Wall clock time and date at job start Mon Mar 30 2020 01:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 108.56664 * 2 1 4 4 C 1.53839 * 108.61555 * 117.94136 * 2 1 3 5 5 C 1.52839 * 113.06036 * 78.20386 * 4 2 1 6 6 C 1.51023 * 112.18236 * 318.06243 * 5 4 2 7 7 N 1.47420 * 106.56834 * 90.02707 * 6 5 4 8 8 C 1.34776 * 118.49255 * 100.86972 * 7 6 5 9 9 O 1.21591 * 119.99674 * 174.66720 * 8 7 6 10 10 N 1.34774 * 120.00431 * 354.66933 * 8 7 6 11 11 C 1.46505 * 120.00386 * 184.90329 * 10 8 7 12 12 C 1.52991 * 109.47133 * 179.97438 * 11 10 8 13 13 C 1.50705 * 109.47136 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99665 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00212 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00123 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.47229 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46883 * 120.00515 * 17 15 13 20 20 H 1.48501 * 109.47414 * 240.00216 * 17 15 13 21 21 C 1.40510 * 123.01213 * 280.89644 * 7 6 5 22 22 C 1.50979 * 108.63797 * 242.17377 * 2 1 3 23 23 H 1.08999 * 109.47496 * 284.49895 * 1 2 3 24 24 H 1.09004 * 109.47134 * 44.49817 * 1 2 3 25 25 H 1.08993 * 109.47209 * 164.49546 * 1 2 3 26 26 H 1.09007 * 109.46486 * 177.94121 * 3 2 1 27 27 H 1.08998 * 109.47006 * 297.93912 * 3 2 1 28 28 H 1.08993 * 109.47237 * 57.94349 * 3 2 1 29 29 H 1.08996 * 108.76720 * 317.28037 * 4 2 1 30 30 H 1.09009 * 108.76639 * 199.12700 * 4 2 1 31 31 H 1.08998 * 108.94186 * 197.36404 * 5 4 2 32 32 H 1.09006 * 108.93879 * 78.75828 * 5 4 2 33 33 H 1.09004 * 110.03270 * 330.76798 * 6 5 4 34 34 H 1.08997 * 110.12081 * 209.33201 * 6 5 4 35 35 H 0.97002 * 120.00164 * 4.89827 * 10 8 7 36 36 H 1.09002 * 109.46615 * 299.99982 * 11 10 8 37 37 H 1.09000 * 109.47145 * 59.99543 * 11 10 8 38 38 H 1.09002 * 109.47390 * 299.99550 * 12 11 10 39 39 H 1.09000 * 109.47443 * 59.99768 * 12 11 10 40 40 H 0.96996 * 120.00200 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.36088 * 179.29504 * 21 7 6 42 42 H 1.09001 * 109.35457 * 298.87073 * 21 7 6 43 43 H 1.08994 * 109.60779 * 212.15428 * 22 2 1 44 44 H 1.08997 * 109.58278 * 91.69483 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0172 1.4504 0.0000 4 6 2.0211 -0.6831 1.2880 5 6 1.9398 -2.2081 1.2252 6 6 0.6579 -2.6848 0.5846 7 7 0.9274 -2.7995 -0.8602 8 6 1.1704 -4.0215 -1.3740 9 8 1.2997 -4.1614 -2.5748 10 7 1.2700 -5.0886 -0.5567 11 6 1.6400 -6.3970 -1.1020 12 6 1.6822 -7.4272 0.0284 13 6 2.0635 -8.7730 -0.5325 14 1 2.2560 -8.8826 -1.5895 15 6 2.1665 -9.8643 0.3038 16 7 1.9315 -9.7310 1.5909 17 14 2.6384 -11.5326 -0.3915 18 1 2.8475 -11.4169 -1.8571 19 1 3.8927 -12.0001 0.2517 20 1 1.5508 -12.5071 -0.1216 21 6 0.9429 -1.6930 -1.7262 22 6 2.0125 -0.6678 -1.2652 23 1 -0.3634 0.2573 0.9949 24 1 -0.3633 0.7330 -0.7203 25 1 -0.3633 -0.9902 -0.2747 26 1 3.1065 1.4677 0.0369 27 1 1.6765 1.9481 -0.9079 28 1 1.6159 1.9685 0.8709 29 1 1.4145 -0.3337 2.1234 30 1 3.0572 -0.3942 1.4650 31 1 1.9992 -2.6075 2.2376 32 1 2.7848 -2.5840 0.6483 33 1 -0.1385 -1.9614 0.7596 34 1 0.3751 -3.6564 0.9897 35 1 1.0967 -4.9902 0.3927 36 1 0.9034 -6.7024 -1.8451 37 1 2.6223 -6.3311 -1.5698 38 1 2.4191 -7.1216 0.7712 39 1 0.7001 -7.4932 0.4966 40 1 2.0037 -10.4988 2.1792 41 1 1.1760 -2.0284 -2.7368 42 1 -0.0380 -1.2178 -1.7228 43 1 2.9531 -1.1831 -1.0709 44 1 2.1581 0.0829 -2.0419 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334983530.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:30 Heat of formation + Delta-G solvation = -19.871146 kcal Electronic energy + Delta-G solvation = -21520.804343 eV Core-core repulsion = 18473.646170 eV Total energy + Delta-G solvation = -3047.158174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.03933 -38.59540 -35.05855 -34.86567 -33.05006 -32.49170 -29.88704 -28.43631 -28.01863 -26.23414 -24.87550 -23.36967 -21.96301 -20.94192 -19.45310 -18.39706 -18.02174 -16.52169 -16.18064 -15.90183 -15.01354 -14.78012 -14.60761 -14.45978 -14.18688 -13.81200 -13.38661 -13.17240 -12.99574 -12.68067 -12.38583 -12.27275 -12.00154 -11.78000 -11.51010 -11.32848 -11.12650 -11.03368 -10.78500 -10.62784 -10.56707 -10.40288 -10.31303 -10.24975 -9.78576 -9.50686 -9.22081 -8.62039 -8.42267 -8.08432 -6.07753 -4.10038 3.09400 3.29662 3.37292 3.42967 3.57505 4.24373 4.45011 4.50784 4.57513 4.61535 4.85079 4.95209 5.15591 5.18053 5.29513 5.31970 5.33777 5.43419 5.52228 5.58035 5.58761 5.67780 5.76224 5.85419 5.88193 5.91601 6.05198 6.06730 6.13436 6.27068 6.32367 6.34617 6.43406 6.80383 6.94453 7.05911 7.24776 7.58241 7.65529 7.91795 8.27270 8.41154 8.95190 9.04196 9.54690 11.04002 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039451 B = 0.003627 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.573674 B = 7718.489195 C = 8097.706913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.064 4.064 3 C -0.142 4.142 4 C -0.103 4.103 5 C -0.140 4.140 6 C 0.096 3.904 7 N -0.621 5.621 8 C 0.694 3.306 9 O -0.597 6.597 10 N -0.738 5.738 11 C 0.138 3.862 12 C 0.013 3.987 13 C -0.519 4.519 14 H 0.060 0.940 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.114 3.886 22 C -0.125 4.125 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.085 0.915 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.393 0.607 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.261 0.739 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.417 21.705 1.010 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.064 4.064 3 C -0.199 4.199 4 C -0.140 4.140 5 C -0.179 4.179 6 C -0.026 4.026 7 N -0.358 5.358 8 C 0.395 3.605 9 O -0.476 6.476 10 N -0.393 5.393 11 C 0.016 3.984 12 C -0.024 4.024 13 C -0.558 4.558 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.011 4.011 22 C -0.164 4.164 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.103 0.897 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.228 0.772 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.111 0.889 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.310 21.497 0.290 21.622 hybrid contribution 0.265 -0.814 0.372 0.934 sum -2.045 20.682 0.662 20.794 Atomic orbital electron populations 1.22773 0.95325 1.03208 1.01507 1.20322 0.95732 0.95239 0.95089 1.22012 1.00903 0.95490 1.01480 1.21709 1.01153 0.94696 0.96454 1.21685 0.98793 0.95994 1.01433 1.21803 0.98362 1.02437 0.80034 1.45891 1.75535 1.05876 1.08506 1.16167 0.78030 0.80845 0.85457 1.90861 1.58828 1.84520 1.13389 1.45725 1.73669 1.09224 1.10731 1.21584 0.98932 0.79575 0.98349 1.19320 0.97732 0.92495 0.92897 1.21098 1.46984 0.93016 0.94669 0.92175 1.24994 0.95238 0.99274 0.94823 1.69965 1.49436 1.30721 1.03258 0.86462 0.78080 0.83702 0.79360 1.19564 1.20968 1.20956 1.20822 0.98529 0.86438 0.95293 1.22092 0.99549 0.98302 0.96457 0.92966 0.92812 0.89676 0.92855 0.92706 0.92965 0.92116 0.92262 0.91121 0.91144 0.88580 0.90055 0.77161 0.92772 0.92923 0.96030 0.96030 0.92948 0.88855 0.91492 0.91428 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 6.25 37.16 0.23 -1.13 16 2 C -0.06 -0.54 0.71 -155.08 -0.11 -0.65 16 3 C -0.14 -1.05 7.98 37.16 0.30 -0.75 16 4 C -0.10 -0.88 4.75 -26.38 -0.13 -1.00 16 5 C -0.14 -1.40 5.35 -27.81 -0.15 -1.55 16 6 C 0.10 1.02 5.37 -4.53 -0.02 1.00 16 7 N -0.62 -8.42 2.33 -182.95 -0.43 -8.85 16 8 C 0.69 12.62 8.18 -86.92 -0.71 11.91 16 9 O -0.60 -13.15 15.46 5.29 0.08 -13.07 16 10 N -0.74 -13.55 5.42 -65.23 -0.35 -13.90 16 11 C 0.14 3.05 5.62 -4.04 -0.02 3.02 16 12 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16 13 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 14 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 17 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C 0.11 1.38 5.52 -5.99 -0.03 1.35 16 22 C -0.13 -1.26 5.11 -26.60 -0.14 -1.39 16 23 H 0.05 0.38 7.70 -51.93 -0.40 -0.02 16 24 H 0.05 0.40 8.02 -51.93 -0.42 -0.01 16 25 H 0.09 0.75 2.81 -51.93 -0.15 0.61 16 26 H 0.05 0.40 8.11 -51.93 -0.42 -0.03 16 27 H 0.05 0.38 7.96 -51.93 -0.41 -0.03 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.46 7.69 -51.93 -0.40 0.06 16 30 H 0.06 0.51 7.96 -51.92 -0.41 0.10 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.86 7.42 -51.93 -0.39 0.47 16 33 H 0.10 0.86 4.64 -51.93 -0.24 0.61 16 34 H 0.08 0.88 5.85 -51.93 -0.30 0.57 16 35 H 0.39 6.32 5.92 -40.82 -0.24 6.08 16 36 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.09 1.36 6.61 -51.93 -0.34 1.01 16 42 H 0.07 0.71 5.44 -51.93 -0.28 0.43 16 43 H 0.07 0.79 7.33 -51.93 -0.38 0.41 16 44 H 0.07 0.64 7.60 -51.93 -0.39 0.24 16 LS Contribution 327.84 15.07 4.94 4.94 Total: -1.00 -31.53 327.84 -8.64 -40.16 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.26 Total: 1.99 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.34 Total: -2.30 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.04 Total: -48.21 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.08 Total: -13.07 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.53 -8.64 -40.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334983530.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.294 kcal (2) G-P(sol) polarization free energy of solvation -31.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds