Wall clock time and date at job start Mon Mar 30 2020 01:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53120 * 109.52243 * 2 1 4 4 C 1.53044 * 109.27734 * 182.38010 * 3 2 1 5 5 N 1.46842 * 109.52377 * 59.18367 * 4 3 2 6 6 C 1.46896 * 111.00157 * 174.16194 * 5 4 3 7 7 C 1.53006 * 109.47501 * 169.99662 * 6 5 4 8 8 C 1.52999 * 109.47000 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46626 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.46998 * 179.97438 * 9 8 7 11 11 C 1.34769 * 120.00241 * 180.02562 * 10 9 8 12 12 O 1.21687 * 119.99929 * 359.97438 * 11 10 9 13 13 C 1.46374 * 120.00398 * 179.97438 * 11 10 9 14 14 H 1.08003 * 119.99673 * 0.02562 * 13 11 10 15 15 C 1.40044 * 120.00240 * 179.97438 * 13 11 10 16 16 N 1.30677 * 120.00175 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00070 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46950 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46997 * 120.00261 * 17 15 13 20 20 H 1.48501 * 109.47438 * 240.00376 * 17 15 13 21 21 C 1.46855 * 111.19343 * 298.25530 * 5 4 3 22 22 C 1.53029 * 109.52511 * 61.74740 * 21 5 4 23 23 H 1.09003 * 109.47250 * 59.99424 * 1 2 3 24 24 H 1.08994 * 109.47158 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46686 * 299.99972 * 1 2 3 26 26 H 1.08995 * 109.52813 * 120.12836 * 2 1 3 27 27 H 1.08996 * 109.50464 * 62.43895 * 3 2 1 28 28 H 1.09003 * 109.53770 * 302.33538 * 3 2 1 29 29 H 1.08999 * 109.46355 * 299.16490 * 4 3 2 30 30 H 1.09000 * 109.45306 * 179.18860 * 4 3 2 31 31 H 1.09004 * 109.47072 * 49.99478 * 6 5 4 32 32 H 1.09000 * 109.47017 * 289.99516 * 6 5 4 33 33 H 1.08993 * 109.46765 * 59.99547 * 7 6 5 34 34 H 1.09000 * 109.46866 * 299.99947 * 7 6 5 35 35 H 1.08993 * 109.47839 * 60.00073 * 8 7 6 36 36 H 1.09000 * 109.47160 * 299.99635 * 8 7 6 37 37 H 1.09000 * 109.47050 * 299.99699 * 9 8 7 38 38 H 1.09001 * 109.46801 * 59.99811 * 9 8 7 39 39 H 0.97010 * 119.99910 * 359.97438 * 10 9 8 40 40 H 0.96992 * 120.00053 * 179.97438 * 16 15 13 41 41 H 1.09007 * 109.46078 * 181.76118 * 21 5 4 42 42 H 1.08997 * 109.46448 * 301.72560 * 21 5 4 43 43 H 1.08995 * 109.50701 * 180.87973 * 22 21 5 44 44 H 1.09004 * 109.50903 * 60.75603 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4432 0.0000 4 6 3.5709 1.4370 -0.0600 5 7 4.0115 0.7426 -1.2765 6 6 5.4685 0.8374 -1.4384 7 6 5.9184 -0.0961 -2.5641 8 6 7.4360 0.0022 -2.7322 9 6 7.8858 -0.9308 -3.8583 10 7 9.3388 -0.8363 -4.0197 11 6 9.9618 -1.5740 -4.9599 12 8 9.3174 -2.3189 -5.6745 13 6 11.4135 -1.4791 -5.1216 14 1 11.9854 -0.8182 -4.4871 15 6 12.0609 -2.2460 -6.0983 16 7 11.3690 -3.0460 -6.8657 17 14 13.9134 -2.1244 -6.3051 18 1 14.4587 -1.1546 -5.3215 19 1 14.5256 -3.4579 -6.0764 20 1 14.2288 -1.6644 -7.6814 21 6 3.5721 -0.6586 -1.2767 22 6 2.0430 -0.7151 -1.2531 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8943 -0.5156 0.8885 27 1 1.7152 1.9450 0.9108 28 1 1.6456 1.9704 -0.8680 29 1 3.9667 0.9224 0.8155 30 1 3.9377 2.4633 -0.0747 31 1 5.9570 0.5469 -0.5083 32 1 5.7404 1.8633 -1.6867 33 1 5.4298 0.1944 -3.4940 34 1 5.6464 -1.1220 -2.3158 35 1 7.9242 -0.2885 -1.8021 36 1 7.7083 1.0281 -2.9802 37 1 7.6134 -1.9568 -3.6107 38 1 7.3975 -0.6396 -4.7883 39 1 9.8524 -0.2421 -3.4503 40 1 11.8173 -3.5769 -7.5424 41 1 3.9400 -1.1545 -2.1750 42 1 3.9678 -1.1635 -0.3955 43 1 1.7174 -1.7552 -1.2374 44 1 1.6468 -0.2224 -2.1411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330882224.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:58 Heat of formation + Delta-G solvation = -67.211368 kcal Electronic energy + Delta-G solvation = -20070.001314 eV Core-core repulsion = 17020.790314 eV Total energy + Delta-G solvation = -3049.211000 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.51263 -37.39088 -35.91929 -34.11417 -32.48615 -31.69577 -30.99591 -28.86862 -26.92882 -25.51636 -23.74276 -22.84589 -21.57861 -20.60116 -19.87342 -19.50726 -17.12206 -16.10203 -15.71616 -15.27561 -15.12371 -14.76375 -14.59230 -14.36773 -14.13037 -13.90666 -13.57927 -13.06984 -12.67276 -12.49268 -12.34940 -12.16922 -12.00428 -11.64036 -11.49487 -11.37745 -11.20167 -11.00033 -10.95513 -10.91029 -10.75815 -10.50322 -10.44236 -10.37639 -10.18401 -10.13695 -8.83060 -8.44106 -7.57082 -7.44102 -6.15331 -4.60570 3.14738 3.22615 3.27291 3.71485 4.13372 4.47854 4.53477 4.55316 4.62751 4.75443 4.99024 5.01563 5.07962 5.14516 5.22424 5.27879 5.36612 5.40078 5.45033 5.47134 5.55574 5.62232 5.66946 5.69969 5.78177 5.83417 5.84979 5.88801 5.93014 5.95925 6.05621 6.14767 6.19520 6.29080 6.66750 6.68130 6.95550 6.97167 7.46541 7.98102 8.16037 8.37417 9.05791 9.59182 10.64007 10.83048 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.058448 B = 0.002477 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.940375 B =11302.984591 C =11666.343763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.111 4.111 4 C 0.055 3.945 5 N -0.538 5.538 6 C 0.057 3.943 7 C -0.119 4.119 8 C -0.126 4.126 9 C 0.134 3.866 10 N -0.770 5.770 11 C 0.553 3.447 12 O -0.582 6.582 13 C -0.546 4.546 14 H 0.068 0.932 15 C 0.086 3.914 16 N -0.769 5.769 17 Si 0.908 3.092 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.276 1.276 21 C 0.046 3.954 22 C -0.112 4.112 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.047 0.953 39 H 0.379 0.621 40 H 0.267 0.733 41 H 0.086 0.914 42 H 0.030 0.970 43 H 0.065 0.935 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.096 8.348 14.913 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.149 4.149 4 C -0.073 4.073 5 N -0.263 5.263 6 C -0.070 4.070 7 C -0.157 4.157 8 C -0.165 4.165 9 C 0.009 3.991 10 N -0.425 5.425 11 C 0.357 3.643 12 O -0.465 6.465 13 C -0.583 4.583 14 H 0.086 0.914 15 C -0.133 4.133 16 N -0.398 5.398 17 Si 0.732 3.268 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.081 4.081 22 C -0.150 4.150 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.210 0.790 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.049 0.951 43 H 0.084 0.916 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.812 7.884 13.828 23.888 hybrid contribution 1.561 -0.047 0.925 1.816 sum -16.250 7.837 14.753 23.306 Atomic orbital electron populations 1.21808 0.95166 1.01628 1.01697 1.21196 0.95568 0.96272 0.98368 1.21642 0.94684 0.96503 1.02023 1.22075 0.95768 0.98929 0.90534 1.61995 1.12728 1.14239 1.37353 1.22152 0.86448 1.00696 0.97740 1.21671 0.95717 0.99421 0.98937 1.21738 0.95008 1.00435 0.99278 1.20841 0.84191 0.97744 0.96366 1.46138 1.05429 1.49573 1.41370 1.18232 0.88556 0.79048 0.78473 1.90593 1.67633 1.41481 1.46815 1.20933 0.90889 1.26780 1.19698 0.91424 1.25723 0.99594 0.93604 0.94388 1.70038 1.36191 1.18654 1.14910 0.86323 0.83185 0.78615 0.78645 1.18803 1.20194 1.20172 1.22246 0.95521 0.89019 1.01357 1.21663 0.94884 1.00207 0.98237 0.92568 0.92768 0.92887 0.91730 0.91801 0.91048 0.95150 0.90868 0.94990 0.90628 0.90814 0.91546 0.92005 0.91708 0.93661 0.93490 0.78959 0.92207 0.89574 0.95126 0.91643 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.20 37.16 0.34 -0.62 16 2 C -0.10 -0.74 2.79 -90.49 -0.25 -0.99 16 3 C -0.11 -0.87 5.38 -26.65 -0.14 -1.01 16 4 C 0.05 0.49 5.42 -3.83 -0.02 0.47 16 5 N -0.54 -5.64 4.81 -234.66 -1.13 -6.76 16 6 C 0.06 0.61 5.27 -3.82 -0.02 0.59 16 7 C -0.12 -1.45 4.46 -26.73 -0.12 -1.57 16 8 C -0.13 -1.77 5.33 -26.73 -0.14 -1.91 16 9 C 0.13 2.62 5.67 -4.04 -0.02 2.60 16 10 N -0.77 -17.73 5.55 -61.72 -0.34 -18.07 16 11 C 0.55 16.23 7.75 -12.99 -0.10 16.13 16 12 O -0.58 -19.45 15.02 5.20 0.08 -19.37 16 13 C -0.55 -15.77 9.54 -35.63 -0.34 -16.11 16 14 H 0.07 1.79 7.85 -52.48 -0.41 1.37 16 15 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 16 N -0.77 -23.54 11.83 55.55 0.66 -22.88 16 17 Si 0.91 20.42 29.56 -169.99 -5.02 15.40 16 18 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 21 C 0.05 0.46 4.85 -3.83 -0.02 0.45 16 22 C -0.11 -0.97 5.38 -26.65 -0.14 -1.11 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 31 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.81 6.21 -51.93 -0.32 0.49 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.38 7.61 8.45 -40.82 -0.35 7.27 16 40 H 0.27 7.37 8.29 -40.82 -0.34 7.04 16 41 H 0.09 0.91 5.81 -51.92 -0.30 0.61 16 42 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 347.72 15.07 5.24 5.24 Total: -1.00 -34.32 347.72 -9.72 -44.04 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -8.12 Total: 3.13 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.08 Total: -0.73 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: -0.81 Total: -47.72 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.08 Total: -19.37 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.32 -9.72 -44.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330882224.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.171 kcal (2) G-P(sol) polarization free energy of solvation -34.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds