Wall clock time and date at job start Mon Mar 30 2020 01:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53120 * 109.52243 * 2 1 4 4 C 1.53044 * 109.27734 * 182.38010 * 3 2 1 5 5 N 1.46842 * 109.52377 * 59.18367 * 4 3 2 6 6 C 1.46896 * 111.00157 * 174.16194 * 5 4 3 7 7 C 1.53006 * 109.47501 * 169.99662 * 6 5 4 8 8 C 1.52999 * 109.47000 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46626 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.46998 * 179.97438 * 9 8 7 11 11 C 1.34769 * 120.00241 * 180.02562 * 10 9 8 12 12 O 1.21687 * 119.99929 * 359.97438 * 11 10 9 13 13 C 1.46374 * 120.00398 * 179.97438 * 11 10 9 14 14 H 1.08003 * 119.99673 * 0.02562 * 13 11 10 15 15 C 1.40044 * 120.00240 * 179.97438 * 13 11 10 16 16 N 1.30677 * 120.00175 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00070 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46950 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46997 * 120.00261 * 17 15 13 20 20 H 1.48501 * 109.47438 * 240.00376 * 17 15 13 21 21 C 1.46855 * 111.19343 * 298.25530 * 5 4 3 22 22 C 1.53029 * 109.52511 * 61.74740 * 21 5 4 23 23 H 1.09003 * 109.47250 * 59.99424 * 1 2 3 24 24 H 1.08994 * 109.47158 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46686 * 299.99972 * 1 2 3 26 26 H 1.08995 * 109.52813 * 120.12836 * 2 1 3 27 27 H 1.08996 * 109.50464 * 62.43895 * 3 2 1 28 28 H 1.09003 * 109.53770 * 302.33538 * 3 2 1 29 29 H 1.08999 * 109.46355 * 299.16490 * 4 3 2 30 30 H 1.09000 * 109.45306 * 179.18860 * 4 3 2 31 31 H 1.09004 * 109.47072 * 49.99478 * 6 5 4 32 32 H 1.09000 * 109.47017 * 289.99516 * 6 5 4 33 33 H 1.08993 * 109.46765 * 59.99547 * 7 6 5 34 34 H 1.09000 * 109.46866 * 299.99947 * 7 6 5 35 35 H 1.08993 * 109.47839 * 60.00073 * 8 7 6 36 36 H 1.09000 * 109.47160 * 299.99635 * 8 7 6 37 37 H 1.09000 * 109.47050 * 299.99699 * 9 8 7 38 38 H 1.09001 * 109.46801 * 59.99811 * 9 8 7 39 39 H 0.97010 * 119.99910 * 359.97438 * 10 9 8 40 40 H 0.96992 * 120.00053 * 179.97438 * 16 15 13 41 41 H 1.09007 * 109.46078 * 181.76118 * 21 5 4 42 42 H 1.08997 * 109.46448 * 301.72560 * 21 5 4 43 43 H 1.08995 * 109.50701 * 180.87973 * 22 21 5 44 44 H 1.09004 * 109.50903 * 60.75603 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4432 0.0000 4 6 3.5709 1.4370 -0.0600 5 7 4.0115 0.7426 -1.2765 6 6 5.4685 0.8374 -1.4384 7 6 5.9184 -0.0961 -2.5641 8 6 7.4360 0.0022 -2.7322 9 6 7.8858 -0.9308 -3.8583 10 7 9.3388 -0.8363 -4.0197 11 6 9.9618 -1.5740 -4.9599 12 8 9.3174 -2.3189 -5.6745 13 6 11.4135 -1.4791 -5.1216 14 1 11.9854 -0.8182 -4.4871 15 6 12.0609 -2.2460 -6.0983 16 7 11.3690 -3.0460 -6.8657 17 14 13.9134 -2.1244 -6.3051 18 1 14.4587 -1.1546 -5.3215 19 1 14.5256 -3.4579 -6.0764 20 1 14.2288 -1.6644 -7.6814 21 6 3.5721 -0.6586 -1.2767 22 6 2.0430 -0.7151 -1.2531 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8943 -0.5156 0.8885 27 1 1.7152 1.9450 0.9108 28 1 1.6456 1.9704 -0.8680 29 1 3.9667 0.9224 0.8155 30 1 3.9377 2.4633 -0.0747 31 1 5.9570 0.5469 -0.5083 32 1 5.7404 1.8633 -1.6867 33 1 5.4298 0.1944 -3.4940 34 1 5.6464 -1.1220 -2.3158 35 1 7.9242 -0.2885 -1.8021 36 1 7.7083 1.0281 -2.9802 37 1 7.6134 -1.9568 -3.6107 38 1 7.3975 -0.6396 -4.7883 39 1 9.8524 -0.2421 -3.4503 40 1 11.8173 -3.5769 -7.5424 41 1 3.9400 -1.1545 -2.1750 42 1 3.9678 -1.1635 -0.3955 43 1 1.7174 -1.7552 -1.2374 44 1 1.6468 -0.2224 -2.1411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330882224.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:57 Heat of formation + Delta-G solvation = -91.258691 kcal Electronic energy + Delta-G solvation = -20071.044084 eV Core-core repulsion = 17020.790314 eV Total energy + Delta-G solvation = -3050.253770 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.27647 -39.43468 -37.04330 -35.51862 -34.56874 -33.19681 -31.76821 -29.98654 -28.54213 -26.98853 -24.53297 -23.88086 -22.65046 -21.85937 -21.32140 -20.54814 -19.16599 -17.46149 -16.91051 -16.81171 -16.31647 -15.88545 -15.80620 -15.56798 -15.32140 -14.92505 -14.78452 -14.37591 -14.07020 -13.71286 -13.33590 -13.22759 -13.13994 -12.91041 -12.78399 -12.68637 -12.55623 -12.38093 -12.26996 -12.10441 -11.99968 -11.90462 -11.59334 -11.50167 -11.14706 -10.98071 -10.95340 -9.88425 -9.49120 -9.24015 -8.29991 -6.86724 1.40264 1.40622 1.58977 2.24760 2.46199 2.87490 3.20843 3.60878 3.78684 3.87832 3.89885 3.94788 4.02202 4.27348 4.34592 4.38649 4.41644 4.49328 4.58440 4.61379 4.72172 4.73997 4.78038 4.83788 4.85821 4.95072 4.95774 5.03235 5.05253 5.15381 5.26008 5.28317 5.31567 5.31957 5.33650 5.37275 5.55213 5.87331 6.14783 6.20371 6.24510 6.27708 6.85780 7.55640 8.48522 8.66870 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.058448 B = 0.002477 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.940375 B =11302.984591 C =11666.343763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C -0.107 4.107 4 C 0.053 3.947 5 N -0.548 5.548 6 C 0.063 3.937 7 C -0.112 4.112 8 C -0.108 4.108 9 C 0.134 3.866 10 N -0.757 5.757 11 C 0.533 3.467 12 O -0.636 6.636 13 C -0.573 4.573 14 H 0.089 0.911 15 C 0.025 3.975 16 N -0.824 5.824 17 Si 1.002 2.998 18 H -0.245 1.245 19 H -0.268 1.268 20 H -0.268 1.268 21 C 0.045 3.955 22 C -0.110 4.110 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.030 0.970 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.027 0.973 38 H 0.028 0.972 39 H 0.396 0.604 40 H 0.275 0.725 41 H 0.075 0.925 42 H 0.028 0.972 43 H 0.071 0.929 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.267 9.763 16.528 25.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.145 4.145 4 C -0.074 4.074 5 N -0.273 5.273 6 C -0.064 4.064 7 C -0.150 4.150 8 C -0.146 4.146 9 C 0.009 3.991 10 N -0.412 5.412 11 C 0.337 3.663 12 O -0.524 6.524 13 C -0.610 4.610 14 H 0.108 0.892 15 C -0.190 4.190 16 N -0.453 5.453 17 Si 0.821 3.179 18 H -0.168 1.168 19 H -0.193 1.193 20 H -0.193 1.193 21 C -0.082 4.082 22 C -0.148 4.148 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.230 0.770 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.046 0.954 43 H 0.089 0.911 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.005 9.347 15.501 24.836 hybrid contribution 1.228 -0.486 0.439 1.392 sum -15.776 8.862 15.940 24.115 Atomic orbital electron populations 1.21777 0.94210 1.01945 1.02055 1.21190 0.96354 0.96102 0.97641 1.21630 0.93845 0.96558 1.02486 1.22148 0.96542 0.99011 0.89747 1.62016 1.12430 1.14454 1.38442 1.22055 0.86878 1.00445 0.97046 1.21570 0.94180 0.99865 0.99364 1.21588 0.96229 0.99478 0.97314 1.20967 0.82036 0.98308 0.97762 1.45835 1.07001 1.48378 1.39949 1.18697 0.89402 0.79157 0.79019 1.90545 1.68752 1.43916 1.49152 1.21485 0.91197 1.27627 1.20657 0.89249 1.27054 1.06252 0.92398 0.93306 1.70206 1.39437 1.19828 1.15879 0.84919 0.74566 0.79257 0.79180 1.16834 1.19323 1.19314 1.22241 0.96466 0.88869 1.00672 1.21649 0.93894 1.00713 0.98550 0.92736 0.92511 0.91990 0.91770 0.90278 0.91676 0.95132 0.90219 0.94514 0.89953 0.91661 0.91846 0.90653 0.90341 0.95438 0.95370 0.76981 0.91550 0.90681 0.95358 0.91066 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.20 71.98 0.66 -1.00 16 2 C -0.09 -1.33 2.79 -10.71 -0.03 -1.36 16 3 C -0.11 -1.50 5.38 30.65 0.16 -1.33 16 4 C 0.05 0.86 5.42 86.33 0.47 1.33 16 5 N -0.55 -10.86 4.81 -896.34 -4.31 -15.17 16 6 C 0.06 1.26 5.27 86.31 0.46 1.71 16 7 C -0.11 -2.64 4.46 30.60 0.14 -2.50 16 8 C -0.11 -2.90 5.33 30.60 0.16 -2.73 16 9 C 0.13 5.33 5.67 86.38 0.49 5.82 16 10 N -0.76 -35.08 5.55 -467.41 -2.59 -37.68 16 11 C 0.53 32.01 7.75 86.36 0.67 32.68 16 12 O -0.64 -44.25 15.02 -4.31 -0.06 -44.32 16 13 C -0.57 -33.15 9.54 24.83 0.24 -32.91 16 14 H 0.09 4.60 7.85 -2.91 -0.02 4.58 16 15 C 0.02 1.40 5.50 85.30 0.47 1.87 16 16 N -0.82 -51.56 11.83 21.84 0.26 -51.30 16 17 Si 1.00 41.41 29.56 68.60 2.03 43.44 16 18 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 19 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 20 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 21 C 0.05 0.89 4.85 86.32 0.42 1.30 16 22 C -0.11 -1.84 5.38 30.65 0.16 -1.67 16 23 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 31 H 0.04 0.71 8.08 -2.38 -0.02 0.69 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.06 1.54 6.21 -2.39 -0.01 1.53 16 35 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.40 15.51 8.45 -92.70 -0.78 14.72 16 40 H 0.27 15.46 8.29 -92.71 -0.77 14.69 16 41 H 0.07 1.61 5.81 -2.38 -0.01 1.59 16 42 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -76.21 347.72 -0.04 -76.26 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.17 Total: 27.55 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 4.47 Total: 1.21 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -6.64 Total: -104.14 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -0.06 Total: -44.32 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -76.21 -0.04 -76.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330882224.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.001 kcal (2) G-P(sol) polarization free energy of solvation -76.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds