Wall clock time and date at job start Mon Mar 30 2020 01:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.50696 * 109.46923 * 239.99966 * 2 1 3 5 5 H 1.08004 * 119.99967 * 239.99721 * 4 2 1 6 6 C 1.37875 * 120.00542 * 60.00269 * 4 2 1 7 7 N 1.31516 * 119.99408 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47216 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47057 * 120.00167 * 8 6 4 11 11 H 1.48497 * 109.47025 * 240.00141 * 8 6 4 12 12 C 1.52997 * 109.46817 * 120.00127 * 2 1 3 13 13 N 1.46506 * 109.47289 * 299.99814 * 12 2 1 14 14 C 1.34774 * 120.00072 * 180.02562 * 13 12 2 15 15 O 1.21583 * 120.00212 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99868 * 179.97438 * 14 13 12 17 17 C 1.47029 * 125.64844 * 0.02923 * 16 14 13 18 18 C 1.54326 * 107.27188 * 181.02141 * 17 16 14 19 19 C 1.55154 * 102.93981 * 22.18919 * 18 17 16 20 20 C 1.52999 * 111.00738 * 82.57462 * 19 18 17 21 21 C 1.53005 * 111.00374 * 206.42197 * 19 18 17 22 22 C 1.47423 * 125.65174 * 179.71355 * 16 14 13 23 23 H 1.09002 * 109.47070 * 300.00053 * 1 2 3 24 24 H 1.09000 * 109.46986 * 59.99882 * 1 2 3 25 25 H 1.08996 * 109.47407 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47140 * 300.00024 * 3 2 1 28 28 H 1.09002 * 109.46777 * 59.99451 * 3 2 1 29 29 H 0.96999 * 119.99910 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47289 * 179.97438 * 12 2 1 31 31 H 1.09004 * 109.47261 * 59.99941 * 12 2 1 32 32 H 0.97001 * 119.99251 * 0.02562 * 13 12 2 33 33 H 1.09000 * 109.87558 * 300.43541 * 17 16 14 34 34 H 1.08997 * 109.88267 * 61.44820 * 17 16 14 35 35 H 1.08997 * 110.71932 * 140.55220 * 18 17 16 36 36 H 1.08996 * 110.72070 * 263.65106 * 18 17 16 37 37 H 1.09004 * 109.46841 * 59.99349 * 20 19 18 38 38 H 1.08998 * 109.47610 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.47043 * 300.00462 * 20 19 18 40 40 H 1.09007 * 109.46634 * 60.00669 * 21 19 18 41 41 H 1.08998 * 109.47187 * 180.02562 * 21 19 18 42 42 H 1.09000 * 109.47223 * 300.00209 * 21 19 18 43 43 H 1.08998 * 110.36864 * 274.75118 * 22 16 14 44 44 H 1.09007 * 110.36379 * 37.07437 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1473 -2.2864 -3.6038 10 1 1.1678 -1.5866 -4.8165 11 1 3.1473 -0.1859 -4.8160 12 6 2.0399 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4455 14 6 1.8776 -0.4909 3.6695 15 8 2.5765 -1.4794 3.7811 16 7 1.4287 0.1448 4.7700 17 6 0.5795 1.3450 4.7798 18 6 0.3428 1.7267 6.2562 19 6 1.5358 1.0533 6.9847 20 6 2.7914 1.9236 6.9013 21 6 1.1836 0.7409 8.4406 22 6 1.7026 -0.2519 6.1632 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1301 1.4425 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 0.7097 1.1618 -3.4844 30 1 3.1299 -0.7217 1.2491 31 1 1.6766 -1.7490 1.2492 32 1 0.9937 0.7578 2.3564 33 1 1.0846 2.1606 4.2624 34 1 -0.3717 1.1300 4.2930 35 1 0.3737 2.8087 6.3845 36 1 -0.6060 1.3246 6.6112 37 1 2.5961 2.8888 7.3687 38 1 3.6120 1.4283 7.4203 39 1 3.0603 2.0742 5.8558 40 1 0.3292 0.0647 8.4705 41 1 2.0373 0.2699 8.9278 42 1 0.9337 1.6657 8.9605 43 1 0.9851 -1.0039 6.4915 44 1 2.7203 -0.6310 6.2566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335588247.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:54 Heat of formation + Delta-G solvation = -61.953385 kcal Electronic energy + Delta-G solvation = -21529.753625 eV Core-core repulsion = 18480.770628 eV Total energy + Delta-G solvation = -3048.982996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.44600 -39.47082 -38.02647 -35.16093 -34.41572 -32.55663 -30.66383 -28.21998 -28.00011 -27.58374 -27.30986 -25.93915 -23.94121 -21.13057 -20.61531 -20.18687 -18.98858 -17.81074 -17.29042 -16.82021 -16.63691 -15.83587 -15.46863 -15.14700 -15.02739 -14.82007 -14.53366 -14.09555 -13.99261 -13.71219 -13.49009 -13.21964 -13.11010 -13.03855 -12.78998 -12.68359 -12.57287 -12.37931 -12.26332 -12.14234 -11.74055 -11.56525 -11.50457 -11.44019 -11.36715 -11.15307 -10.71375 -10.40925 -10.12764 -9.43215 -8.02781 -6.18407 1.41643 1.45436 1.55028 1.68261 2.14089 2.45998 3.10709 3.20797 3.50518 3.63595 3.90276 4.25539 4.30509 4.39276 4.40422 4.50328 4.62790 4.67376 4.70333 4.79756 4.87782 4.93484 4.98043 5.02744 5.03536 5.06847 5.08800 5.16923 5.17966 5.26401 5.33525 5.36223 5.39894 5.52124 5.60598 5.65469 5.66950 6.09544 6.12991 6.20246 6.42892 6.85340 7.02246 7.49236 7.57655 8.96623 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042779 B = 0.003908 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.362817 B = 7163.873126 C = 7403.793707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.052 3.948 3 C -0.117 4.117 4 C -0.529 4.529 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.947 3.053 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.280 1.280 12 C 0.167 3.833 13 N -0.724 5.724 14 C 0.709 3.291 15 O -0.644 6.644 16 N -0.637 5.637 17 C 0.090 3.910 18 C -0.110 4.110 19 C -0.072 4.072 20 C -0.134 4.134 21 C -0.130 4.130 22 C 0.126 3.874 23 H 0.033 0.967 24 H 0.064 0.936 25 H 0.017 0.983 26 H 0.017 0.983 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.261 0.739 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.403 0.597 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.036 0.964 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.440 6.396 19.824 21.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.051 3.949 3 C -0.175 4.175 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.774 3.226 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.206 1.206 12 C 0.043 3.957 13 N -0.379 5.379 14 C 0.411 3.589 15 O -0.527 6.527 16 N -0.375 5.375 17 C -0.033 4.033 18 C -0.147 4.147 19 C -0.072 4.072 20 C -0.191 4.191 21 C -0.187 4.187 22 C 0.003 3.997 23 H 0.052 0.948 24 H 0.083 0.917 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.240 0.760 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.993 5.765 19.662 20.707 hybrid contribution 0.307 -0.455 -1.416 1.518 sum -2.687 5.310 18.246 19.192 Atomic orbital electron populations 1.21640 0.97025 0.98611 1.00240 1.18365 0.93333 0.93076 0.90110 1.21638 0.97852 0.97776 1.00231 1.21281 1.31751 1.12182 0.91522 0.93790 1.25451 0.95099 0.95604 1.00940 1.69911 1.36996 1.23238 1.23590 0.85679 0.78144 0.78701 0.80114 1.20101 1.20622 1.20617 1.21152 0.96630 0.94682 0.83268 1.45210 1.55749 1.33169 1.03756 1.15762 0.80114 0.82292 0.80728 1.90838 1.45520 1.29893 1.86425 1.47579 1.54324 1.30787 1.04770 1.22264 0.94243 0.86472 1.00290 1.22748 0.98454 1.02536 0.90978 1.21803 0.96195 0.93275 0.95972 1.21733 0.96233 1.00044 1.01091 1.21695 1.01881 1.02741 0.92410 1.22385 1.00644 0.97695 0.78927 0.94799 0.91693 0.96365 0.96393 0.91681 0.94829 0.92973 0.94788 0.94752 0.75979 0.91417 0.91132 0.87770 0.88993 0.90207 0.92542 0.94498 0.91826 0.92229 0.90322 0.91520 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 2 C 0.05 2.48 0.50 -52.93 -0.03 2.45 16 3 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 4 C -0.53 -28.62 8.01 25.60 0.21 -28.41 16 5 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 6 C 0.03 1.54 5.15 84.65 0.44 1.97 16 7 N -0.90 -48.17 9.35 21.45 0.20 -47.97 16 8 Si 0.95 43.09 29.54 68.60 2.03 45.12 16 9 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 C 0.17 7.61 4.50 86.38 0.39 8.00 16 13 N -0.72 -27.73 4.92 -478.53 -2.35 -30.08 16 14 C 0.71 27.67 8.49 179.06 1.52 29.19 16 15 O -0.64 -30.77 16.60 -3.98 -0.07 -30.83 16 16 N -0.64 -18.37 3.31 -829.31 -2.75 -21.12 16 17 C 0.09 1.82 5.83 86.73 0.51 2.32 16 18 C -0.11 -1.44 5.91 31.78 0.19 -1.25 16 19 C -0.07 -1.10 0.96 -50.71 -0.05 -1.15 16 20 C -0.13 -2.12 8.59 71.98 0.62 -1.50 16 21 C -0.13 -1.38 8.68 71.98 0.62 -0.75 16 22 C 0.13 3.03 5.85 86.93 0.51 3.53 16 23 H 0.03 1.30 6.86 -2.39 -0.02 1.29 16 24 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 25 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 28 H 0.03 1.29 6.86 -2.39 -0.02 1.28 16 29 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 30 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.03 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.40 13.59 5.15 -92.71 -0.48 13.11 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 35 H 0.10 0.97 8.05 -2.39 -0.02 0.95 16 36 H 0.09 0.99 8.04 -2.39 -0.02 0.98 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.04 0.75 7.91 -2.39 -0.02 0.73 16 40 H 0.06 0.64 8.07 -2.38 -0.02 0.62 16 41 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.07 1.53 7.99 -2.39 -0.02 1.51 16 44 H 0.05 1.53 7.95 -2.38 -0.02 1.51 16 Total: -1.00 -65.13 340.16 3.62 -61.50 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.48 Total: 18.50 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 6.08 Total: 4.88 kcal Atomic # 7 Polarization: -94.27 SS G_CDS: -4.90 Total: -99.17 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.07 Total: -30.83 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -65.13 3.62 -61.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335588247.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.449 kcal (2) G-P(sol) polarization free energy of solvation -65.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds