Wall clock time and date at job start Mon Mar 30 2020 01:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53123 * 109.57495 * 2 1 4 4 C 1.53034 * 109.27992 * 177.60435 * 3 2 1 5 5 N 1.46847 * 109.51345 * 300.80438 * 4 3 2 6 6 C 1.46895 * 110.99982 * 185.84805 * 5 4 3 7 7 C 1.53000 * 109.47597 * 189.99795 * 6 5 4 8 8 N 1.46494 * 109.47874 * 179.97438 * 7 6 5 9 9 C 1.34774 * 120.00605 * 180.02562 * 8 7 6 10 10 O 1.21289 * 119.99398 * 359.97438 * 9 8 7 11 11 C 1.50693 * 120.00358 * 179.97438 * 9 8 7 12 12 C 1.52996 * 109.47193 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47402 * 180.02562 * 12 11 9 14 14 H 1.08001 * 119.99849 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00203 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00102 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99929 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46949 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46839 * 120.00451 * 17 15 13 20 20 H 1.48497 * 109.47275 * 240.00480 * 17 15 13 21 21 C 1.46843 * 111.20124 * 61.74903 * 5 4 3 22 22 C 1.53042 * 109.52278 * 298.25596 * 21 5 4 23 23 H 1.09000 * 109.46968 * 300.29446 * 1 2 3 24 24 H 1.09000 * 109.47430 * 60.29800 * 1 2 3 25 25 H 1.09002 * 109.46935 * 180.29882 * 1 2 3 26 26 H 1.09003 * 109.52281 * 239.83230 * 2 1 3 27 27 H 1.08997 * 109.51083 * 57.65029 * 3 2 1 28 28 H 1.08998 * 109.48980 * 297.53960 * 3 2 1 29 29 H 1.09002 * 109.46271 * 180.79158 * 4 3 2 30 30 H 1.08994 * 109.46242 * 60.81457 * 4 3 2 31 31 H 1.08997 * 109.47358 * 309.99752 * 6 5 4 32 32 H 1.09001 * 109.47788 * 69.99563 * 6 5 4 33 33 H 1.09007 * 109.46763 * 300.00403 * 7 6 5 34 34 H 1.09001 * 109.46741 * 59.99127 * 7 6 5 35 35 H 0.97002 * 119.99320 * 359.97438 * 8 7 6 36 36 H 1.08997 * 109.47223 * 300.00314 * 11 9 8 37 37 H 1.09003 * 109.46712 * 60.00046 * 11 9 8 38 38 H 1.08997 * 109.47618 * 300.00471 * 12 11 9 39 39 H 1.09001 * 109.47183 * 60.00105 * 12 11 9 40 40 H 0.96994 * 120.00309 * 179.97438 * 16 15 13 41 41 H 1.08993 * 109.46313 * 58.27251 * 21 5 4 42 42 H 1.09000 * 109.46480 * 178.25361 * 21 5 4 43 43 H 1.08997 * 109.50758 * 179.11703 * 22 21 5 44 44 H 1.08998 * 109.50897 * 299.20258 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0430 1.4427 0.0000 4 6 3.5721 1.4353 0.0604 5 7 4.0116 0.7408 1.2773 6 6 5.4685 0.8344 1.4399 7 6 5.9172 -0.0990 2.5660 8 7 7.3702 -0.0062 2.7278 9 6 7.9924 -0.7453 3.6675 10 8 7.3491 -1.4870 4.3796 11 6 9.4871 -0.6501 3.8334 12 6 9.9357 -1.5835 4.9596 13 6 11.4304 -1.4879 5.1261 14 1 12.0031 -0.8271 4.4922 15 6 12.0667 -2.2432 6.0882 16 7 11.3693 -3.0474 6.8604 17 14 13.9194 -2.1241 6.2949 18 1 14.4659 -1.1549 5.3114 19 1 14.2353 -1.6637 7.6709 20 1 14.5297 -3.4585 6.0671 21 6 3.5710 -0.6600 1.2779 22 6 2.0417 -0.7151 1.2536 23 1 -0.3633 0.5184 0.8873 24 1 -0.3634 0.5092 -0.8926 25 1 -0.3633 -1.0277 0.0054 26 1 1.8942 -0.5163 -0.8882 27 1 1.6470 1.9699 0.8679 28 1 1.7172 1.9445 -0.9111 29 1 3.9400 2.4612 0.0747 30 1 3.9676 0.9199 -0.8148 31 1 5.9573 0.5432 0.5102 32 1 5.7414 1.8602 1.6879 33 1 5.4283 0.1922 3.4958 34 1 5.6443 -1.1248 2.3181 35 1 7.8846 0.5868 2.1580 36 1 9.9752 -0.9415 2.9034 37 1 9.7605 0.3755 4.0814 38 1 9.4475 -1.2917 5.8895 39 1 9.6622 -2.6092 4.7121 40 1 11.8169 -3.5790 7.5370 41 1 3.9666 -1.1655 0.3970 42 1 3.9378 -1.1558 2.1766 43 1 1.7152 -1.7549 1.2381 44 1 1.6456 -0.2224 2.1415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330886111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:24 Heat of formation + Delta-G solvation = -61.864242 kcal Electronic energy + Delta-G solvation = -20143.274406 eV Core-core repulsion = 17094.295275 eV Total energy + Delta-G solvation = -3048.979131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.74390 -38.91628 -35.82242 -33.85455 -33.42271 -31.29350 -30.99250 -29.63476 -27.17241 -25.39526 -23.90575 -22.88123 -21.67317 -21.05845 -19.96839 -19.56648 -16.91520 -16.40466 -15.77611 -15.70840 -15.27646 -14.99963 -14.74687 -14.54744 -14.38203 -14.21134 -13.91230 -13.15925 -12.92746 -12.72765 -12.40097 -12.23336 -12.16774 -12.12318 -11.59527 -11.51508 -11.38077 -11.13753 -10.94510 -10.92806 -10.59499 -10.56477 -10.42294 -9.94127 -9.64882 -9.16345 -8.99676 -8.75419 -8.58748 -8.30841 -5.94731 -3.99024 3.27441 3.28954 3.33489 3.40571 3.43947 3.93233 4.41594 4.48250 4.48408 4.50102 4.68356 4.92209 4.97223 5.07703 5.11659 5.22633 5.28854 5.33162 5.36358 5.40191 5.42174 5.54244 5.56865 5.64000 5.74011 5.81325 5.85080 5.88064 5.89013 5.98182 6.14203 6.25148 6.26647 6.66937 6.80681 6.84212 6.91669 7.76419 7.88420 7.90412 8.09074 8.40460 8.80792 9.09976 9.64434 11.16300 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.060162 B = 0.002536 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.299263 B =11037.601155 C =11385.646966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.111 4.111 4 C 0.056 3.944 5 N -0.533 5.533 6 C 0.046 3.954 7 C 0.116 3.884 8 N -0.745 5.745 9 C 0.510 3.490 10 O -0.534 6.534 11 C -0.129 4.129 12 C 0.036 3.964 13 C -0.526 4.526 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.043 3.957 22 C -0.112 4.112 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.396 0.604 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.024 0.976 39 H 0.023 0.977 40 H 0.260 0.740 41 H 0.033 0.967 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.139 9.749 -16.945 27.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.149 4.149 4 C -0.072 4.072 5 N -0.258 5.258 6 C -0.082 4.082 7 C -0.009 4.009 8 N -0.400 5.400 9 C 0.298 3.702 10 O -0.409 6.409 11 C -0.169 4.169 12 C -0.001 4.001 13 C -0.564 4.564 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.084 4.084 22 C -0.150 4.150 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.230 0.770 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.105 0.895 43 H 0.085 0.915 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.819 9.296 -15.863 27.034 hybrid contribution 1.636 -0.073 -0.868 1.853 sum -18.183 9.224 -16.731 26.375 Atomic orbital electron populations 1.21807 0.95080 1.01697 1.01733 1.21204 0.95667 0.96215 0.98343 1.21641 0.94445 0.96593 1.02176 1.22091 0.95991 0.98915 0.90196 1.61930 1.11474 1.14616 1.37827 1.22262 0.87692 1.00728 0.97500 1.21361 0.81669 0.99207 0.98634 1.46142 1.07419 1.47209 1.39199 1.21557 0.91679 0.78541 0.78400 1.90673 1.67925 1.38138 1.44203 1.21860 0.88285 1.03422 1.03383 1.18906 0.95277 0.94069 0.91897 1.21266 0.92543 1.24677 1.17964 0.92547 1.25036 0.98232 0.95365 0.95845 1.70005 1.35351 1.26404 1.21070 0.86531 0.85689 0.77794 0.77915 1.19763 1.21022 1.21034 1.22297 0.95923 0.88658 1.01537 1.21661 0.94562 1.00408 0.98327 0.92531 0.92855 0.92721 0.91665 0.90941 0.91636 0.90679 0.94931 0.94284 0.89959 0.90944 0.91650 0.77035 0.90285 0.90215 0.95792 0.95838 0.93009 0.94841 0.89507 0.91475 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.20 37.16 0.34 -0.56 16 2 C -0.10 -0.69 2.79 -90.49 -0.25 -0.94 16 3 C -0.11 -0.78 5.38 -26.65 -0.14 -0.93 16 4 C 0.06 0.44 5.42 -3.84 -0.02 0.42 16 5 N -0.53 -5.14 4.80 -234.68 -1.13 -6.27 16 6 C 0.05 0.45 5.39 -3.83 -0.02 0.43 16 7 C 0.12 1.49 4.92 -4.04 -0.02 1.47 16 8 N -0.74 -10.59 5.56 -60.30 -0.33 -10.92 16 9 C 0.51 9.99 7.83 -10.99 -0.09 9.91 16 10 O -0.53 -12.89 15.98 5.55 0.09 -12.81 16 11 C -0.13 -2.66 5.64 -27.89 -0.16 -2.81 16 12 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 13 C -0.53 -15.07 9.11 -34.44 -0.31 -15.39 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -27.68 13.29 55.43 0.74 -26.94 16 17 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 21 C 0.04 0.42 4.85 -3.83 -0.02 0.40 16 22 C -0.11 -0.92 5.38 -26.64 -0.14 -1.07 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.55 8.12 -51.93 -0.42 0.12 16 30 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 34 H 0.07 0.90 6.21 -51.93 -0.32 0.58 16 35 H 0.40 4.33 8.47 -40.82 -0.35 3.99 16 36 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 38 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 0.94 5.81 -51.93 -0.30 0.63 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 349.05 15.07 5.26 5.26 Total: -1.00 -33.79 349.05 -9.56 -43.35 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -8.11 Total: -1.84 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -1.05 Total: -6.63 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: -0.73 Total: -44.13 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.81 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.79 -9.56 -43.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330886111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.511 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds