Wall clock time and date at job start Mon Mar 30 2020 01:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 108.56664 * 2 1 4 4 C 1.53839 * 108.61555 * 117.94136 * 2 1 3 5 5 C 1.52839 * 113.06036 * 78.20386 * 4 2 1 6 6 C 1.51023 * 112.18236 * 318.06243 * 5 4 2 7 7 N 1.47420 * 106.56834 * 90.02707 * 6 5 4 8 8 C 1.34776 * 118.49255 * 100.86972 * 7 6 5 9 9 O 1.21591 * 119.99674 * 174.66720 * 8 7 6 10 10 N 1.34774 * 120.00431 * 354.66933 * 8 7 6 11 11 C 1.46505 * 120.00386 * 184.90329 * 10 8 7 12 12 C 1.52991 * 109.47133 * 179.97438 * 11 10 8 13 13 C 1.50705 * 109.47136 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99665 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00212 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00123 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.47229 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46883 * 120.00515 * 17 15 13 20 20 H 1.48501 * 109.47414 * 240.00216 * 17 15 13 21 21 C 1.40510 * 123.01213 * 280.89644 * 7 6 5 22 22 C 1.50979 * 108.63797 * 242.17377 * 2 1 3 23 23 H 1.08999 * 109.47496 * 284.49895 * 1 2 3 24 24 H 1.09004 * 109.47134 * 44.49817 * 1 2 3 25 25 H 1.08993 * 109.47209 * 164.49546 * 1 2 3 26 26 H 1.09007 * 109.46486 * 177.94121 * 3 2 1 27 27 H 1.08998 * 109.47006 * 297.93912 * 3 2 1 28 28 H 1.08993 * 109.47237 * 57.94349 * 3 2 1 29 29 H 1.08996 * 108.76720 * 317.28037 * 4 2 1 30 30 H 1.09009 * 108.76639 * 199.12700 * 4 2 1 31 31 H 1.08998 * 108.94186 * 197.36404 * 5 4 2 32 32 H 1.09006 * 108.93879 * 78.75828 * 5 4 2 33 33 H 1.09004 * 110.03270 * 330.76798 * 6 5 4 34 34 H 1.08997 * 110.12081 * 209.33201 * 6 5 4 35 35 H 0.97002 * 120.00164 * 4.89827 * 10 8 7 36 36 H 1.09002 * 109.46615 * 299.99982 * 11 10 8 37 37 H 1.09000 * 109.47145 * 59.99543 * 11 10 8 38 38 H 1.09002 * 109.47390 * 299.99550 * 12 11 10 39 39 H 1.09000 * 109.47443 * 59.99768 * 12 11 10 40 40 H 0.96996 * 120.00200 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.36088 * 179.29504 * 21 7 6 42 42 H 1.09001 * 109.35457 * 298.87073 * 21 7 6 43 43 H 1.08994 * 109.60779 * 212.15428 * 22 2 1 44 44 H 1.08997 * 109.58278 * 91.69483 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0172 1.4504 0.0000 4 6 2.0211 -0.6831 1.2880 5 6 1.9398 -2.2081 1.2252 6 6 0.6579 -2.6848 0.5846 7 7 0.9274 -2.7995 -0.8602 8 6 1.1704 -4.0215 -1.3740 9 8 1.2997 -4.1614 -2.5748 10 7 1.2700 -5.0886 -0.5567 11 6 1.6400 -6.3970 -1.1020 12 6 1.6822 -7.4272 0.0284 13 6 2.0635 -8.7730 -0.5325 14 1 2.2560 -8.8826 -1.5895 15 6 2.1665 -9.8643 0.3038 16 7 1.9315 -9.7310 1.5909 17 14 2.6384 -11.5326 -0.3915 18 1 2.8475 -11.4169 -1.8571 19 1 3.8927 -12.0001 0.2517 20 1 1.5508 -12.5071 -0.1216 21 6 0.9429 -1.6930 -1.7262 22 6 2.0125 -0.6678 -1.2652 23 1 -0.3634 0.2573 0.9949 24 1 -0.3633 0.7330 -0.7203 25 1 -0.3633 -0.9902 -0.2747 26 1 3.1065 1.4677 0.0369 27 1 1.6765 1.9481 -0.9079 28 1 1.6159 1.9685 0.8709 29 1 1.4145 -0.3337 2.1234 30 1 3.0572 -0.3942 1.4650 31 1 1.9992 -2.6075 2.2376 32 1 2.7848 -2.5840 0.6483 33 1 -0.1385 -1.9614 0.7596 34 1 0.3751 -3.6564 0.9897 35 1 1.0967 -4.9902 0.3927 36 1 0.9034 -6.7024 -1.8451 37 1 2.6223 -6.3311 -1.5698 38 1 2.4191 -7.1216 0.7712 39 1 0.7001 -7.4932 0.4966 40 1 2.0037 -10.4988 2.1792 41 1 1.1760 -2.0284 -2.7368 42 1 -0.0380 -1.2178 -1.7228 43 1 2.9531 -1.1831 -1.0709 44 1 2.1581 0.0829 -2.0419 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334983530.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:29 Heat of formation + Delta-G solvation = -38.554036 kcal Electronic energy + Delta-G solvation = -21521.614494 eV Core-core repulsion = 18473.646170 eV Total energy + Delta-G solvation = -3047.968325 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.15002 -39.77895 -36.72856 -36.01628 -34.86473 -33.61992 -31.61632 -29.52551 -28.72741 -27.05777 -26.71807 -24.46226 -23.15195 -22.65427 -20.74511 -19.40584 -19.06478 -18.50532 -17.39992 -17.13645 -16.51283 -16.08202 -15.80098 -15.63955 -15.39751 -15.18148 -14.85432 -14.30605 -14.05118 -13.91251 -13.61874 -13.21482 -13.03259 -12.96105 -12.82259 -12.58912 -12.51403 -12.31135 -12.24714 -12.03778 -11.69225 -11.62850 -11.49571 -11.32717 -11.17164 -11.07764 -10.92176 -10.60660 -10.12845 -9.32760 -8.23909 -6.34048 1.41309 1.42192 1.55468 1.79370 2.12096 2.41335 2.99913 3.10852 3.79091 3.80803 3.87389 4.03890 4.13206 4.23233 4.36457 4.48592 4.50527 4.56494 4.57924 4.73278 4.74744 4.83327 4.85985 4.90804 4.99389 5.00878 5.13565 5.14733 5.20205 5.26145 5.30415 5.35246 5.49222 5.50632 5.54042 5.58683 5.59439 5.75956 5.86186 5.99841 6.17443 6.78768 6.98497 7.35201 7.58550 8.88261 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039451 B = 0.003627 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.573674 B = 7718.489195 C = 8097.706913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.063 4.063 3 C -0.138 4.138 4 C -0.100 4.100 5 C -0.137 4.137 6 C 0.092 3.908 7 N -0.608 5.608 8 C 0.689 3.311 9 O -0.640 6.640 10 N -0.733 5.733 11 C 0.159 3.841 12 C 0.026 3.974 13 C -0.546 4.546 14 H 0.058 0.942 15 C 0.008 3.992 16 N -0.926 5.926 17 Si 0.965 3.035 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.276 1.276 21 C 0.109 3.891 22 C -0.117 4.117 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.043 0.957 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.404 0.596 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.008 0.992 39 H 0.009 0.991 40 H 0.266 0.734 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.047 0.953 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.873 22.931 1.758 23.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.063 4.063 3 C -0.195 4.195 4 C -0.138 4.138 5 C -0.176 4.176 6 C -0.029 4.029 7 N -0.343 5.343 8 C 0.391 3.609 9 O -0.522 6.522 10 N -0.390 5.390 11 C 0.035 3.965 12 C -0.012 4.012 13 C -0.584 4.584 14 H 0.076 0.924 15 C -0.191 4.191 16 N -0.565 5.565 17 Si 0.790 3.210 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.015 4.015 22 C -0.156 4.156 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.141 0.859 34 H 0.097 0.903 35 H 0.242 0.758 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.108 0.892 43 H 0.066 0.934 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.776 22.775 1.077 22.969 hybrid contribution 0.394 -1.121 0.164 1.200 sum -2.382 21.654 1.241 21.820 Atomic orbital electron populations 1.22715 0.94511 1.02707 1.02631 1.20310 0.96320 0.95776 0.93915 1.21970 1.00779 0.94538 1.02248 1.21712 1.01622 0.93290 0.97150 1.21638 0.97138 0.97347 1.01433 1.22086 0.99693 1.03262 0.77859 1.45941 1.73947 1.04441 1.09976 1.16331 0.77900 0.81921 0.84785 1.90829 1.60729 1.85382 1.15252 1.45428 1.73941 1.08241 1.11376 1.21073 0.97991 0.80619 0.96830 1.19111 0.96312 0.92574 0.93188 1.21481 1.47523 0.94572 0.94844 0.92412 1.25857 0.94945 1.03163 0.95126 1.70059 1.49965 1.32080 1.04412 0.85392 0.78021 0.78826 0.78776 1.19066 1.20167 1.20151 1.21000 1.00540 0.86301 0.93685 1.22021 0.97778 0.97792 0.97971 0.91555 0.92040 0.90829 0.93133 0.92199 0.91939 0.90295 0.92322 0.89953 0.93792 0.85891 0.90259 0.75764 0.93965 0.94078 0.97341 0.97304 0.92521 0.91712 0.89161 0.93413 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 6.25 71.98 0.45 -1.67 16 2 C -0.06 -0.91 0.71 -52.55 -0.04 -0.94 16 3 C -0.14 -1.65 7.98 71.98 0.57 -1.07 16 4 C -0.10 -1.47 4.75 30.82 0.15 -1.32 16 5 C -0.14 -2.55 5.35 29.90 0.16 -2.39 16 6 C 0.09 1.82 5.37 85.56 0.46 2.28 16 7 N -0.61 -16.29 2.33 -851.01 -1.99 -18.28 16 8 C 0.69 25.58 8.18 179.06 1.47 27.05 16 9 O -0.64 -29.12 15.46 -4.00 -0.06 -29.18 16 10 N -0.73 -27.45 5.42 -478.54 -2.59 -30.04 16 11 C 0.16 7.22 5.62 86.38 0.49 7.70 16 12 C 0.03 1.32 5.09 29.85 0.15 1.47 16 13 C -0.55 -30.97 9.11 25.60 0.23 -30.74 16 14 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 15 C 0.01 0.44 5.46 84.65 0.46 0.91 16 16 N -0.93 -54.37 13.29 21.45 0.28 -54.08 16 17 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 C 0.11 2.59 5.52 88.20 0.49 3.07 16 22 C -0.12 -2.22 5.11 30.68 0.16 -2.07 16 23 H 0.07 0.68 7.70 -2.39 -0.02 0.66 16 24 H 0.06 0.71 8.02 -2.38 -0.02 0.69 16 25 H 0.07 1.09 2.81 -2.39 -0.01 1.08 16 26 H 0.05 0.64 8.11 -2.38 -0.02 0.62 16 27 H 0.06 0.66 7.96 -2.39 -0.02 0.65 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.91 7.69 -2.39 -0.02 0.89 16 30 H 0.06 0.89 7.96 -2.38 -0.02 0.87 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 32 H 0.04 1.06 7.42 -2.38 -0.02 1.05 16 33 H 0.12 1.84 4.64 -2.39 -0.01 1.83 16 34 H 0.08 1.62 5.85 -2.39 -0.01 1.60 16 35 H 0.40 13.11 5.92 -92.71 -0.55 12.56 16 36 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 41 H 0.06 1.94 6.61 -2.39 -0.02 1.92 16 42 H 0.09 1.76 5.44 -2.39 -0.01 1.74 16 43 H 0.05 1.10 7.33 -2.39 -0.02 1.09 16 44 H 0.08 1.38 7.60 -2.39 -0.02 1.36 16 Total: -1.00 -68.31 327.84 3.30 -65.01 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.43 Total: 18.29 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 5.20 Total: 2.27 kcal Atomic # 7 Polarization: -98.11 SS G_CDS: -4.29 Total: -102.40 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.06 Total: -29.18 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -68.31 3.30 -65.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334983530.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.453 kcal (2) G-P(sol) polarization free energy of solvation -68.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds