Wall clock time and date at job start Mon Mar 30 2020 01:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53123 * 109.57495 * 2 1 4 4 C 1.53034 * 109.27992 * 177.60435 * 3 2 1 5 5 N 1.46847 * 109.51345 * 300.80438 * 4 3 2 6 6 C 1.46895 * 110.99982 * 185.84805 * 5 4 3 7 7 C 1.53000 * 109.47597 * 189.99795 * 6 5 4 8 8 N 1.46494 * 109.47874 * 179.97438 * 7 6 5 9 9 C 1.34774 * 120.00605 * 180.02562 * 8 7 6 10 10 O 1.21289 * 119.99398 * 359.97438 * 9 8 7 11 11 C 1.50693 * 120.00358 * 179.97438 * 9 8 7 12 12 C 1.52996 * 109.47193 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47402 * 180.02562 * 12 11 9 14 14 H 1.08001 * 119.99849 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00203 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00102 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99929 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46949 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46839 * 120.00451 * 17 15 13 20 20 H 1.48497 * 109.47275 * 240.00480 * 17 15 13 21 21 C 1.46843 * 111.20124 * 61.74903 * 5 4 3 22 22 C 1.53042 * 109.52278 * 298.25596 * 21 5 4 23 23 H 1.09000 * 109.46968 * 300.29446 * 1 2 3 24 24 H 1.09000 * 109.47430 * 60.29800 * 1 2 3 25 25 H 1.09002 * 109.46935 * 180.29882 * 1 2 3 26 26 H 1.09003 * 109.52281 * 239.83230 * 2 1 3 27 27 H 1.08997 * 109.51083 * 57.65029 * 3 2 1 28 28 H 1.08998 * 109.48980 * 297.53960 * 3 2 1 29 29 H 1.09002 * 109.46271 * 180.79158 * 4 3 2 30 30 H 1.08994 * 109.46242 * 60.81457 * 4 3 2 31 31 H 1.08997 * 109.47358 * 309.99752 * 6 5 4 32 32 H 1.09001 * 109.47788 * 69.99563 * 6 5 4 33 33 H 1.09007 * 109.46763 * 300.00403 * 7 6 5 34 34 H 1.09001 * 109.46741 * 59.99127 * 7 6 5 35 35 H 0.97002 * 119.99320 * 359.97438 * 8 7 6 36 36 H 1.08997 * 109.47223 * 300.00314 * 11 9 8 37 37 H 1.09003 * 109.46712 * 60.00046 * 11 9 8 38 38 H 1.08997 * 109.47618 * 300.00471 * 12 11 9 39 39 H 1.09001 * 109.47183 * 60.00105 * 12 11 9 40 40 H 0.96994 * 120.00309 * 179.97438 * 16 15 13 41 41 H 1.08993 * 109.46313 * 58.27251 * 21 5 4 42 42 H 1.09000 * 109.46480 * 178.25361 * 21 5 4 43 43 H 1.08997 * 109.50758 * 179.11703 * 22 21 5 44 44 H 1.08998 * 109.50897 * 299.20258 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0430 1.4427 0.0000 4 6 3.5721 1.4353 0.0604 5 7 4.0116 0.7408 1.2773 6 6 5.4685 0.8344 1.4399 7 6 5.9172 -0.0990 2.5660 8 7 7.3702 -0.0062 2.7278 9 6 7.9924 -0.7453 3.6675 10 8 7.3491 -1.4870 4.3796 11 6 9.4871 -0.6501 3.8334 12 6 9.9357 -1.5835 4.9596 13 6 11.4304 -1.4879 5.1261 14 1 12.0031 -0.8271 4.4922 15 6 12.0667 -2.2432 6.0882 16 7 11.3693 -3.0474 6.8604 17 14 13.9194 -2.1241 6.2949 18 1 14.4659 -1.1549 5.3114 19 1 14.2353 -1.6637 7.6709 20 1 14.5297 -3.4585 6.0671 21 6 3.5710 -0.6600 1.2779 22 6 2.0417 -0.7151 1.2536 23 1 -0.3633 0.5184 0.8873 24 1 -0.3634 0.5092 -0.8926 25 1 -0.3633 -1.0277 0.0054 26 1 1.8942 -0.5163 -0.8882 27 1 1.6470 1.9699 0.8679 28 1 1.7172 1.9445 -0.9111 29 1 3.9400 2.4612 0.0747 30 1 3.9676 0.9199 -0.8148 31 1 5.9573 0.5432 0.5102 32 1 5.7414 1.8602 1.6879 33 1 5.4283 0.1922 3.4958 34 1 5.6443 -1.1248 2.3181 35 1 7.8846 0.5868 2.1580 36 1 9.9752 -0.9415 2.9034 37 1 9.7605 0.3755 4.0814 38 1 9.4475 -1.2917 5.8895 39 1 9.6622 -2.6092 4.7121 40 1 11.8169 -3.5790 7.5370 41 1 3.9666 -1.1655 0.3970 42 1 3.9378 -1.1558 2.1766 43 1 1.7152 -1.7549 1.2381 44 1 1.6456 -0.2224 2.1415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330886111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:23 Heat of formation + Delta-G solvation = -85.775193 kcal Electronic energy + Delta-G solvation = -20144.311263 eV Core-core repulsion = 17094.295275 eV Total energy + Delta-G solvation = -3050.015988 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.84129 -40.08655 -36.80100 -35.56066 -34.93217 -33.03436 -31.88295 -30.60296 -28.32850 -27.06508 -24.68497 -23.95792 -23.11448 -22.02725 -21.17548 -20.56681 -18.82433 -17.59515 -17.27713 -16.89001 -16.55937 -16.25397 -15.95433 -15.69322 -15.30599 -14.96639 -14.91741 -14.59380 -14.18635 -14.10508 -13.62360 -13.35842 -13.23353 -12.99934 -12.85529 -12.78737 -12.48443 -12.42986 -12.27978 -12.11405 -11.92204 -11.63633 -11.54481 -11.28504 -11.19288 -11.09416 -10.76727 -10.58044 -10.08423 -9.32166 -8.17959 -6.32062 1.42425 1.44032 1.57334 1.70681 2.13005 2.43835 3.03643 3.15052 3.70386 3.86046 3.87207 3.91951 4.06024 4.09130 4.31429 4.40382 4.42905 4.49417 4.52808 4.56238 4.58902 4.71540 4.81112 4.83557 4.88577 4.91062 4.95529 5.02699 5.09806 5.14207 5.22171 5.28456 5.34954 5.43373 5.51684 5.54989 5.63411 5.85862 6.04219 6.11092 6.17742 6.60522 6.86904 7.34203 7.38418 8.95048 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.060162 B = 0.002536 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.299263 B =11037.601155 C =11385.646966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C -0.108 4.108 4 C 0.055 3.945 5 N -0.544 5.544 6 C 0.057 3.943 7 C 0.118 3.882 8 N -0.717 5.717 9 C 0.511 3.489 10 O -0.591 6.591 11 C -0.118 4.118 12 C 0.040 3.960 13 C -0.542 4.542 14 H 0.077 0.923 15 C -0.010 4.010 16 N -0.938 5.938 17 Si 0.976 3.024 18 H -0.252 1.252 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.044 3.956 22 C -0.110 4.110 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.036 0.964 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.418 0.582 36 H 0.106 0.894 37 H 0.106 0.894 38 H -0.019 1.019 39 H -0.019 1.019 40 H 0.263 0.737 41 H 0.033 0.967 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.283 11.774 -19.255 29.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.146 4.146 4 C -0.072 4.072 5 N -0.270 5.270 6 C -0.071 4.071 7 C -0.006 4.006 8 N -0.372 5.372 9 C 0.299 3.701 10 O -0.471 6.471 11 C -0.158 4.158 12 C 0.003 3.997 13 C -0.579 4.579 14 H 0.095 0.905 15 C -0.207 4.207 16 N -0.579 5.579 17 Si 0.799 3.201 18 H -0.175 1.175 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.084 4.084 22 C -0.148 4.148 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.255 0.745 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.000 1.000 39 H 0.000 1.000 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.968 11.382 -18.243 28.673 hybrid contribution 1.291 -0.702 -0.164 1.479 sum -17.677 10.680 -18.407 27.665 Atomic orbital electron populations 1.21780 0.94274 1.01908 1.02089 1.21192 0.96328 0.96226 0.97492 1.21636 0.93856 0.96423 1.02663 1.22173 0.96546 0.99201 0.89325 1.61958 1.11288 1.14538 1.39172 1.22164 0.88033 1.00420 0.96445 1.21393 0.80261 0.99663 0.99256 1.45798 1.08255 1.45654 1.37455 1.21373 0.91383 0.78526 0.78814 1.90661 1.68793 1.40867 1.46737 1.21633 0.89225 1.03050 1.01881 1.18707 0.95096 0.93343 0.92600 1.21756 0.93224 1.24781 1.18180 0.90454 1.26172 1.04328 0.94779 0.95406 1.70185 1.38036 1.27631 1.22013 0.85246 0.78289 0.78249 0.78278 1.17512 1.20669 1.20654 1.22250 0.96823 0.88787 1.00547 1.21646 0.93617 1.00793 0.98749 0.92777 0.91880 0.92627 0.91563 0.91647 0.89995 0.89602 0.94598 0.92929 0.88494 0.92757 0.92746 0.74511 0.87585 0.87556 1.00011 1.00010 0.92868 0.94840 0.91438 0.91161 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.20 71.98 0.66 -0.90 16 2 C -0.09 -1.21 2.79 -10.71 -0.03 -1.24 16 3 C -0.11 -1.31 5.38 30.65 0.16 -1.15 16 4 C 0.05 0.75 5.42 86.32 0.47 1.21 16 5 N -0.54 -9.74 4.80 -896.40 -4.31 -14.05 16 6 C 0.06 1.00 5.39 86.30 0.46 1.46 16 7 C 0.12 2.99 4.92 86.38 0.43 3.41 16 8 N -0.72 -19.37 5.56 -463.06 -2.57 -21.94 16 9 C 0.51 20.07 7.83 87.66 0.69 20.75 16 10 O -0.59 -29.83 15.98 -3.06 -0.05 -29.88 16 11 C -0.12 -4.75 5.64 29.84 0.17 -4.58 16 12 C 0.04 2.27 4.26 29.85 0.13 2.40 16 13 C -0.54 -31.04 9.11 25.60 0.23 -30.81 16 14 H 0.08 4.02 7.74 -2.91 -0.02 3.99 16 15 C -0.01 -0.57 5.46 84.66 0.46 -0.10 16 16 N -0.94 -60.18 13.29 21.45 0.28 -59.89 16 17 Si 0.98 44.57 29.54 68.60 2.03 46.59 16 18 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 C 0.04 0.83 4.85 86.33 0.42 1.25 16 22 C -0.11 -1.78 5.38 30.65 0.16 -1.62 16 23 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 1.00 8.12 -2.39 -0.02 0.98 16 30 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.80 8.08 -2.39 -0.02 0.78 16 32 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.05 1.53 6.21 -2.39 -0.01 1.52 16 35 H 0.42 7.83 8.47 -92.71 -0.79 7.05 16 36 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 37 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 38 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 39 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 40 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 41 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.07 1.52 5.81 -2.39 -0.01 1.51 16 43 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -76.51 349.05 -0.04 -76.55 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.16 Total: 12.53 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 4.42 Total: -9.91 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -6.59 Total: -95.88 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.05 Total: -29.88 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -76.51 -0.04 -76.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330886111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.224 kcal (2) G-P(sol) polarization free energy of solvation -76.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds