Wall clock time and date at job start Mon Mar 30 2020 01:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.50696 * 109.46923 * 239.99966 * 2 1 3 5 5 H 1.08004 * 119.99967 * 239.99721 * 4 2 1 6 6 C 1.37875 * 120.00542 * 60.00269 * 4 2 1 7 7 N 1.31516 * 119.99408 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47216 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47057 * 120.00167 * 8 6 4 11 11 H 1.48497 * 109.47025 * 240.00141 * 8 6 4 12 12 C 1.52997 * 109.46817 * 120.00127 * 2 1 3 13 13 N 1.46506 * 109.47289 * 299.99814 * 12 2 1 14 14 C 1.34774 * 120.00072 * 180.02562 * 13 12 2 15 15 O 1.21583 * 120.00212 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99868 * 179.97438 * 14 13 12 17 17 C 1.47029 * 125.64844 * 0.02923 * 16 14 13 18 18 C 1.54326 * 107.27188 * 181.02141 * 17 16 14 19 19 C 1.55154 * 102.93981 * 22.18919 * 18 17 16 20 20 C 1.52999 * 111.00738 * 82.57462 * 19 18 17 21 21 C 1.53005 * 111.00374 * 206.42197 * 19 18 17 22 22 C 1.47423 * 125.65174 * 179.71355 * 16 14 13 23 23 H 1.09002 * 109.47070 * 300.00053 * 1 2 3 24 24 H 1.09000 * 109.46986 * 59.99882 * 1 2 3 25 25 H 1.08996 * 109.47407 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47140 * 300.00024 * 3 2 1 28 28 H 1.09002 * 109.46777 * 59.99451 * 3 2 1 29 29 H 0.96999 * 119.99910 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47289 * 179.97438 * 12 2 1 31 31 H 1.09004 * 109.47261 * 59.99941 * 12 2 1 32 32 H 0.97001 * 119.99251 * 0.02562 * 13 12 2 33 33 H 1.09000 * 109.87558 * 300.43541 * 17 16 14 34 34 H 1.08997 * 109.88267 * 61.44820 * 17 16 14 35 35 H 1.08997 * 110.71932 * 140.55220 * 18 17 16 36 36 H 1.08996 * 110.72070 * 263.65106 * 18 17 16 37 37 H 1.09004 * 109.46841 * 59.99349 * 20 19 18 38 38 H 1.08998 * 109.47610 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.47043 * 300.00462 * 20 19 18 40 40 H 1.09007 * 109.46634 * 60.00669 * 21 19 18 41 41 H 1.08998 * 109.47187 * 180.02562 * 21 19 18 42 42 H 1.09000 * 109.47223 * 300.00209 * 21 19 18 43 43 H 1.08998 * 110.36864 * 274.75118 * 22 16 14 44 44 H 1.09007 * 110.36379 * 37.07437 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1473 -2.2864 -3.6038 10 1 1.1678 -1.5866 -4.8165 11 1 3.1473 -0.1859 -4.8160 12 6 2.0399 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4455 14 6 1.8776 -0.4909 3.6695 15 8 2.5765 -1.4794 3.7811 16 7 1.4287 0.1448 4.7700 17 6 0.5795 1.3450 4.7798 18 6 0.3428 1.7267 6.2562 19 6 1.5358 1.0533 6.9847 20 6 2.7914 1.9236 6.9013 21 6 1.1836 0.7409 8.4406 22 6 1.7026 -0.2519 6.1632 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1301 1.4425 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 0.7097 1.1618 -3.4844 30 1 3.1299 -0.7217 1.2491 31 1 1.6766 -1.7490 1.2492 32 1 0.9937 0.7578 2.3564 33 1 1.0846 2.1606 4.2624 34 1 -0.3717 1.1300 4.2930 35 1 0.3737 2.8087 6.3845 36 1 -0.6060 1.3246 6.6112 37 1 2.5961 2.8888 7.3687 38 1 3.6120 1.4283 7.4203 39 1 3.0603 2.0742 5.8558 40 1 0.3292 0.0647 8.4705 41 1 2.0373 0.2699 8.9278 42 1 0.9337 1.6657 8.9605 43 1 0.9851 -1.0039 6.4915 44 1 2.7203 -0.6310 6.2566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335588247.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:55 Heat of formation + Delta-G solvation = -44.854465 kcal Electronic energy + Delta-G solvation = -21529.012160 eV Core-core repulsion = 18480.770628 eV Total energy + Delta-G solvation = -3048.241532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.19058 -38.20432 -36.24071 -33.71739 -32.96020 -30.71616 -29.77132 -27.54562 -26.75978 -25.69688 -25.39501 -24.39462 -22.88684 -19.67225 -19.36828 -18.76327 -17.65781 -16.16558 -15.83966 -15.29582 -14.80474 -14.60710 -14.34960 -14.19047 -13.64847 -13.21069 -13.06919 -12.93556 -12.60161 -12.50470 -12.29225 -12.15300 -11.98801 -11.71057 -11.34816 -11.17625 -10.97419 -10.86969 -10.84591 -10.70194 -10.63184 -10.35629 -10.18275 -9.71855 -9.60199 -9.27679 -8.75391 -8.59650 -8.37817 -8.06127 -5.99905 -4.09544 2.99806 3.28933 3.37438 3.42824 3.66620 4.15842 4.40215 4.42537 4.60859 4.64441 5.03172 5.07485 5.13052 5.26973 5.40910 5.47340 5.50658 5.61639 5.67132 5.72258 5.80462 5.86099 5.94986 6.00483 6.15564 6.21532 6.40336 6.45702 6.54728 6.83905 6.85756 6.97109 7.06256 7.15056 7.38559 7.48538 7.58708 7.72437 8.03721 8.15338 8.41086 8.49484 8.90641 9.09752 9.56107 11.01620 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042779 B = 0.003908 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.362817 B = 7163.873126 C = 7403.793707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.055 3.945 3 C -0.129 4.129 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.150 3.850 13 N -0.731 5.731 14 C 0.715 3.285 15 O -0.598 6.598 16 N -0.641 5.641 17 C 0.100 3.900 18 C -0.120 4.120 19 C -0.081 4.081 20 C -0.135 4.135 21 C -0.134 4.134 22 C 0.136 3.864 23 H 0.005 0.995 24 H 0.085 0.915 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.085 0.915 28 H 0.004 0.996 29 H 0.259 0.741 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.393 0.607 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 4.955 18.198 19.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.186 4.186 4 C -0.542 4.542 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.027 3.973 13 N -0.385 5.385 14 C 0.417 3.583 15 O -0.477 6.477 16 N -0.381 5.381 17 C -0.024 4.024 18 C -0.158 4.158 19 C -0.082 4.082 20 C -0.192 4.192 21 C -0.192 4.192 22 C 0.012 3.988 23 H 0.023 0.977 24 H 0.103 0.897 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.104 0.896 28 H 0.023 0.977 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.228 0.772 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.881 4.276 17.997 18.593 hybrid contribution -0.031 -0.015 -0.964 0.965 sum -1.912 4.260 17.032 17.661 Atomic orbital electron populations 1.21809 0.97785 0.99138 0.99920 1.18369 0.92803 0.92790 0.90570 1.21807 0.98551 0.98357 0.99919 1.21033 1.31293 1.12052 0.89848 0.92342 1.24881 0.94892 0.94944 0.98843 1.69819 1.36849 1.22797 1.23054 0.86513 0.78628 0.79761 0.82975 1.19738 1.21092 1.21086 1.21591 0.97877 0.95433 0.82411 1.45512 1.55538 1.33045 1.04404 1.15600 0.80277 0.82490 0.79924 1.90878 1.43469 1.27736 1.85650 1.47536 1.55026 1.30396 1.05152 1.21943 0.94761 0.88016 0.97634 1.22714 0.98266 1.01121 0.93680 1.21819 0.95821 0.95432 0.95153 1.21731 0.96168 0.98881 1.02416 1.21711 1.01653 1.01662 0.94142 1.22116 1.01668 0.95325 0.79655 0.97651 0.89651 0.95461 0.95470 0.89644 0.97664 0.93114 0.92982 0.92984 0.77173 0.91759 0.91741 0.90101 0.90502 0.92434 0.92397 0.92188 0.92287 0.92257 0.92191 0.92031 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 3 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 4 C -0.50 -13.41 8.01 -34.44 -0.28 -13.69 16 5 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.79 9.35 55.43 0.52 -23.27 16 8 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.15 3.35 4.50 -4.04 -0.02 3.33 16 13 N -0.73 -14.09 4.92 -65.22 -0.32 -14.41 16 14 C 0.72 13.88 8.49 -86.92 -0.74 13.14 16 15 O -0.60 -13.88 16.60 5.29 0.09 -13.79 16 16 N -0.64 -9.53 3.31 -176.10 -0.58 -10.11 16 17 C 0.10 1.14 5.83 -3.06 -0.02 1.12 16 18 C -0.12 -1.01 5.91 -24.90 -0.15 -1.16 16 19 C -0.08 -0.73 0.96 -152.24 -0.15 -0.88 16 20 C -0.13 -1.21 8.59 37.16 0.32 -0.89 16 21 C -0.13 -0.93 8.68 37.16 0.32 -0.61 16 22 C 0.14 1.69 5.85 -2.41 -0.01 1.67 16 23 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 24 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 28 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 29 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.39 6.92 5.15 -40.82 -0.21 6.71 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.57 8.05 -51.93 -0.42 0.15 16 36 H 0.08 0.58 8.04 -51.93 -0.42 0.17 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.65 7.91 -51.93 -0.41 0.24 16 40 H 0.06 0.40 8.07 -51.93 -0.42 -0.02 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.74 7.99 -51.93 -0.41 0.32 16 44 H 0.08 1.04 7.95 -51.93 -0.41 0.63 16 LS Contribution 340.16 15.07 5.13 5.13 Total: -1.00 -29.73 340.16 -8.29 -38.02 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.82 Total: 2.94 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -0.29 Total: -0.40 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.39 Total: -47.80 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.09 Total: -13.79 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.73 -8.29 -38.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335588247.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.831 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds