 0.982 38 H 0.064 0.936 39 H 0.034 0.966 40 H 0.261 0.739 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.052 0.948 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.602 -2.288 -13.854 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C -0.161 4.161 4 C 0.002 3.998 5 N -0.366 5.366 6 C 0.397 3.603 7 O -0.526 6.526 8 N -0.385 5.385 9 C 0.042 3.958 10 C 0.051 3.949 11 C -0.175 4.175 12 C -0.175 4.175 13 C -0.568 4.568 14 H 0.062 0.938 15 C -0.170 4.170 16 N -0.537 5.537 17 Si 0.773 3.227 18 H -0.205 1.205 19 H -0.207 1.207 20 H -0.201 1.201 21 C -0.018 4.018 22 C -0.164 4.164 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.104 0.896 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.242 0.758 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.035 0.965 37 H 0.037 0.963 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.308 -1.635 -13.789 19.938 hybrid contribution 0.897 0.193 1.056 1.399 sum -13.412 -1.443 -12.733 18.549 Atomic orbital electron populations 1.21790 0.94076 1.02340 1.01829 1.21115 0.96363 0.94913 0.98285 1.21960 0.93600 0.97864 1.02642 1.21574 0.94787 0.95632 0.87849 1.47369 1.44657 1.15524 1.29008 1.16178 0.79756 0.84352 0.80058 1.90825 1.67374 1.17550 1.76837 1.45397 1.41584 1.16550 1.34975 1.21131 0.87397 0.96864 0.90381 1.18365 0.93677 0.91479 0.91380 1.21644 0.95902 1.00173 0.99819 1.21641 0.97858 0.99885 0.98126 1.21260 1.20576 0.98499 1.16509 0.93795 1.25442 0.98347 0.95131 0.98124 1.69897 1.43033 1.07065 1.33702 0.85748 0.79694 0.77983 0.79309 1.20508 1.20687 1.20134 1.21968 0.95525 0.81516 1.02786 1.22056 0.93525 1.02319 0.98491 0.91818 0.91674 0.93554 0.89605 0.93360 0.88865 0.91559 0.89965 0.75756 0.94929 0.94739 0.94821 0.91687 0.96483 0.96318 0.91725 0.94722 0.92971 0.89262 0.90778 0.92945 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.19 71.98 0.66 -1.00 16 2 C -0.09 -1.22 2.68 -10.77 -0.03 -1.25 16 3 C -0.12 -2.14 5.36 30.67 0.16 -1.97 16 4 C 0.12 2.88 6.44 86.36 0.56 3.43 16 5 N -0.63 -17.39 2.97 -836.08 -2.48 -19.87 16 6 C 0.70 26.35 8.30 179.05 1.49 27.83 16 7 O -0.64 -29.87 15.77 -3.99 -0.06 -29.93 16 8 N -0.73 -27.32 4.87 -478.54 -2.33 -29.65 16 9 C 0.17 7.52 4.51 86.38 0.39 7.91 16 10 C 0.05 2.45 0.50 -52.93 -0.03 2.43 16 11 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 12 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 13 C -0.53 -28.55 8.01 25.60 0.21 -28.35 16 14 H 0.04 2.43 7.74 -2.92 -0.02 2.40 16 15 C 0.03 1.56 5.15 84.66 0.44 2.00 16 16 N -0.90 -47.99 9.35 21.45 0.20 -47.79 16 17 Si 0.95 42.95 29.54 68.60 2.03 44.98 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 C 0.10 2.09 6.42 86.51 0.56 2.65 16 22 C -0.13 -2.01 5.38 30.82 0.17 -1.85 16 23 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 1.90 6.99 -2.39 -0.02 1.88 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.40 13.23 3.65 -92.71 -0.34 12.89 16 32 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.03 1.28 6.86 -2.39 -0.02 1.27 16 35 H 0.06 3.24 6.07 -2.38 -0.01 3.23 16 36 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 39 H 0.03 1.31 6.86 -2.39 -0.02 1.29 16 40 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 41 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.07 1.57 5.64 -2.39 -0.01 1.55 16 43 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.10 1.14 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -63.84 334.09 3.71 -60.13 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.63 Total: 19.76 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 5.73 Total: 2.37 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -4.61 Total: -97.31 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.06 Total: -29.93 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -63.84 3.71 -60.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315897323.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.979 kcal (2) G-P(sol) polarization free energy of solvation -63.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds