Wall clock time and date at job start Mon Mar 30 2020 01:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99778 * 2 1 3 5 5 H 1.08002 * 119.99761 * 240.00657 * 4 2 1 6 6 C 1.37876 * 119.99724 * 59.99924 * 4 2 1 7 7 N 1.31514 * 120.00074 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99758 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47234 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47290 * 120.00033 * 8 6 4 11 11 H 1.48495 * 109.47273 * 239.99836 * 8 6 4 12 12 C 1.53004 * 109.47200 * 119.99439 * 2 1 3 13 13 N 1.46499 * 109.47198 * 300.00182 * 12 2 1 14 14 C 1.34777 * 120.00065 * 179.97438 * 13 12 2 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13 18 18 H 1.09000 * 112.85185 * 26.41053 * 17 16 14 19 19 C 1.53778 * 113.61127 * 255.21582 * 17 16 14 20 20 C 1.53777 * 87.08203 * 270.88334 * 19 17 16 21 21 C 1.53779 * 113.61507 * 157.71770 * 17 16 14 22 22 C 1.52994 * 113.61842 * 203.66173 * 21 17 16 23 23 C 1.53002 * 113.61557 * 334.56857 * 21 17 16 24 24 H 1.09005 * 109.46870 * 300.00371 * 1 2 3 25 25 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 26 26 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47438 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 29 29 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 30 30 H 0.96999 * 119.99800 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.47211 * 179.97438 * 12 2 1 32 32 H 1.09006 * 109.46815 * 59.99729 * 12 2 1 33 33 H 0.97000 * 120.00386 * 359.97438 * 13 12 2 34 34 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 35 35 H 1.08998 * 113.61469 * 25.43254 * 19 17 16 36 36 H 1.09007 * 113.61529 * 156.33812 * 19 17 16 37 37 H 1.09004 * 113.61512 * 89.11507 * 20 19 17 38 38 H 1.09004 * 113.61739 * 219.93246 * 20 19 17 39 39 H 1.08999 * 109.47163 * 59.99644 * 22 21 17 40 40 H 1.08994 * 109.47595 * 180.02562 * 22 21 17 41 41 H 1.09007 * 109.47336 * 300.00284 * 22 21 17 42 42 H 1.09000 * 109.46733 * 59.99570 * 23 21 17 43 43 H 1.08999 * 109.46954 * 179.97438 * 23 21 17 44 44 H 1.09003 * 109.46907 * 299.99994 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0078 9 1 3.1456 -2.2878 -3.6036 10 1 1.1662 -1.5868 -4.8160 11 1 3.1466 -0.1875 -4.8164 12 6 2.0400 -0.7211 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8769 -0.4911 3.6696 15 8 2.5759 -1.4797 3.7812 16 7 1.4272 0.1440 4.7700 17 6 1.7857 -0.3532 6.1006 18 1 2.7268 -0.9032 6.1075 19 6 0.6379 -1.0872 6.8137 20 6 0.2195 0.2803 7.3791 21 6 1.6849 0.7128 7.2043 22 6 2.5606 0.4174 8.4236 23 6 1.8440 2.1449 6.6897 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 0.7090 1.1613 -3.4844 31 1 3.1300 -0.7215 1.2491 32 1 1.6766 -1.7488 1.2494 33 1 0.9943 0.7584 2.3565 34 1 0.8698 0.9328 4.6809 35 1 -0.0939 -1.5202 6.1318 36 1 0.9756 -1.7898 7.5757 37 1 -0.4754 0.8235 6.7386 38 1 -0.1049 0.2422 8.4190 39 1 3.6052 0.3649 8.1165 40 1 2.4376 1.2113 9.1603 41 1 2.2628 -0.5347 8.8628 42 1 1.0629 2.3575 5.9598 43 1 1.7611 2.8419 7.5236 44 1 2.8209 2.2554 6.2190 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332036932.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:17 Heat of formation + Delta-G solvation = -43.557400 kcal Electronic energy + Delta-G solvation = -21294.634115 eV Core-core repulsion = 18246.448828 eV Total energy + Delta-G solvation = -3048.185287 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.62510 -40.08255 -38.08523 -35.03012 -34.32768 -32.52397 -31.39542 -28.28100 -27.55615 -27.51009 -26.97392 -25.47349 -23.41658 -21.99517 -20.60750 -19.84015 -19.05964 -17.78001 -17.03880 -16.67498 -16.46816 -15.91304 -15.80030 -15.32459 -14.99130 -14.78799 -14.59640 -14.39542 -14.01080 -13.99413 -13.21655 -13.10915 -13.10045 -12.97772 -12.70971 -12.56490 -12.38694 -12.35061 -12.22630 -12.13439 -11.67949 -11.47995 -11.36444 -11.15362 -11.14225 -10.96856 -10.69239 -10.40041 -10.20429 -9.62346 -8.01927 -6.17379 1.41819 1.45866 1.55390 1.78892 2.19456 2.46854 3.21723 3.37418 3.45213 3.67687 3.94648 3.98612 4.31056 4.42192 4.53839 4.60945 4.65527 4.72018 4.78903 4.85502 4.93586 5.00908 5.01685 5.06093 5.06668 5.11226 5.15257 5.20753 5.21694 5.22278 5.39024 5.44337 5.48388 5.62851 5.67911 5.68054 5.74065 6.10084 6.15813 6.22608 6.44497 6.86869 7.17332 7.50326 7.65354 8.97238 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042428 B = 0.003654 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.790463 B = 7660.055426 C = 7820.191804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.052 3.948 3 C -0.118 4.118 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.946 3.054 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.168 3.832 13 N -0.726 5.726 14 C 0.697 3.303 15 O -0.642 6.642 16 N -0.713 5.713 17 C 0.133 3.867 18 H 0.070 0.930 19 C -0.156 4.156 20 C -0.120 4.120 21 C -0.084 4.084 22 C -0.126 4.126 23 C -0.137 4.137 24 H 0.036 0.964 25 H 0.063 0.937 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.260 0.740 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.405 0.595 34 H 0.408 0.592 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.656 4.455 20.184 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.051 3.949 3 C -0.176 4.176 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.044 3.956 13 N -0.381 5.381 14 C 0.397 3.603 15 O -0.525 6.525 16 N -0.369 5.369 17 C 0.026 3.974 18 H 0.088 0.912 19 C -0.195 4.195 20 C -0.157 4.157 21 C -0.085 4.085 22 C -0.183 4.183 23 C -0.194 4.194 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.241 0.759 34 H 0.245 0.755 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.105 3.681 20.111 20.553 hybrid contribution -0.008 -0.059 -1.416 1.417 sum -2.112 3.622 18.695 19.159 Atomic orbital electron populations 1.21650 0.97050 0.98596 1.00336 1.18368 0.93304 0.93083 0.90163 1.21648 0.97863 0.97776 1.00338 1.21301 1.31661 1.12139 0.91584 0.93807 1.25444 0.95145 0.95608 1.00936 1.69912 1.37032 1.23278 1.23531 0.85700 0.78130 0.78727 0.80203 1.20069 1.20693 1.20670 1.21114 0.96622 0.94626 0.83266 1.45188 1.55866 1.33177 1.03860 1.16202 0.80078 0.82659 0.81343 1.90849 1.45154 1.29780 1.86683 1.44621 1.55942 1.32800 1.03524 1.21960 0.98112 0.96773 0.80521 0.91166 1.23388 0.98170 0.97942 0.99955 1.23027 0.95127 0.95218 1.02312 1.22214 0.96962 0.94561 0.94781 1.21580 0.98526 1.02676 0.95531 1.21703 1.01511 0.94741 1.01455 0.94497 0.91854 0.96422 0.96401 0.91872 0.94477 0.93030 0.94768 0.94800 0.75854 0.75507 0.92604 0.88458 0.89700 0.89550 0.92813 0.90385 0.91626 0.92154 0.90758 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.08 71.98 0.58 -4.72 16 2 C 0.05 2.42 0.50 -52.93 -0.03 2.39 16 3 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 4 C -0.53 -28.32 8.01 25.60 0.21 -28.12 16 5 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 6 C 0.03 1.50 5.15 84.65 0.44 1.94 16 7 N -0.90 -48.01 9.35 21.45 0.20 -47.81 16 8 Si 0.95 42.93 29.54 68.60 2.03 44.96 16 9 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 12 C 0.17 7.42 4.50 86.38 0.39 7.81 16 13 N -0.73 -26.04 4.96 -478.52 -2.37 -28.41 16 14 C 0.70 25.24 8.57 179.05 1.53 26.77 16 15 O -0.64 -29.17 15.98 -4.01 -0.06 -29.24 16 16 N -0.71 -18.48 4.82 -455.30 -2.20 -20.68 16 17 C 0.13 3.09 3.74 45.52 0.17 3.26 16 18 H 0.07 2.04 7.49 -2.39 -0.02 2.02 16 19 C -0.16 -3.03 7.53 31.12 0.23 -2.79 16 20 C -0.12 -1.69 7.09 31.12 0.22 -1.47 16 21 C -0.08 -1.33 1.36 -51.66 -0.07 -1.40 16 22 C -0.13 -1.66 9.07 71.98 0.65 -1.01 16 23 C -0.14 -2.00 8.58 71.98 0.62 -1.38 16 24 H 0.04 1.37 6.86 -2.38 -0.02 1.36 16 25 H 0.06 3.14 6.07 -2.38 -0.01 3.12 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 3.13 6.07 -2.38 -0.01 3.11 16 29 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 30 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 31 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.40 12.43 6.18 -92.71 -0.57 11.86 16 34 H 0.41 8.19 7.09 -92.71 -0.66 7.53 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.10 1.67 7.65 -2.38 -0.02 1.65 16 37 H 0.08 1.13 7.96 -2.38 -0.02 1.12 16 38 H 0.09 0.96 8.10 -2.39 -0.02 0.94 16 39 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.80 7.34 -2.38 -0.02 0.78 16 42 H 0.06 0.81 6.58 -2.39 -0.02 0.79 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -63.24 339.81 2.87 -60.36 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: -0.25 Total: 24.23 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 5.53 Total: -3.42 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -4.37 Total: -96.90 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.06 Total: -29.24 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -63.24 2.87 -60.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332036932.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.808 kcal (2) G-P(sol) polarization free energy of solvation -63.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds