Wall clock time and date at job start Mon Mar 30 2020 01:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.26235 * 2 1 4 4 C 1.50880 * 109.37016 * 119.68611 * 2 1 3 5 5 C 1.52568 * 109.36179 * 212.07991 * 4 2 1 6 6 C 1.47095 * 114.32405 * 274.98845 * 5 4 2 7 7 C 1.54863 * 110.32536 * 62.79556 * 6 5 4 8 8 N 1.44581 * 109.60209 * 288.73778 * 7 6 5 9 9 C 1.34770 * 118.63930 * 270.70319 * 8 7 6 10 10 O 1.21593 * 119.99857 * 180.02562 * 9 8 7 11 11 N 1.34774 * 120.00425 * 359.97438 * 9 8 7 12 12 C 1.46504 * 120.00175 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47212 * 180.02562 * 12 11 9 14 14 C 1.50699 * 109.47258 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99651 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99839 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00331 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99726 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47376 * 59.99698 * 18 16 14 20 20 H 1.48500 * 109.47054 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47283 * 299.99426 * 18 16 14 22 22 C 1.47598 * 122.71418 * 90.98419 * 8 7 6 23 23 H 1.08993 * 109.46764 * 300.31476 * 1 2 3 24 24 H 1.08993 * 109.46828 * 60.31567 * 1 2 3 25 25 H 1.09000 * 109.46835 * 180.31609 * 1 2 3 26 26 H 1.09002 * 109.47035 * 180.60349 * 3 2 1 27 27 H 1.09002 * 109.47316 * 300.60806 * 3 2 1 28 28 H 1.09004 * 109.46943 * 60.60443 * 3 2 1 29 29 H 1.09001 * 109.49402 * 92.10942 * 4 2 1 30 30 H 1.09000 * 109.48848 * 332.04425 * 4 2 1 31 31 H 1.08998 * 108.51588 * 153.73060 * 5 4 2 32 32 H 1.09000 * 108.50999 * 36.23404 * 5 4 2 33 33 H 1.09005 * 109.32489 * 302.53642 * 6 5 4 34 34 H 1.08997 * 109.19033 * 182.97623 * 6 5 4 35 35 H 1.09000 * 109.44762 * 168.69694 * 7 6 5 36 36 H 1.09005 * 109.42554 * 48.76242 * 7 6 5 37 37 H 0.97000 * 120.00297 * 0.02562 * 11 9 8 38 38 H 1.08997 * 109.46827 * 60.00638 * 12 11 9 39 39 H 1.08991 * 109.47749 * 300.00562 * 12 11 9 40 40 H 1.09004 * 109.46629 * 300.00374 * 13 12 11 41 41 H 1.08997 * 109.47083 * 60.00330 * 13 12 11 42 42 H 0.97002 * 120.00014 * 180.02562 * 17 16 14 43 43 H 1.08997 * 108.95062 * 78.29283 * 22 8 7 44 44 H 1.08998 * 108.94861 * 196.92499 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0348 1.4443 0.0000 4 6 2.0304 -0.7049 1.2366 5 6 3.3488 -0.0768 1.6783 6 6 4.5358 -0.6192 0.9997 7 6 4.4645 -0.3319 -0.5204 8 7 3.4427 -1.1585 -1.1229 9 6 3.7849 -2.3806 -1.5767 10 8 2.9453 -3.0961 -2.0882 11 7 5.0577 -2.8091 -1.4646 12 6 5.4295 -4.1377 -1.9574 13 6 6.9206 -4.3748 -1.7096 14 6 7.3031 -5.7413 -2.2171 15 1 6.5572 -6.3771 -2.6706 16 6 8.6051 -6.1800 -2.1015 17 7 9.5132 -5.4058 -1.5488 18 14 9.0791 -7.8740 -2.7299 19 1 8.8002 -7.9578 -4.1861 20 1 10.5263 -8.1041 -2.4895 21 1 8.2877 -8.9068 -2.0142 22 6 2.0417 -0.7170 -1.2669 23 1 -0.3632 0.5187 0.8871 24 1 -0.3633 0.5089 -0.8928 25 1 -0.3633 -1.0277 0.0057 26 1 3.1247 1.4483 -0.0108 27 1 1.6607 1.9600 -0.8845 28 1 1.6784 1.9537 0.8954 29 1 2.1868 -1.7607 1.0153 30 1 1.2948 -0.6054 2.0347 31 1 3.4631 -0.2305 2.7513 32 1 3.3017 0.9956 1.4889 33 1 4.5832 -1.6961 1.1615 34 1 5.4296 -0.1526 1.4136 35 1 5.4285 -0.5555 -0.9775 36 1 4.2221 0.7188 -0.6799 37 1 5.7276 -2.2382 -1.0569 38 1 5.2241 -4.1994 -3.0260 39 1 4.8491 -4.8958 -1.4316 40 1 7.5012 -3.6167 -2.2352 41 1 7.1256 -4.3133 -0.6408 42 1 10.4293 -5.7144 -1.4678 43 1 1.9704 -0.0369 -2.1157 44 1 1.4143 -1.5873 -1.4591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335686184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:44 Heat of formation + Delta-G solvation = -53.577561 kcal Electronic energy + Delta-G solvation = -21601.220960 eV Core-core repulsion = 18552.601167 eV Total energy + Delta-G solvation = -3048.619794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.88629 -39.69611 -36.67881 -35.94794 -34.70088 -34.38740 -31.44059 -29.27604 -28.27748 -27.55103 -26.19575 -25.42887 -23.05099 -22.20510 -20.78589 -19.43500 -18.88077 -18.51388 -17.70465 -16.97511 -16.50995 -16.25531 -16.00693 -15.41400 -15.14813 -14.99240 -14.61973 -14.33298 -14.12971 -14.09122 -13.70978 -13.25876 -13.17351 -12.95289 -12.93585 -12.79417 -12.53353 -12.23841 -12.22925 -12.07613 -11.67287 -11.64993 -11.48204 -11.43024 -11.25178 -11.10234 -10.76516 -10.60088 -10.14553 -9.43180 -8.23940 -6.34526 1.41676 1.44383 1.52108 1.71310 2.13945 2.40987 3.04734 3.10627 3.65669 3.78927 3.89132 3.98181 4.01705 4.27780 4.40582 4.49291 4.49981 4.53718 4.58162 4.68542 4.77839 4.79033 4.83760 4.86848 4.90930 5.06305 5.16248 5.20396 5.23617 5.26133 5.30835 5.35150 5.43426 5.45205 5.50756 5.57664 5.62660 5.72337 5.78817 5.95061 6.16748 6.77783 7.01363 7.34659 7.56937 8.87861 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037531 B = 0.003766 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.872288 B = 7433.522878 C = 7817.309673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 C -0.153 4.153 4 C -0.105 4.105 5 C -0.131 4.131 6 C -0.138 4.138 7 C 0.095 3.905 8 N -0.612 5.612 9 C 0.692 3.308 10 O -0.642 6.642 11 N -0.733 5.733 12 C 0.160 3.840 13 C 0.027 3.973 14 C -0.549 4.549 15 H 0.058 0.942 16 C 0.009 3.991 17 N -0.926 5.926 18 Si 0.965 3.035 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.269 1.269 22 C 0.136 3.864 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.036 0.964 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.404 0.596 38 H 0.042 0.958 39 H 0.040 0.960 40 H 0.008 0.992 41 H 0.007 0.993 42 H 0.266 0.734 43 H 0.069 0.931 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.655 17.790 6.723 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.070 4.070 3 C -0.209 4.209 4 C -0.142 4.142 5 C -0.167 4.167 6 C -0.176 4.176 7 C -0.027 4.027 8 N -0.347 5.347 9 C 0.393 3.607 10 O -0.525 6.525 11 N -0.390 5.390 12 C 0.035 3.965 13 C -0.011 4.011 14 C -0.587 4.587 15 H 0.076 0.924 16 C -0.190 4.190 17 N -0.565 5.565 18 Si 0.790 3.210 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.194 1.194 22 C 0.013 3.987 23 H 0.093 0.907 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.055 0.945 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.134 0.866 37 H 0.242 0.758 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.027 0.973 41 H 0.026 0.974 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.070 17.315 6.406 23.213 hybrid contribution 0.805 -1.095 -0.154 1.367 sum -13.265 16.221 6.252 21.867 Atomic orbital electron populations 1.21861 0.92837 1.01662 1.03049 1.20689 0.96473 0.96498 0.93354 1.22368 1.02146 0.93583 1.02793 1.21118 0.97677 0.98397 0.97043 1.20675 0.93217 1.02929 0.99919 1.21309 1.00198 1.00796 0.95324 1.21996 0.90486 0.97108 0.93143 1.46873 1.10779 1.14323 1.62759 1.16275 0.82656 0.82480 0.79299 1.90826 1.50828 1.57790 1.53050 1.45413 1.08846 1.19358 1.65346 1.21068 0.96629 0.81624 0.97157 1.19098 0.89468 0.96309 0.96196 1.21424 0.95184 1.01831 1.40272 0.92385 1.25857 0.96317 1.01704 0.95126 1.70049 1.03029 1.38624 1.44793 0.85496 0.77198 0.79237 0.79106 1.19340 1.20431 1.19395 1.21973 0.79766 0.98929 0.98003 0.90683 0.91648 0.93746 0.90579 0.92034 0.90827 0.95234 0.90818 0.92243 0.88243 0.94501 0.88767 0.90971 0.86559 0.75828 0.93956 0.94187 0.97325 0.97440 0.92489 0.91238 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.15 71.98 0.59 -1.39 16 2 C -0.07 -1.16 0.75 -52.43 -0.04 -1.20 16 3 C -0.15 -1.75 6.75 71.98 0.49 -1.27 16 4 C -0.10 -1.99 4.90 29.76 0.15 -1.84 16 5 C -0.13 -2.09 4.99 28.61 0.14 -1.95 16 6 C -0.14 -2.63 5.74 29.39 0.17 -2.47 16 7 C 0.10 1.93 5.06 87.37 0.44 2.37 16 8 N -0.61 -16.84 2.23 -835.49 -1.86 -18.70 16 9 C 0.69 26.27 8.22 179.06 1.47 27.74 16 10 O -0.64 -29.80 15.62 -4.01 -0.06 -29.87 16 11 N -0.73 -28.11 5.39 -478.54 -2.58 -30.69 16 12 C 0.16 7.35 5.61 86.38 0.48 7.83 16 13 C 0.03 1.40 5.09 29.85 0.15 1.55 16 14 C -0.55 -31.37 9.11 25.60 0.23 -31.14 16 15 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 16 C 0.01 0.50 5.46 84.65 0.46 0.97 16 17 N -0.93 -54.68 13.29 21.45 0.28 -54.40 16 18 Si 0.97 44.13 29.54 68.60 2.03 46.15 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 C 0.14 3.25 5.02 86.61 0.44 3.68 16 23 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.08 0.84 3.16 -2.39 -0.01 0.83 16 27 H 0.06 0.64 8.13 -2.39 -0.02 0.63 16 28 H 0.07 0.66 7.90 -2.38 -0.02 0.64 16 29 H 0.03 0.78 7.49 -2.39 -0.02 0.76 16 30 H 0.07 1.21 7.74 -2.39 -0.02 1.19 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 1.16 4.66 -2.39 -0.01 1.15 16 33 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.52 6.23 -2.39 -0.01 1.51 16 36 H 0.12 1.69 5.21 -2.38 -0.01 1.67 16 37 H 0.40 13.53 6.09 -92.71 -0.56 12.97 16 38 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.27 14.78 8.31 -92.71 -0.77 14.00 16 43 H 0.07 1.48 7.98 -2.39 -0.02 1.46 16 44 H 0.06 1.83 6.78 -2.39 -0.02 1.81 16 Total: -1.00 -69.81 331.01 3.39 -66.42 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.41 Total: 18.18 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 5.17 Total: 2.90 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -4.16 Total: -103.79 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.06 Total: -29.87 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -69.81 3.39 -66.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335686184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.842 kcal (2) G-P(sol) polarization free energy of solvation -69.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds