Wall clock time and date at job start Mon Mar 30 2020 01:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99778 * 2 1 3 5 5 H 1.08002 * 119.99761 * 240.00657 * 4 2 1 6 6 C 1.37876 * 119.99724 * 59.99924 * 4 2 1 7 7 N 1.31514 * 120.00074 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99758 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47234 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47290 * 120.00033 * 8 6 4 11 11 H 1.48495 * 109.47273 * 239.99836 * 8 6 4 12 12 C 1.53004 * 109.47200 * 119.99439 * 2 1 3 13 13 N 1.46499 * 109.47198 * 300.00182 * 12 2 1 14 14 C 1.34777 * 120.00065 * 179.97438 * 13 12 2 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13 18 18 H 1.09000 * 112.85185 * 26.41053 * 17 16 14 19 19 C 1.53778 * 113.61127 * 255.21582 * 17 16 14 20 20 C 1.53777 * 87.08203 * 270.88334 * 19 17 16 21 21 C 1.53779 * 113.61507 * 157.71770 * 17 16 14 22 22 C 1.52994 * 113.61842 * 203.66173 * 21 17 16 23 23 C 1.53002 * 113.61557 * 334.56857 * 21 17 16 24 24 H 1.09005 * 109.46870 * 300.00371 * 1 2 3 25 25 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 26 26 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47438 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 29 29 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 30 30 H 0.96999 * 119.99800 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47211 * 179.97438 * 12 2 1 32 32 H 1.09006 * 109.46815 * 59.99729 * 12 2 1 33 33 H 0.97000 * 120.00386 * 359.97438 * 13 12 2 34 34 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 35 35 H 1.08998 * 113.61469 * 25.43254 * 19 17 16 36 36 H 1.09007 * 113.61529 * 156.33812 * 19 17 16 37 37 H 1.09004 * 113.61512 * 89.11507 * 20 19 17 38 38 H 1.09004 * 113.61739 * 219.93246 * 20 19 17 39 39 H 1.08999 * 109.47163 * 59.99644 * 22 21 17 40 40 H 1.08994 * 109.47595 * 180.02562 * 22 21 17 41 41 H 1.09007 * 109.47336 * 300.00284 * 22 21 17 42 42 H 1.09000 * 109.46733 * 59.99570 * 23 21 17 43 43 H 1.08999 * 109.46954 * 179.97438 * 23 21 17 44 44 H 1.09003 * 109.46907 * 299.99994 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0078 9 1 3.1456 -2.2878 -3.6036 10 1 1.1662 -1.5868 -4.8160 11 1 3.1466 -0.1875 -4.8164 12 6 2.0400 -0.7211 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8769 -0.4911 3.6696 15 8 2.5759 -1.4797 3.7812 16 7 1.4272 0.1440 4.7700 17 6 1.7857 -0.3532 6.1006 18 1 2.7268 -0.9032 6.1075 19 6 0.6379 -1.0872 6.8137 20 6 0.2195 0.2803 7.3791 21 6 1.6849 0.7128 7.2043 22 6 2.5606 0.4174 8.4236 23 6 1.8440 2.1449 6.6897 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 0.7090 1.1613 -3.4844 31 1 3.1300 -0.7215 1.2491 32 1 1.6766 -1.7488 1.2494 33 1 0.9943 0.7584 2.3565 34 1 0.8698 0.9328 4.6809 35 1 -0.0939 -1.5202 6.1318 36 1 0.9756 -1.7898 7.5757 37 1 -0.4754 0.8235 6.7386 38 1 -0.1049 0.2422 8.4190 39 1 3.6052 0.3649 8.1165 40 1 2.4376 1.2113 9.1603 41 1 2.2628 -0.5347 8.8628 42 1 1.0629 2.3575 5.9598 43 1 1.7611 2.8419 7.5236 44 1 2.8209 2.2554 6.2190 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332036932.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:18 Heat of formation + Delta-G solvation = -26.395707 kcal Electronic energy + Delta-G solvation = -21293.889928 eV Core-core repulsion = 18246.448828 eV Total energy + Delta-G solvation = -3047.441100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.54744 -38.77319 -36.30912 -33.38508 -32.90444 -30.88223 -30.46023 -27.61713 -25.86910 -25.70007 -25.26166 -24.18858 -22.56624 -20.58159 -18.83393 -18.59956 -17.86995 -15.96863 -15.78021 -15.19954 -14.89620 -14.73636 -14.53604 -14.31748 -13.54365 -13.49757 -13.32166 -12.85368 -12.79450 -12.45686 -12.30637 -12.15158 -11.69174 -11.56018 -11.31633 -11.18197 -10.94699 -10.85729 -10.63991 -10.38919 -10.32834 -10.19106 -10.15576 -9.73262 -9.60583 -9.28041 -8.86835 -8.75793 -8.39643 -8.15381 -6.00344 -4.10010 3.09673 3.28628 3.37230 3.42581 3.65455 4.21847 4.40356 4.44708 4.62152 4.78432 4.82932 5.02639 5.26575 5.32889 5.41756 5.47327 5.59366 5.64287 5.70249 5.79671 5.85994 5.91532 6.00238 6.16047 6.18620 6.28130 6.39861 6.53789 6.79857 6.83341 6.85311 6.94627 7.05876 7.13594 7.35039 7.46235 7.58343 7.72101 8.03518 8.15015 8.40784 8.53299 8.90302 9.09940 9.55721 11.01128 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042428 B = 0.003654 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.790463 B = 7660.055426 C = 7820.191804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.055 3.945 3 C -0.129 4.129 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.151 3.849 13 N -0.733 5.733 14 C 0.699 3.301 15 O -0.599 6.599 16 N -0.734 5.734 17 C 0.153 3.847 18 H 0.098 0.902 19 C -0.156 4.156 20 C -0.132 4.132 21 C -0.097 4.097 22 C -0.125 4.125 23 C -0.135 4.135 24 H 0.005 0.995 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.005 0.995 30 H 0.259 0.741 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.393 0.607 34 H 0.393 0.607 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.764 3.298 18.539 18.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.028 3.972 13 N -0.387 5.387 14 C 0.399 3.601 15 O -0.478 6.478 16 N -0.389 5.389 17 C 0.046 3.954 18 H 0.116 0.884 19 C -0.195 4.195 20 C -0.170 4.170 21 C -0.098 4.098 22 C -0.183 4.183 23 C -0.193 4.193 24 H 0.024 0.976 25 H 0.103 0.897 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.103 0.897 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.227 0.773 34 H 0.227 0.773 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.180 2.477 18.429 18.632 hybrid contribution -0.299 0.312 -0.956 1.050 sum -1.479 2.789 17.472 17.755 Atomic orbital electron populations 1.21813 0.97791 0.99129 0.99954 1.18373 0.92790 0.92787 0.90595 1.21812 0.98561 0.98357 0.99958 1.21036 1.31303 1.12048 0.89865 0.92351 1.24881 0.94896 0.94939 0.98852 1.69817 1.36827 1.22814 1.23057 0.86517 0.78626 0.79769 0.82984 1.19734 1.21096 1.21088 1.21574 0.97856 0.95399 0.82399 1.45501 1.55657 1.32995 1.04596 1.16069 0.80403 0.82983 0.80664 1.90876 1.43169 1.27702 1.86051 1.44813 1.56889 1.33074 1.04168 1.21670 0.98502 0.94681 0.80557 0.88442 1.23378 0.99396 0.96635 1.00128 1.23067 0.95561 0.97143 1.01190 1.22241 0.96286 0.95311 0.95917 1.21545 0.99252 1.01669 0.95793 1.21675 1.02086 0.94808 1.00701 0.97588 0.89673 0.95478 0.95470 0.89682 0.97574 0.93113 0.92989 0.93001 0.77276 0.77282 0.91054 0.89530 0.90259 0.91439 0.92055 0.92158 0.92167 0.92651 0.92503 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.08 37.16 0.30 -2.63 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.50 -13.32 8.01 -34.44 -0.28 -13.60 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.70 9.35 55.43 0.52 -23.19 16 8 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 C 0.15 3.29 4.50 -4.04 -0.02 3.28 16 13 N -0.73 -13.45 4.96 -65.22 -0.32 -13.77 16 14 C 0.70 12.75 8.57 -86.92 -0.74 12.01 16 15 O -0.60 -13.34 15.98 5.28 0.08 -13.25 16 16 N -0.73 -9.94 4.82 -57.88 -0.28 -10.22 16 17 C 0.15 1.85 3.74 -67.12 -0.25 1.60 16 18 H 0.10 1.39 7.49 -51.93 -0.39 1.00 16 19 C -0.16 -1.64 7.53 -25.92 -0.20 -1.84 16 20 C -0.13 -1.14 7.09 -25.92 -0.18 -1.32 16 21 C -0.10 -0.87 1.36 -153.70 -0.21 -1.08 16 22 C -0.13 -0.97 9.07 37.15 0.34 -0.64 16 23 C -0.14 -1.17 8.58 37.16 0.32 -0.85 16 24 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 25 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 29 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 30 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.39 6.45 6.18 -40.82 -0.25 6.20 16 34 H 0.39 4.39 7.09 -40.82 -0.29 4.10 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.81 7.65 -51.92 -0.40 0.41 16 37 H 0.08 0.67 7.96 -51.93 -0.41 0.26 16 38 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.44 7.34 -51.92 -0.38 0.06 16 42 H 0.05 0.46 6.58 -51.93 -0.34 0.11 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 339.81 15.07 5.12 5.12 Total: -1.00 -29.10 339.81 -8.26 -37.36 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -7.57 Total: 6.97 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -0.79 Total: -4.85 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.08 Total: -47.18 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.08 Total: -13.25 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.10 -8.26 -37.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332036932.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.968 kcal (2) G-P(sol) polarization free energy of solvation -29.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds