Wall clock time and date at job start Mon Mar 30 2020 01:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54198 * 1 3 3 C 1.53157 * 107.73217 * 2 1 4 4 C 1.52691 * 107.96603 * 118.29196 * 2 1 3 5 5 N 1.46879 * 109.69558 * 171.80923 * 4 2 1 6 6 C 1.46903 * 110.98409 * 171.02007 * 5 4 2 7 7 C 1.50703 * 109.47279 * 293.65198 * 6 5 4 8 8 O 1.21295 * 120.00030 * 353.76745 * 7 6 5 9 9 N 1.34773 * 120.00330 * 173.76450 * 7 6 5 10 10 C 1.37093 * 120.00545 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99584 * 359.97438 * 10 9 7 12 12 C 1.38944 * 120.00527 * 180.02562 * 10 9 7 13 13 N 1.31420 * 119.99766 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00419 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46847 * 59.99847 * 14 12 10 16 16 H 1.48497 * 109.47136 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47090 * 299.99978 * 14 12 10 18 18 C 1.46873 * 109.48578 * 293.87006 * 5 4 2 19 19 C 1.52706 * 109.65371 * 66.21733 * 18 5 4 20 20 C 1.54184 * 107.98153 * 188.00786 * 19 18 5 21 21 C 1.53151 * 109.59475 * 70.90552 * 19 18 5 22 22 C 1.51983 * 112.04643 * 307.27579 * 19 18 5 23 23 H 1.09003 * 109.47212 * 301.71467 * 1 2 3 24 24 H 1.09005 * 109.47144 * 61.70990 * 1 2 3 25 25 H 1.09000 * 109.47893 * 181.71069 * 1 2 3 26 26 H 1.09002 * 109.47583 * 177.23281 * 3 2 1 27 27 H 1.09003 * 109.47153 * 297.23689 * 3 2 1 28 28 H 1.09007 * 109.47038 * 57.23123 * 3 2 1 29 29 H 1.09079 * 109.59427 * 291.85066 * 4 2 1 30 30 H 1.09070 * 109.61243 * 51.72253 * 4 2 1 31 31 H 1.09003 * 109.46810 * 53.65088 * 6 5 4 32 32 H 1.08995 * 109.47228 * 173.64767 * 6 5 4 33 33 H 0.97004 * 119.99611 * 359.97438 * 9 7 6 34 34 H 0.96999 * 120.00028 * 180.02562 * 13 12 10 35 35 H 1.09066 * 109.36087 * 306.01051 * 18 5 4 36 36 H 1.09075 * 109.34754 * 186.41785 * 18 5 4 37 37 H 1.08996 * 109.46882 * 181.57305 * 20 19 18 38 38 H 1.08993 * 109.47608 * 301.57763 * 20 19 18 39 39 H 1.09000 * 109.47041 * 61.58227 * 20 19 18 40 40 H 1.09002 * 109.47321 * 295.73219 * 21 19 18 41 41 H 1.08997 * 109.47462 * 55.73294 * 21 19 18 42 42 H 1.08997 * 109.47116 * 175.73384 * 21 19 18 43 43 H 1.10138 * 108.69983 * 279.01964 * 22 19 18 44 44 H 1.10142 * 108.73065 * 163.68606 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5420 0.0000 0.0000 3 6 2.0084 1.4588 0.0000 4 6 2.0130 -0.6884 1.2790 5 7 3.4677 -0.8850 1.2284 6 6 3.9812 -1.3482 2.5245 7 6 3.8084 -0.2591 3.5517 8 8 3.4123 0.8363 3.2134 9 7 4.0937 -0.5022 4.8462 10 6 3.9359 0.4883 5.7808 11 1 3.5834 1.4637 5.4795 12 6 4.2306 0.2378 7.1153 13 7 4.6602 -0.9489 7.4818 14 14 4.0164 1.5878 8.3886 15 1 2.5978 2.0266 8.4107 16 1 4.3946 1.0696 9.7278 17 1 4.8856 2.7400 8.0395 18 6 3.7964 -1.8390 0.1612 19 6 3.4525 -1.2297 -1.1962 20 6 3.6191 -2.3270 -2.2664 21 6 4.4424 -0.1071 -1.5208 22 6 2.0204 -0.7236 -1.2480 23 1 -0.3634 0.5402 0.8742 24 1 -0.3634 0.4871 -0.9050 25 1 -0.3635 -1.0272 0.0307 26 1 3.0968 1.4923 0.0496 27 1 1.6711 1.9482 -0.9137 28 1 1.5893 1.9743 0.8642 29 1 1.7620 -0.0694 2.1413 30 1 1.5205 -1.6567 1.3762 31 1 3.4295 -2.2344 2.8382 32 1 5.0390 -1.5935 2.4295 33 1 4.4100 -1.3784 5.1168 34 1 4.8655 -1.1239 8.4135 35 1 3.2235 -2.7556 0.3066 36 1 4.8615 -2.0707 0.1991 37 1 3.4061 -1.9099 -3.2506 38 1 4.6418 -2.7034 -2.2448 39 1 2.9270 -3.1435 -2.0604 40 1 4.3294 0.6982 -0.7950 41 1 5.4598 -0.4957 -1.4769 42 1 4.2425 0.2753 -2.5217 43 1 1.3510 -1.5769 -1.4400 44 1 1.9152 -0.0475 -2.1111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334677231.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:55 Heat of formation + Delta-G solvation = -53.028799 kcal Electronic energy + Delta-G solvation = -21982.359320 eV Core-core repulsion = 18933.763323 eV Total energy + Delta-G solvation = -3048.595997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.92479 -37.92403 -34.79333 -34.63666 -33.65211 -31.16414 -27.77550 -27.57003 -26.52116 -26.46444 -26.12455 -24.64327 -22.18851 -19.78834 -19.03177 -17.82266 -17.75163 -15.97986 -15.39182 -15.06562 -14.59384 -14.35314 -14.28561 -13.92013 -13.86477 -13.56139 -13.17915 -13.08591 -12.47571 -12.23843 -12.04166 -11.88148 -11.82745 -11.55523 -11.42964 -11.40818 -11.33493 -11.18004 -10.89595 -10.65466 -10.43809 -10.40829 -10.23064 -10.17587 -9.98317 -9.81721 -9.40603 -8.32372 -7.91386 -7.77082 -6.37342 -3.77827 3.22645 3.27930 3.32361 3.97683 4.06258 4.28870 4.68081 4.87379 4.94361 5.07779 5.22488 5.29439 5.30940 5.38315 5.51261 5.61571 5.67580 5.73400 5.76258 5.80196 5.84737 5.91205 5.93903 5.97432 5.99896 6.07051 6.10122 6.18371 6.24441 6.31440 6.31854 6.38356 6.42605 6.50719 6.60745 6.73224 7.01296 7.43470 7.50513 7.59025 8.11355 8.67507 9.23054 9.60319 10.12729 10.80583 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029590 B = 0.004599 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.037753 B = 6087.302792 C = 6514.855380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 C -0.129 4.129 4 C 0.064 3.936 5 N -0.501 5.501 6 C 0.043 3.957 7 C 0.445 3.555 8 O -0.572 6.572 9 N -0.567 5.567 10 C -0.297 4.297 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.904 5.904 14 Si 0.929 3.071 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.062 3.938 19 C -0.052 4.052 20 C -0.144 4.144 21 C -0.137 4.137 22 C -0.091 4.091 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.019 0.981 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.391 0.609 34 H 0.271 0.729 35 H 0.028 0.972 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.044 0.956 43 H 0.050 0.950 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.418 -3.731 -16.074 16.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.051 4.051 3 C -0.186 4.186 4 C -0.064 4.064 5 N -0.224 5.224 6 C -0.088 4.088 7 C 0.230 3.770 8 O -0.456 6.456 9 N -0.204 5.204 10 C -0.426 4.426 11 H 0.120 0.880 12 C -0.180 4.180 13 N -0.546 5.546 14 Si 0.757 3.243 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.066 4.066 19 C -0.052 4.052 20 C -0.202 4.202 21 C -0.194 4.194 22 C -0.128 4.128 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.114 0.886 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.224 0.776 34 H 0.081 0.919 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.403 -2.597 -16.211 16.767 hybrid contribution -0.240 -0.884 1.104 1.434 sum -3.643 -3.481 -15.107 15.926 Atomic orbital electron populations 1.22198 0.95277 1.01107 1.01618 1.20356 0.94170 0.96509 0.94045 1.21860 1.03002 0.93736 1.00014 1.22239 0.86866 0.98457 0.98854 1.62017 1.13224 1.44294 1.02863 1.21888 1.00813 0.96196 0.89918 1.19753 0.84648 0.89463 0.83109 1.90506 1.50376 1.24767 1.79942 1.41879 1.58674 1.14399 1.05491 1.19631 1.41629 0.94458 0.86925 0.88026 1.25236 0.97208 0.97401 0.98112 1.69609 1.45426 1.21100 1.18416 0.85939 0.78889 0.80442 0.79067 1.19985 1.21039 1.19934 1.22183 1.00411 0.92841 0.91200 1.20377 0.95386 0.95535 0.93922 1.22200 1.01416 0.98122 0.98432 1.21953 0.97673 0.98980 1.00840 1.21382 0.94745 0.99417 0.97295 0.92431 0.92937 0.93310 0.90889 0.94420 0.92682 0.88636 0.96257 0.93857 0.89433 0.77590 0.91916 0.95418 0.91110 0.92758 0.92716 0.93095 0.90593 0.93307 0.93716 0.93119 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.13 37.78 0.31 -1.48 16 2 C -0.05 -0.71 0.76 -154.48 -0.12 -0.82 16 3 C -0.13 -1.95 8.07 37.24 0.30 -1.65 16 4 C 0.06 1.06 3.70 -3.99 -0.01 1.05 16 5 N -0.50 -8.41 3.96 -236.36 -0.94 -9.34 16 6 C 0.04 0.79 5.43 -4.97 -0.03 0.76 16 7 C 0.44 10.49 7.27 -10.99 -0.08 10.41 16 8 O -0.57 -15.16 14.32 5.54 0.08 -15.08 16 9 N -0.57 -14.44 5.29 -10.96 -0.06 -14.50 16 10 C -0.30 -8.29 9.68 -14.94 -0.14 -8.44 16 11 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.79 13.05 55.50 0.72 -24.07 16 14 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 15 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 C 0.06 0.84 4.06 -3.99 -0.02 0.83 16 19 C -0.05 -0.62 0.76 -154.48 -0.12 -0.73 16 20 C -0.14 -1.40 8.15 37.78 0.31 -1.09 16 21 C -0.14 -1.67 8.11 37.24 0.30 -1.37 16 22 C -0.09 -1.10 3.63 -27.76 -0.10 -1.20 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.56 8.10 -51.93 -0.42 0.14 16 26 H 0.07 1.22 5.42 -51.93 -0.28 0.94 16 27 H 0.04 0.49 8.08 -51.93 -0.42 0.07 16 28 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 29 H 0.10 1.94 5.99 -51.88 -0.31 1.63 16 30 H 0.02 0.31 7.96 -51.89 -0.41 -0.10 16 31 H 0.04 0.74 8.12 -51.93 -0.42 0.32 16 32 H 0.09 1.46 7.97 -51.93 -0.41 1.05 16 33 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 34 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.03 0.37 7.96 -51.89 -0.41 -0.05 16 36 H 0.07 0.92 7.92 -51.89 -0.41 0.51 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.48 8.06 -51.93 -0.42 0.06 16 40 H 0.08 1.10 5.39 -51.93 -0.28 0.82 16 41 H 0.05 0.57 8.12 -51.93 -0.42 0.14 16 42 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.58 7.60 -51.28 -0.39 0.19 16 44 H 0.06 0.65 7.90 -51.28 -0.41 0.24 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -29.43 337.52 -7.41 -36.85 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -7.79 Total: 8.12 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 0.50 Total: -3.25 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.27 Total: -47.91 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.08 Total: -15.08 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.43 -7.41 -36.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334677231.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.180 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds