Wall clock time and date at job start Mon Mar 30 2020 01:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54198 * 1 3 3 C 1.53157 * 107.73217 * 2 1 4 4 C 1.52691 * 107.96603 * 118.29196 * 2 1 3 5 5 N 1.46879 * 109.69558 * 171.80923 * 4 2 1 6 6 C 1.46903 * 110.98409 * 171.02007 * 5 4 2 7 7 C 1.50703 * 109.47279 * 293.65198 * 6 5 4 8 8 O 1.21295 * 120.00030 * 353.76745 * 7 6 5 9 9 N 1.34773 * 120.00330 * 173.76450 * 7 6 5 10 10 C 1.37093 * 120.00545 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99584 * 359.97438 * 10 9 7 12 12 C 1.38944 * 120.00527 * 180.02562 * 10 9 7 13 13 N 1.31420 * 119.99766 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00419 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46847 * 59.99847 * 14 12 10 16 16 H 1.48497 * 109.47136 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47090 * 299.99978 * 14 12 10 18 18 C 1.46873 * 109.48578 * 293.87006 * 5 4 2 19 19 C 1.52706 * 109.65371 * 66.21733 * 18 5 4 20 20 C 1.54184 * 107.98153 * 188.00786 * 19 18 5 21 21 C 1.53151 * 109.59475 * 70.90552 * 19 18 5 22 22 C 1.51983 * 112.04643 * 307.27579 * 19 18 5 23 23 H 1.09003 * 109.47212 * 301.71467 * 1 2 3 24 24 H 1.09005 * 109.47144 * 61.70990 * 1 2 3 25 25 H 1.09000 * 109.47893 * 181.71069 * 1 2 3 26 26 H 1.09002 * 109.47583 * 177.23281 * 3 2 1 27 27 H 1.09003 * 109.47153 * 297.23689 * 3 2 1 28 28 H 1.09007 * 109.47038 * 57.23123 * 3 2 1 29 29 H 1.09079 * 109.59427 * 291.85066 * 4 2 1 30 30 H 1.09070 * 109.61243 * 51.72253 * 4 2 1 31 31 H 1.09003 * 109.46810 * 53.65088 * 6 5 4 32 32 H 1.08995 * 109.47228 * 173.64767 * 6 5 4 33 33 H 0.97004 * 119.99611 * 359.97438 * 9 7 6 34 34 H 0.96999 * 120.00028 * 180.02562 * 13 12 10 35 35 H 1.09066 * 109.36087 * 306.01051 * 18 5 4 36 36 H 1.09075 * 109.34754 * 186.41785 * 18 5 4 37 37 H 1.08996 * 109.46882 * 181.57305 * 20 19 18 38 38 H 1.08993 * 109.47608 * 301.57763 * 20 19 18 39 39 H 1.09000 * 109.47041 * 61.58227 * 20 19 18 40 40 H 1.09002 * 109.47321 * 295.73219 * 21 19 18 41 41 H 1.08997 * 109.47462 * 55.73294 * 21 19 18 42 42 H 1.08997 * 109.47116 * 175.73384 * 21 19 18 43 43 H 1.10138 * 108.69983 * 279.01964 * 22 19 18 44 44 H 1.10142 * 108.73065 * 163.68606 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5420 0.0000 0.0000 3 6 2.0084 1.4588 0.0000 4 6 2.0130 -0.6884 1.2790 5 7 3.4677 -0.8850 1.2284 6 6 3.9812 -1.3482 2.5245 7 6 3.8084 -0.2591 3.5517 8 8 3.4123 0.8363 3.2134 9 7 4.0937 -0.5022 4.8462 10 6 3.9359 0.4883 5.7808 11 1 3.5834 1.4637 5.4795 12 6 4.2306 0.2378 7.1153 13 7 4.6602 -0.9489 7.4818 14 14 4.0164 1.5878 8.3886 15 1 2.5978 2.0266 8.4107 16 1 4.3946 1.0696 9.7278 17 1 4.8856 2.7400 8.0395 18 6 3.7964 -1.8390 0.1612 19 6 3.4525 -1.2297 -1.1962 20 6 3.6191 -2.3270 -2.2664 21 6 4.4424 -0.1071 -1.5208 22 6 2.0204 -0.7236 -1.2480 23 1 -0.3634 0.5402 0.8742 24 1 -0.3634 0.4871 -0.9050 25 1 -0.3635 -1.0272 0.0307 26 1 3.0968 1.4923 0.0496 27 1 1.6711 1.9482 -0.9137 28 1 1.5893 1.9743 0.8642 29 1 1.7620 -0.0694 2.1413 30 1 1.5205 -1.6567 1.3762 31 1 3.4295 -2.2344 2.8382 32 1 5.0390 -1.5935 2.4295 33 1 4.4100 -1.3784 5.1168 34 1 4.8655 -1.1239 8.4135 35 1 3.2235 -2.7556 0.3066 36 1 4.8615 -2.0707 0.1991 37 1 3.4061 -1.9099 -3.2506 38 1 4.6418 -2.7034 -2.2448 39 1 2.9270 -3.1435 -2.0604 40 1 4.3294 0.6982 -0.7950 41 1 5.4598 -0.4957 -1.4769 42 1 4.2425 0.2753 -2.5217 43 1 1.3510 -1.5769 -1.4400 44 1 1.9152 -0.0475 -2.1111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334677231.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:55 Heat of formation + Delta-G solvation = -71.757044 kcal Electronic energy + Delta-G solvation = -21983.171438 eV Core-core repulsion = 18933.763323 eV Total energy + Delta-G solvation = -3049.408115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.15471 -39.71256 -36.20101 -35.83662 -35.43892 -33.22444 -29.33021 -28.58566 -27.51068 -27.41775 -27.28830 -26.54819 -23.57150 -21.02375 -20.70203 -19.82333 -18.89884 -17.69645 -16.71622 -16.53429 -16.34464 -15.71259 -15.49867 -15.31683 -15.21689 -15.10034 -14.50426 -14.10856 -13.99103 -13.48313 -13.44595 -13.18281 -12.91157 -12.88971 -12.82138 -12.62500 -12.44820 -12.41902 -12.41349 -12.31841 -12.12433 -11.69959 -11.51709 -11.41401 -11.29187 -11.08920 -10.86270 -10.18796 -9.96848 -9.12982 -8.44623 -5.92857 1.39779 1.40954 1.51956 2.09483 2.29323 2.81896 3.22361 3.41139 3.67652 3.91618 3.95152 4.10474 4.21068 4.32728 4.34979 4.42651 4.47351 4.55099 4.69547 4.72061 4.78926 4.82390 4.84742 4.91180 4.95100 5.00208 5.02605 5.11156 5.13125 5.18333 5.21777 5.33583 5.40919 5.41819 5.43637 5.58687 5.61050 5.82555 5.95420 6.15845 6.29267 6.63833 7.15644 7.59828 8.16312 8.72901 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029590 B = 0.004599 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.037753 B = 6087.302792 C = 6514.855380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.049 4.049 3 C -0.123 4.123 4 C 0.068 3.932 5 N -0.515 5.515 6 C 0.054 3.946 7 C 0.443 3.557 8 O -0.606 6.606 9 N -0.578 5.578 10 C -0.330 4.330 11 H 0.078 0.922 12 C -0.013 4.013 13 N -0.923 5.923 14 Si 0.991 3.009 15 H -0.273 1.273 16 H -0.270 1.270 17 H -0.272 1.272 18 C 0.061 3.939 19 C -0.053 4.053 20 C -0.137 4.137 21 C -0.135 4.135 22 C -0.089 4.089 23 H 0.040 0.960 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.024 0.976 29 H 0.049 0.951 30 H 0.026 0.974 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.394 0.606 34 H 0.277 0.723 35 H 0.037 0.963 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.546 -4.855 -17.753 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.049 4.049 3 C -0.180 4.180 4 C -0.060 4.060 5 N -0.239 5.239 6 C -0.077 4.077 7 C 0.230 3.770 8 O -0.491 6.491 9 N -0.216 5.216 10 C -0.459 4.459 11 H 0.096 0.904 12 C -0.213 4.213 13 N -0.564 5.564 14 Si 0.815 3.185 15 H -0.198 1.198 16 H -0.195 1.195 17 H -0.198 1.198 18 C -0.067 4.067 19 C -0.053 4.053 20 C -0.194 4.194 21 C -0.192 4.192 22 C -0.127 4.127 23 H 0.059 0.941 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.125 0.875 33 H 0.228 0.772 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.527 -3.746 -17.906 18.631 hybrid contribution -0.196 -0.518 1.587 1.681 sum -3.723 -4.264 -16.319 17.273 Atomic orbital electron populations 1.22164 0.93931 1.01855 1.01865 1.20365 0.95301 0.95433 0.93838 1.21786 1.01539 0.94895 0.99757 1.22135 0.87143 0.98062 0.98682 1.62015 1.13213 1.45864 1.02759 1.21767 1.02394 0.94265 0.89306 1.20732 0.82607 0.90274 0.83357 1.90487 1.51296 1.26782 1.80542 1.41948 1.59507 1.14116 1.06032 1.19596 1.43537 0.94443 0.88345 0.90410 1.26004 0.96317 0.99651 0.99311 1.69674 1.45349 1.22292 1.19116 0.85014 0.78752 0.77748 0.76970 1.19797 1.19492 1.19764 1.22319 1.01058 0.92489 0.90804 1.20408 0.95107 0.96157 0.93621 1.22127 1.02062 0.97318 0.97933 1.21917 0.98107 0.98310 1.00855 1.21358 0.95104 1.00009 0.96201 0.94087 0.90941 0.92168 0.92830 0.92072 0.95671 0.93197 0.95604 0.92284 0.87466 0.77227 0.91403 0.94502 0.90346 0.91527 0.92119 0.92449 0.93398 0.92980 0.92143 0.91612 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.13 72.39 0.59 -2.70 16 2 C -0.05 -1.33 0.76 -52.16 -0.04 -1.37 16 3 C -0.12 -3.76 8.07 72.03 0.58 -3.18 16 4 C 0.07 2.28 3.70 86.20 0.32 2.60 16 5 N -0.51 -17.10 3.96 -901.72 -3.57 -20.67 16 6 C 0.05 1.96 5.43 85.56 0.46 2.42 16 7 C 0.44 21.59 7.27 87.66 0.64 22.23 16 8 O -0.61 -33.75 14.32 -3.08 -0.04 -33.80 16 9 N -0.58 -30.38 5.29 -306.99 -1.62 -32.00 16 10 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 11 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 12 C -0.01 -0.73 5.50 84.92 0.47 -0.27 16 13 N -0.92 -50.72 13.05 21.66 0.28 -50.44 16 14 Si 0.99 43.72 29.55 68.60 2.03 45.75 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 18 C 0.06 1.52 4.06 86.21 0.35 1.87 16 19 C -0.05 -1.11 0.76 -52.16 -0.04 -1.15 16 20 C -0.14 -2.13 8.15 72.38 0.59 -1.54 16 21 C -0.13 -3.02 8.11 72.03 0.58 -2.44 16 22 C -0.09 -1.91 3.63 29.92 0.11 -1.80 16 23 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 26 H 0.05 1.85 5.42 -2.39 -0.01 1.84 16 27 H 0.06 1.53 8.08 -2.39 -0.02 1.51 16 28 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.05 2.13 5.99 -2.35 -0.01 2.12 16 30 H 0.03 0.82 7.96 -2.35 -0.02 0.80 16 31 H 0.06 1.97 8.12 -2.39 -0.02 1.95 16 32 H 0.11 3.47 7.97 -2.39 -0.02 3.45 16 33 H 0.39 19.79 7.90 -92.71 -0.73 19.06 16 34 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 35 H 0.04 0.87 7.96 -2.35 -0.02 0.85 16 36 H 0.08 1.84 7.92 -2.35 -0.02 1.82 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.06 0.84 8.06 -2.39 -0.02 0.82 16 40 H 0.05 1.36 5.39 -2.39 -0.01 1.35 16 41 H 0.05 1.11 8.12 -2.39 -0.02 1.09 16 42 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.07 1.24 7.60 -1.78 -0.01 1.23 16 44 H 0.07 1.35 7.90 -1.78 -0.01 1.34 16 Total: -1.00 -65.42 337.52 2.74 -62.68 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.24 Total: 32.02 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 5.42 Total: -3.54 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -4.91 Total: -103.11 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.04 Total: -33.80 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -65.42 2.74 -62.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334677231.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.072 kcal (2) G-P(sol) polarization free energy of solvation -65.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds