Wall clock time and date at job start Mon Mar 30 2020 01:36:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52998 * 109.26235 * 2 1
4 4 C 1.50880 * 109.37016 * 119.68611 * 2 1 3
5 5 C 1.52568 * 109.36179 * 212.07991 * 4 2 1
6 6 C 1.47095 * 114.32405 * 274.98845 * 5 4 2
7 7 C 1.54863 * 110.32536 * 62.79556 * 6 5 4
8 8 N 1.44581 * 109.60209 * 288.73778 * 7 6 5
9 9 C 1.34770 * 118.63930 * 270.70319 * 8 7 6
10 10 O 1.21593 * 119.99857 * 180.02562 * 9 8 7
11 11 N 1.34774 * 120.00425 * 359.97438 * 9 8 7
12 12 C 1.46504 * 120.00175 * 179.97438 * 11 9 8
13 13 C 1.53005 * 109.47212 * 180.02562 * 12 11 9
14 14 C 1.50699 * 109.47258 * 180.02562 * 13 12 11
15 15 H 1.07998 * 119.99651 * 359.97438 * 14 13 12
16 16 C 1.37873 * 119.99839 * 180.02562 * 14 13 12
17 17 N 1.31511 * 120.00331 * 359.97438 * 16 14 13
18 18 Si 1.86801 * 119.99726 * 179.97438 * 16 14 13
19 19 H 1.48500 * 109.47376 * 59.99698 * 18 16 14
20 20 H 1.48500 * 109.47054 * 179.97438 * 18 16 14
21 21 H 1.48499 * 109.47283 * 299.99426 * 18 16 14
22 22 C 1.47598 * 122.71418 * 90.98419 * 8 7 6
23 23 H 1.08993 * 109.46764 * 300.31476 * 1 2 3
24 24 H 1.08993 * 109.46828 * 60.31567 * 1 2 3
25 25 H 1.09000 * 109.46835 * 180.31609 * 1 2 3
26 26 H 1.09002 * 109.47035 * 180.60349 * 3 2 1
27 27 H 1.09002 * 109.47316 * 300.60806 * 3 2 1
28 28 H 1.09004 * 109.46943 * 60.60443 * 3 2 1
29 29 H 1.09001 * 109.49402 * 92.10942 * 4 2 1
30 30 H 1.09000 * 109.48848 * 332.04425 * 4 2 1
31 31 H 1.08998 * 108.51588 * 153.73060 * 5 4 2
32 32 H 1.09000 * 108.50999 * 36.23404 * 5 4 2
33 33 H 1.09005 * 109.32489 * 302.53642 * 6 5 4
34 34 H 1.08997 * 109.19033 * 182.97623 * 6 5 4
35 35 H 1.09000 * 109.44762 * 168.69694 * 7 6 5
36 36 H 1.09005 * 109.42554 * 48.76242 * 7 6 5
37 37 H 0.97000 * 120.00297 * 0.02562 * 11 9 8
38 38 H 1.08997 * 109.46827 * 60.00638 * 12 11 9
39 39 H 1.08991 * 109.47749 * 300.00562 * 12 11 9
40 40 H 1.09004 * 109.46629 * 300.00374 * 13 12 11
41 41 H 1.08997 * 109.47083 * 60.00330 * 13 12 11
42 42 H 0.97002 * 120.00014 * 180.02562 * 17 16 14
43 43 H 1.08997 * 108.95062 * 78.29283 * 22 8 7
44 44 H 1.08998 * 108.94861 * 196.92499 * 22 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0348 1.4443 0.0000
4 6 2.0304 -0.7049 1.2366
5 6 3.3488 -0.0768 1.6783
6 6 4.5358 -0.6192 0.9997
7 6 4.4645 -0.3319 -0.5204
8 7 3.4427 -1.1585 -1.1229
9 6 3.7849 -2.3806 -1.5767
10 8 2.9453 -3.0961 -2.0882
11 7 5.0577 -2.8091 -1.4646
12 6 5.4295 -4.1377 -1.9574
13 6 6.9206 -4.3748 -1.7096
14 6 7.3031 -5.7413 -2.2171
15 1 6.5572 -6.3771 -2.6706
16 6 8.6051 -6.1800 -2.1015
17 7 9.5132 -5.4058 -1.5488
18 14 9.0791 -7.8740 -2.7299
19 1 8.8002 -7.9578 -4.1861
20 1 10.5263 -8.1041 -2.4895
21 1 8.2877 -8.9068 -2.0142
22 6 2.0417 -0.7170 -1.2669
23 1 -0.3632 0.5187 0.8871
24 1 -0.3633 0.5089 -0.8928
25 1 -0.3633 -1.0277 0.0057
26 1 3.1247 1.4483 -0.0108
27 1 1.6607 1.9600 -0.8845
28 1 1.6784 1.9537 0.8954
29 1 2.1868 -1.7607 1.0153
30 1 1.2948 -0.6054 2.0347
31 1 3.4631 -0.2305 2.7513
32 1 3.3017 0.9956 1.4889
33 1 4.5832 -1.6961 1.1615
34 1 5.4296 -0.1526 1.4136
35 1 5.4285 -0.5555 -0.9775
36 1 4.2221 0.7188 -0.6799
37 1 5.7276 -2.2382 -1.0569
38 1 5.2241 -4.1994 -3.0260
39 1 4.8491 -4.8958 -1.4316
40 1 7.5012 -3.6167 -2.2352
41 1 7.1256 -4.3133 -0.6408
42 1 10.4293 -5.7144 -1.4678
43 1 1.9704 -0.0369 -2.1157
44 1 1.4143 -1.5873 -1.4591
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000335686184.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:36:44
Heat of formation + Delta-G solvation = -53.577561 kcal
Electronic energy + Delta-G solvation = -21601.220960 eV
Core-core repulsion = 18552.601167 eV
Total energy + Delta-G solvation = -3048.619794 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-41.88629 -39.69611 -36.67881 -35.94794 -34.70088 -34.38740 -31.44059 -29.27604
-28.27748 -27.55103 -26.19575 -25.42887 -23.05099 -22.20510 -20.78589 -19.43500
-18.88077 -18.51388 -17.70465 -16.97511 -16.50995 -16.25531 -16.00693 -15.41400
-15.14813 -14.99240 -14.61973 -14.33298 -14.12971 -14.09122 -13.70978 -13.25876
-13.17351 -12.95289 -12.93585 -12.79417 -12.53353 -12.23841 -12.22925 -12.07613
-11.67287 -11.64993 -11.48204 -11.43024 -11.25178 -11.10234 -10.76516 -10.60088
-10.14553 -9.43180 -8.23940 -6.34526 1.41676 1.44383 1.52108 1.71310
2.13945 2.40987 3.04734 3.10627 3.65669 3.78927 3.89132 3.98181
4.01705 4.27780 4.40582 4.49291 4.49981 4.53718 4.58162 4.68542
4.77839 4.79033 4.83760 4.86848 4.90930 5.06305 5.16248 5.20396
5.23617 5.26133 5.30835 5.35150 5.43426 5.45205 5.50756 5.57664
5.62660 5.72337 5.78817 5.95061 6.16748 6.77783 7.01363 7.34659
7.56937 8.87861
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.037531 B = 0.003766 C = 0.003581
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 745.872288 B = 7433.522878 C = 7817.309673
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.069 4.069
3 C -0.153 4.153
4 C -0.105 4.105
5 C -0.131 4.131
6 C -0.138 4.138
7 C 0.095 3.905
8 N -0.612 5.612
9 C 0.692 3.308
10 O -0.642 6.642
11 N -0.733 5.733
12 C 0.160 3.840
13 C 0.027 3.973
14 C -0.549 4.549
15 H 0.058 0.942
16 C 0.009 3.991
17 N -0.926 5.926
18 Si 0.965 3.035
19 H -0.268 1.268
20 H -0.279 1.279
21 H -0.269 1.269
22 C 0.136 3.864
23 H 0.074 0.926
24 H 0.064 0.936
25 H 0.043 0.957
26 H 0.076 0.924
27 H 0.061 0.939
28 H 0.073 0.927
29 H 0.029 0.971
30 H 0.073 0.927
31 H 0.059 0.941
32 H 0.099 0.901
33 H 0.036 0.964
34 H 0.094 0.906
35 H 0.072 0.928
36 H 0.117 0.883
37 H 0.404 0.596
38 H 0.042 0.958
39 H 0.040 0.960
40 H 0.008 0.992
41 H 0.007 0.993
42 H 0.266 0.734
43 H 0.069 0.931
44 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.655 17.790 6.723 23.412
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.070 4.070
3 C -0.209 4.209
4 C -0.142 4.142
5 C -0.167 4.167
6 C -0.176 4.176
7 C -0.027 4.027
8 N -0.347 5.347
9 C 0.393 3.607
10 O -0.525 6.525
11 N -0.390 5.390
12 C 0.035 3.965
13 C -0.011 4.011
14 C -0.587 4.587
15 H 0.076 0.924
16 C -0.190 4.190
17 N -0.565 5.565
18 Si 0.790 3.210
19 H -0.193 1.193
20 H -0.204 1.204
21 H -0.194 1.194
22 C 0.013 3.987
23 H 0.093 0.907
24 H 0.084 0.916
25 H 0.063 0.937
26 H 0.094 0.906
27 H 0.080 0.920
28 H 0.092 0.908
29 H 0.048 0.952
30 H 0.092 0.908
31 H 0.078 0.922
32 H 0.118 0.882
33 H 0.055 0.945
34 H 0.112 0.888
35 H 0.090 0.910
36 H 0.134 0.866
37 H 0.242 0.758
38 H 0.060 0.940
39 H 0.058 0.942
40 H 0.027 0.973
41 H 0.026 0.974
42 H 0.075 0.925
43 H 0.088 0.912
44 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -14.070 17.315 6.406 23.213
hybrid contribution 0.805 -1.095 -0.154 1.367
sum -13.265 16.221 6.252 21.867
Atomic orbital electron populations
1.21861 0.92837 1.01662 1.03049 1.20689 0.96473 0.96498 0.93354
1.22368 1.02146 0.93583 1.02793 1.21118 0.97677 0.98397 0.97043
1.20675 0.93217 1.02929 0.99919 1.21309 1.00198 1.00796 0.95324
1.21996 0.90486 0.97108 0.93143 1.46873 1.10779 1.14323 1.62759
1.16275 0.82656 0.82480 0.79299 1.90826 1.50828 1.57790 1.53050
1.45413 1.08846 1.19358 1.65346 1.21068 0.96629 0.81624 0.97157
1.19098 0.89468 0.96309 0.96196 1.21424 0.95184 1.01831 1.40272
0.92385 1.25857 0.96317 1.01704 0.95126 1.70049 1.03029 1.38624
1.44793 0.85496 0.77198 0.79237 0.79106 1.19340 1.20431 1.19395
1.21973 0.79766 0.98929 0.98003 0.90683 0.91648 0.93746 0.90579
0.92034 0.90827 0.95234 0.90818 0.92243 0.88243 0.94501 0.88767
0.90971 0.86559 0.75828 0.93956 0.94187 0.97325 0.97440 0.92489
0.91238 0.92114
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.98 8.15 71.98 0.59 -1.39 16
2 C -0.07 -1.16 0.75 -52.43 -0.04 -1.20 16
3 C -0.15 -1.75 6.75 71.98 0.49 -1.27 16
4 C -0.10 -1.99 4.90 29.76 0.15 -1.84 16
5 C -0.13 -2.09 4.99 28.61 0.14 -1.95 16
6 C -0.14 -2.63 5.74 29.39 0.17 -2.47 16
7 C 0.10 1.93 5.06 87.37 0.44 2.37 16
8 N -0.61 -16.84 2.23 -835.49 -1.86 -18.70 16
9 C 0.69 26.27 8.22 179.06 1.47 27.74 16
10 O -0.64 -29.80 15.62 -4.01 -0.06 -29.87 16
11 N -0.73 -28.11 5.39 -478.54 -2.58 -30.69 16
12 C 0.16 7.35 5.61 86.38 0.48 7.83 16
13 C 0.03 1.40 5.09 29.85 0.15 1.55 16
14 C -0.55 -31.37 9.11 25.60 0.23 -31.14 16
15 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16
16 C 0.01 0.50 5.46 84.65 0.46 0.97 16
17 N -0.93 -54.68 13.29 21.45 0.28 -54.40 16
18 Si 0.97 44.13 29.54 68.60 2.03 46.15 16
19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16
20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16
21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16
22 C 0.14 3.25 5.02 86.61 0.44 3.68 16
23 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16
24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16
25 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16
26 H 0.08 0.84 3.16 -2.39 -0.01 0.83 16
27 H 0.06 0.64 8.13 -2.39 -0.02 0.63 16
28 H 0.07 0.66 7.90 -2.38 -0.02 0.64 16
29 H 0.03 0.78 7.49 -2.39 -0.02 0.76 16
30 H 0.07 1.21 7.74 -2.39 -0.02 1.19 16
31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
32 H 0.10 1.16 4.66 -2.39 -0.01 1.15 16
33 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16
34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16
35 H 0.07 1.52 6.23 -2.39 -0.01 1.51 16
36 H 0.12 1.69 5.21 -2.38 -0.01 1.67 16
37 H 0.40 13.53 6.09 -92.71 -0.56 12.97 16
38 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16
39 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16
40 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16
41 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16
42 H 0.27 14.78 8.31 -92.71 -0.77 14.00 16
43 H 0.07 1.48 7.98 -2.39 -0.02 1.46 16
44 H 0.06 1.83 6.78 -2.39 -0.02 1.81 16
Total: -1.00 -69.81 331.01 3.39 -66.42
By element:
Atomic # 1 Polarization: 17.77 SS G_CDS: 0.41 Total: 18.18 kcal
Atomic # 6 Polarization: -2.28 SS G_CDS: 5.17 Total: 2.90 kcal
Atomic # 7 Polarization: -99.63 SS G_CDS: -4.16 Total: -103.79 kcal
Atomic # 8 Polarization: -29.80 SS G_CDS: -0.06 Total: -29.87 kcal
Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal
Total: -69.81 3.39 -66.42 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000335686184.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.842 kcal
(2) G-P(sol) polarization free energy of solvation -69.810 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.968 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.420 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.578 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds