Wall clock time and date at job start Mon Mar 30 2020 01:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.26235 * 2 1 4 4 C 1.50880 * 109.37016 * 119.68611 * 2 1 3 5 5 C 1.52568 * 109.36179 * 212.07991 * 4 2 1 6 6 C 1.47095 * 114.32405 * 274.98845 * 5 4 2 7 7 C 1.54863 * 110.32536 * 62.79556 * 6 5 4 8 8 N 1.44581 * 109.60209 * 288.73778 * 7 6 5 9 9 C 1.34770 * 118.63930 * 270.70319 * 8 7 6 10 10 O 1.21593 * 119.99857 * 180.02562 * 9 8 7 11 11 N 1.34774 * 120.00425 * 359.97438 * 9 8 7 12 12 C 1.46504 * 120.00175 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47212 * 180.02562 * 12 11 9 14 14 C 1.50699 * 109.47258 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99651 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99839 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00331 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99726 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47376 * 59.99698 * 18 16 14 20 20 H 1.48500 * 109.47054 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47283 * 299.99426 * 18 16 14 22 22 C 1.47598 * 122.71418 * 90.98419 * 8 7 6 23 23 H 1.08993 * 109.46764 * 300.31476 * 1 2 3 24 24 H 1.08993 * 109.46828 * 60.31567 * 1 2 3 25 25 H 1.09000 * 109.46835 * 180.31609 * 1 2 3 26 26 H 1.09002 * 109.47035 * 180.60349 * 3 2 1 27 27 H 1.09002 * 109.47316 * 300.60806 * 3 2 1 28 28 H 1.09004 * 109.46943 * 60.60443 * 3 2 1 29 29 H 1.09001 * 109.49402 * 92.10942 * 4 2 1 30 30 H 1.09000 * 109.48848 * 332.04425 * 4 2 1 31 31 H 1.08998 * 108.51588 * 153.73060 * 5 4 2 32 32 H 1.09000 * 108.50999 * 36.23404 * 5 4 2 33 33 H 1.09005 * 109.32489 * 302.53642 * 6 5 4 34 34 H 1.08997 * 109.19033 * 182.97623 * 6 5 4 35 35 H 1.09000 * 109.44762 * 168.69694 * 7 6 5 36 36 H 1.09005 * 109.42554 * 48.76242 * 7 6 5 37 37 H 0.97000 * 120.00297 * 0.02562 * 11 9 8 38 38 H 1.08997 * 109.46827 * 60.00638 * 12 11 9 39 39 H 1.08991 * 109.47749 * 300.00562 * 12 11 9 40 40 H 1.09004 * 109.46629 * 300.00374 * 13 12 11 41 41 H 1.08997 * 109.47083 * 60.00330 * 13 12 11 42 42 H 0.97002 * 120.00014 * 180.02562 * 17 16 14 43 43 H 1.08997 * 108.95062 * 78.29283 * 22 8 7 44 44 H 1.08998 * 108.94861 * 196.92499 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0348 1.4443 0.0000 4 6 2.0304 -0.7049 1.2366 5 6 3.3488 -0.0768 1.6783 6 6 4.5358 -0.6192 0.9997 7 6 4.4645 -0.3319 -0.5204 8 7 3.4427 -1.1585 -1.1229 9 6 3.7849 -2.3806 -1.5767 10 8 2.9453 -3.0961 -2.0882 11 7 5.0577 -2.8091 -1.4646 12 6 5.4295 -4.1377 -1.9574 13 6 6.9206 -4.3748 -1.7096 14 6 7.3031 -5.7413 -2.2171 15 1 6.5572 -6.3771 -2.6706 16 6 8.6051 -6.1800 -2.1015 17 7 9.5132 -5.4058 -1.5488 18 14 9.0791 -7.8740 -2.7299 19 1 8.8002 -7.9578 -4.1861 20 1 10.5263 -8.1041 -2.4895 21 1 8.2877 -8.9068 -2.0142 22 6 2.0417 -0.7170 -1.2669 23 1 -0.3632 0.5187 0.8871 24 1 -0.3633 0.5089 -0.8928 25 1 -0.3633 -1.0277 0.0057 26 1 3.1247 1.4483 -0.0108 27 1 1.6607 1.9600 -0.8845 28 1 1.6784 1.9537 0.8954 29 1 2.1868 -1.7607 1.0153 30 1 1.2948 -0.6054 2.0347 31 1 3.4631 -0.2305 2.7513 32 1 3.3017 0.9956 1.4889 33 1 4.5832 -1.6961 1.1615 34 1 5.4296 -0.1526 1.4136 35 1 5.4285 -0.5555 -0.9775 36 1 4.2221 0.7188 -0.6799 37 1 5.7276 -2.2382 -1.0569 38 1 5.2241 -4.1994 -3.0260 39 1 4.8491 -4.8958 -1.4316 40 1 7.5012 -3.6167 -2.2352 41 1 7.1256 -4.3133 -0.6408 42 1 10.4293 -5.7144 -1.4678 43 1 1.9704 -0.0369 -2.1157 44 1 1.4143 -1.5873 -1.4591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335686184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:45 Heat of formation + Delta-G solvation = -34.665265 kcal Electronic energy + Delta-G solvation = -21600.400862 eV Core-core repulsion = 18552.601167 eV Total energy + Delta-G solvation = -3047.799695 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.74576 -38.48356 -35.05948 -34.69516 -33.41233 -32.70270 -29.53614 -28.45386 -27.62139 -26.20116 -24.79228 -24.15516 -21.47865 -20.82936 -19.44713 -18.56495 -17.63196 -16.80480 -16.23594 -15.80014 -14.98070 -14.76780 -14.49939 -14.38021 -13.97982 -13.58128 -13.40716 -13.26648 -13.03076 -12.73964 -12.37747 -12.26953 -12.18572 -11.99751 -11.39750 -11.33066 -11.11844 -10.98901 -10.82915 -10.62739 -10.61390 -10.42359 -10.27209 -10.17189 -9.75780 -9.48155 -9.23408 -8.62996 -8.41970 -8.11052 -6.06682 -4.09176 3.00087 3.33270 3.36773 3.40616 3.62115 4.30676 4.44766 4.54639 4.55973 4.68948 4.77579 4.85858 5.08656 5.28026 5.30344 5.32752 5.36398 5.43969 5.51426 5.56116 5.66454 5.69904 5.78856 5.90734 5.92951 5.96554 6.03508 6.10899 6.17453 6.24334 6.33889 6.38774 6.44465 6.77649 6.82469 7.06981 7.24135 7.59299 7.66641 7.92596 8.28914 8.45029 8.95607 9.05578 9.55374 11.04984 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037531 B = 0.003766 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.872288 B = 7433.522878 C = 7817.309673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 C -0.156 4.156 4 C -0.105 4.105 5 C -0.131 4.131 6 C -0.142 4.142 7 C 0.103 3.897 8 N -0.625 5.625 9 C 0.696 3.304 10 O -0.599 6.599 11 N -0.738 5.738 12 C 0.139 3.861 13 C 0.014 3.986 14 C -0.521 4.521 15 H 0.059 0.941 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.140 3.860 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.393 0.607 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.021 0.979 41 H 0.021 0.979 42 H 0.262 0.738 43 H 0.056 0.944 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.430 16.077 6.193 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.077 4.077 3 C -0.213 4.213 4 C -0.142 4.142 5 C -0.168 4.168 6 C -0.181 4.181 7 C -0.021 4.021 8 N -0.362 5.362 9 C 0.398 3.602 10 O -0.478 6.478 11 N -0.393 5.393 12 C 0.016 3.984 13 C -0.024 4.024 14 C -0.559 4.559 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 C 0.017 3.983 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.228 0.772 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.039 0.961 41 H 0.040 0.960 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.840 15.543 5.849 21.618 hybrid contribution 0.769 -0.615 -0.017 0.985 sum -13.071 14.928 5.832 20.681 Atomic orbital electron populations 1.21864 0.93825 1.02133 1.01772 1.20720 0.95752 0.95655 0.95591 1.22407 1.02149 0.95284 1.01444 1.21115 0.96482 1.00479 0.96167 1.20659 0.94544 1.01782 0.99832 1.21328 0.98489 1.02513 0.95724 1.21688 0.91466 0.96055 0.92883 1.46817 1.09384 1.15875 1.64094 1.16097 0.83460 0.81312 0.79362 1.90862 1.49838 1.56089 1.51051 1.45711 1.08099 1.20388 1.65122 1.21578 0.98820 0.80033 0.97978 1.19309 0.87912 0.97534 0.97598 1.21021 0.94621 1.00577 1.39715 0.92286 1.24986 0.96475 0.97631 0.95158 1.69946 1.02604 1.36756 1.44090 0.86575 0.77264 0.84228 0.79477 1.20114 1.21274 1.20114 1.21769 0.81288 0.99613 0.95588 0.92393 0.92533 0.92312 0.90738 0.92929 0.92515 0.91519 0.92088 0.92762 0.90658 0.91394 0.90854 0.90723 0.89685 0.77168 0.92869 0.92880 0.96059 0.96035 0.92835 0.92573 0.89184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.15 37.16 0.30 -0.82 16 2 C -0.08 -0.71 0.75 -154.89 -0.12 -0.83 16 3 C -0.16 -1.20 6.75 37.16 0.25 -0.95 16 4 C -0.10 -1.06 4.90 -28.02 -0.14 -1.20 16 5 C -0.13 -1.20 4.99 -29.79 -0.15 -1.35 16 6 C -0.14 -1.46 5.74 -28.58 -0.16 -1.62 16 7 C 0.10 1.13 5.06 -4.08 -0.02 1.11 16 8 N -0.62 -8.65 2.23 -178.05 -0.40 -9.05 16 9 C 0.70 12.85 8.22 -86.93 -0.71 12.13 16 10 O -0.60 -13.33 15.62 5.28 0.08 -13.24 16 11 N -0.74 -13.73 5.39 -65.23 -0.35 -14.08 16 12 C 0.14 3.08 5.61 -4.04 -0.02 3.06 16 13 C 0.01 0.35 5.09 -27.88 -0.14 0.21 16 14 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 15 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 18 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.14 1.71 5.02 -2.76 -0.01 1.70 16 23 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.57 3.16 -51.93 -0.16 0.41 16 27 H 0.05 0.38 8.13 -51.93 -0.42 -0.04 16 28 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 29 H 0.07 0.86 7.49 -51.93 -0.39 0.47 16 30 H 0.06 0.56 7.74 -51.93 -0.40 0.15 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.59 4.66 -51.93 -0.24 0.35 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.83 6.23 -51.93 -0.32 0.51 16 36 H 0.09 0.76 5.21 -51.93 -0.27 0.49 16 37 H 0.39 6.46 6.09 -40.82 -0.25 6.21 16 38 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.06 0.64 7.98 -51.93 -0.41 0.22 16 44 H 0.09 1.30 6.78 -51.93 -0.35 0.95 16 LS Contribution 331.01 15.07 4.99 4.99 Total: -1.00 -31.73 331.01 -8.70 -40.44 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.40 Total: 1.90 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.34 Total: -1.93 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.01 Total: -48.69 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.24 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.73 -8.70 -40.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335686184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.771 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds