Wall clock time and date at job start Mon Mar 30 2020 01:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53143 * 1 3 3 C 1.54472 * 107.34598 * 2 1 4 4 C 1.52708 * 109.87481 * 116.77249 * 2 1 3 5 5 N 1.46616 * 109.85709 * 77.51950 * 4 2 1 6 6 C 1.34791 * 120.99104 * 235.44284 * 5 4 2 7 7 O 1.21590 * 119.99837 * 174.64655 * 6 5 4 8 8 N 1.34772 * 120.00378 * 354.35975 * 6 5 4 9 9 C 1.46504 * 120.00262 * 184.98799 * 8 6 5 10 10 C 1.50698 * 109.47249 * 180.02562 * 9 8 6 11 11 H 1.07995 * 119.99870 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99914 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00096 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99908 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47156 * 90.00282 * 14 12 10 16 16 H 1.48506 * 109.47032 * 210.00067 * 14 12 10 17 17 H 1.48493 * 109.47123 * 329.99987 * 14 12 10 18 18 C 1.46614 * 118.01247 * 56.12830 * 5 4 2 19 19 C 1.52729 * 109.78081 * 303.71385 * 18 5 4 20 20 C 1.53120 * 109.87898 * 282.82158 * 19 18 5 21 21 C 1.54465 * 107.65276 * 166.19736 * 19 18 5 22 22 C 1.51741 * 111.25996 * 242.02187 * 2 1 3 23 23 H 1.09002 * 109.46938 * 308.47561 * 1 2 3 24 24 H 1.09000 * 109.46558 * 68.46952 * 1 2 3 25 25 H 1.08995 * 109.46750 * 188.47106 * 1 2 3 26 26 H 1.08996 * 109.47214 * 178.22985 * 3 2 1 27 27 H 1.09002 * 109.47260 * 298.23309 * 3 2 1 28 28 H 1.09004 * 109.46688 * 58.23264 * 3 2 1 29 29 H 1.09249 * 109.58332 * 317.24139 * 4 2 1 30 30 H 1.09242 * 109.59824 * 197.83891 * 4 2 1 31 31 H 0.97001 * 120.00209 * 4.99601 * 8 6 5 32 32 H 1.09006 * 109.47320 * 300.00712 * 9 8 6 33 33 H 1.09003 * 109.46743 * 60.00327 * 9 8 6 34 34 H 0.96999 * 120.00197 * 179.97438 * 13 12 10 35 35 H 1.09239 * 109.47543 * 64.04732 * 18 5 4 36 36 H 1.09229 * 109.47904 * 183.36488 * 18 5 4 37 37 H 1.08997 * 109.47239 * 179.97438 * 20 19 18 38 38 H 1.09004 * 109.47081 * 299.95130 * 20 19 18 39 39 H 1.09001 * 109.47283 * 59.94820 * 20 19 18 40 40 H 1.08994 * 109.47387 * 298.35625 * 21 19 18 41 41 H 1.09002 * 109.46629 * 58.35511 * 21 19 18 42 42 H 1.09002 * 109.47355 * 178.35025 * 21 19 18 43 43 H 1.10299 * 108.55335 * 43.69018 * 22 2 1 44 44 H 1.10298 * 108.52494 * 158.30897 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5314 0.0000 0.0000 3 6 1.9920 1.4745 0.0000 4 6 2.0506 -0.6469 1.2822 5 7 1.9396 -2.1056 1.1843 6 6 1.2681 -2.8145 2.1135 7 8 1.1038 -4.0100 1.9646 8 7 0.7839 -2.1993 3.2105 9 6 0.1504 -2.9857 4.2719 10 6 -0.3022 -2.0660 5.3766 11 1 -0.1351 -1.0021 5.2959 12 6 -0.9296 -2.5829 6.4903 13 7 -1.3241 -1.7803 7.4546 14 14 -1.2192 -4.4230 6.6294 15 1 -0.0547 -5.0583 7.2971 16 1 -2.4451 -4.6721 7.4297 17 1 -1.3880 -5.0016 5.2723 18 6 2.5939 -2.7716 0.0538 19 6 2.0846 -2.1809 -1.2593 20 6 0.6933 -2.7369 -1.5754 21 6 3.0347 -2.6495 -2.3834 22 6 2.0816 -0.6634 -1.2489 23 1 -0.3633 0.6394 0.8046 24 1 -0.3632 0.3772 -0.9560 25 1 -0.3632 -1.0164 0.1514 26 1 3.0807 1.5150 0.0317 27 1 1.6363 1.9662 -0.9054 28 1 1.5838 1.9825 0.8738 29 1 1.4644 -0.2939 2.1338 30 1 3.0965 -0.3706 1.4345 31 1 0.8546 -1.2357 3.2972 32 1 -0.7106 -3.5168 3.8661 33 1 0.8672 -3.7049 4.6682 34 1 -1.7658 -2.1439 8.2379 35 1 3.6748 -2.6305 0.1239 36 1 2.3738 -3.8411 0.0842 37 1 0.3362 -2.3109 -2.5130 38 1 0.7478 -3.8217 -1.6670 39 1 0.0058 -2.4743 -0.7714 40 1 4.0391 -2.2728 -2.1908 41 1 3.0544 -3.7390 -2.4117 42 1 2.6808 -2.2676 -3.3410 43 1 1.5043 -0.3076 -2.1187 44 1 3.1144 -0.3100 -1.4074 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336105833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:24 Heat of formation + Delta-G solvation = -47.056060 kcal Electronic energy + Delta-G solvation = -22088.518009 eV Core-core repulsion = 19040.181009 eV Total energy + Delta-G solvation = -3048.337000 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.46249 -38.21445 -35.32058 -34.14856 -33.77610 -32.21042 -28.15244 -27.82182 -26.77466 -26.69565 -26.54071 -25.16917 -21.93968 -20.06625 -19.74091 -18.29823 -17.72951 -16.39166 -15.94581 -15.37373 -14.73785 -14.61187 -14.42746 -14.16919 -14.00601 -13.53187 -13.42303 -13.08782 -12.56396 -12.38387 -12.25832 -12.17259 -12.13196 -12.03530 -11.83810 -11.67021 -11.57264 -11.02612 -10.93022 -10.84749 -10.73897 -10.70150 -10.39924 -10.17996 -9.92870 -9.45863 -9.40264 -8.74167 -8.40541 -7.87126 -6.18009 -4.19470 3.18517 3.30253 3.37231 3.46343 3.80789 4.36694 4.38960 4.62265 4.66483 4.71604 4.85739 4.97375 5.07040 5.17845 5.26244 5.43884 5.48778 5.53734 5.56909 5.61532 5.69137 5.69492 5.75874 5.84494 5.86664 5.90812 5.92454 5.98090 6.06231 6.15906 6.19286 6.29763 6.31375 6.51703 6.72284 6.91083 7.16306 7.31026 7.45937 7.58969 8.30003 8.71815 8.83914 9.26026 9.44445 10.94016 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026183 B = 0.005120 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.141985 B = 5467.487219 C = 6107.537291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C -0.144 4.144 4 C 0.123 3.877 5 N -0.630 5.630 6 C 0.701 3.299 7 O -0.602 6.602 8 N -0.723 5.723 9 C 0.238 3.762 10 C -0.540 4.540 11 H 0.078 0.922 12 C 0.078 3.922 13 N -0.894 5.894 14 Si 0.876 3.124 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.260 1.260 18 C 0.141 3.859 19 C -0.073 4.073 20 C -0.138 4.138 21 C -0.143 4.143 22 C -0.088 4.088 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.391 0.609 32 H 0.023 0.977 33 H 0.017 0.983 34 H 0.267 0.733 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.070 4.705 -19.045 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 C -0.202 4.202 4 C -0.002 4.002 5 N -0.367 5.367 6 C 0.402 3.598 7 O -0.481 6.481 8 N -0.377 5.377 9 C 0.115 3.885 10 C -0.578 4.578 11 H 0.096 0.904 12 C -0.126 4.126 13 N -0.531 5.531 14 Si 0.703 3.297 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.184 1.184 18 C 0.017 3.983 19 C -0.075 4.075 20 C -0.195 4.195 21 C -0.200 4.200 22 C -0.126 4.126 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.227 0.773 32 H 0.041 0.959 33 H 0.035 0.965 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.838 3.812 -18.901 20.814 hybrid contribution -0.159 -0.283 0.253 0.412 sum 7.679 3.529 -18.647 20.473 Atomic orbital electron populations 1.22009 0.93946 1.02550 1.01483 1.20739 0.96391 0.95126 0.95127 1.22253 1.00941 0.94924 1.02066 1.21534 1.00956 0.80431 0.97242 1.46964 1.57269 1.06188 1.26327 1.15979 0.78596 0.85044 0.80146 1.90843 1.64686 1.13626 1.78984 1.45554 1.62294 1.10811 1.19088 1.19350 0.92429 0.91944 0.84764 1.21084 1.39653 0.95252 1.01855 0.90402 1.24770 0.94456 0.98241 0.95084 1.69881 1.39616 1.35227 1.08413 0.86822 0.78179 0.85547 0.79191 1.19882 1.20963 1.18420 1.21304 0.95153 0.98445 0.83378 1.20759 0.96408 0.95061 0.95227 1.21944 0.95991 1.00543 1.01041 1.22226 0.98695 1.01333 0.97789 1.21246 1.01033 0.93600 0.96694 0.92405 0.92884 0.91986 0.92678 0.92557 0.92187 0.90098 0.91841 0.77348 0.95915 0.96521 0.92317 0.92479 0.89022 0.93199 0.92707 0.91994 0.92734 0.92412 0.92630 0.92274 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 7.98 37.23 0.30 -1.35 16 2 C -0.07 -0.76 0.77 -154.45 -0.12 -0.88 16 3 C -0.14 -1.24 8.03 37.93 0.30 -0.93 16 4 C 0.12 1.53 5.05 -4.13 -0.02 1.51 16 5 N -0.63 -9.77 2.92 -179.16 -0.52 -10.29 16 6 C 0.70 14.36 8.30 -86.91 -0.72 13.64 16 7 O -0.60 -14.52 15.79 5.29 0.08 -14.44 16 8 N -0.72 -15.47 5.46 -66.41 -0.36 -15.84 16 9 C 0.24 6.04 4.50 -5.19 -0.02 6.02 16 10 C -0.54 -15.04 9.83 -34.44 -0.34 -15.38 16 11 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 12 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 13 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 14 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 15 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 18 C 0.14 1.89 5.08 -4.12 -0.02 1.87 16 19 C -0.07 -0.79 0.77 -154.45 -0.12 -0.91 16 20 C -0.14 -1.63 8.04 37.22 0.30 -1.34 16 21 C -0.14 -1.23 8.07 37.93 0.31 -0.93 16 22 C -0.09 -0.85 3.40 -28.00 -0.10 -0.95 16 23 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 24 H 0.05 0.54 7.99 -51.93 -0.41 0.12 16 25 H 0.06 0.86 5.91 -51.93 -0.31 0.55 16 26 H 0.05 0.43 8.06 -51.93 -0.42 0.01 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 29 H 0.08 1.07 5.54 -51.79 -0.29 0.78 16 30 H 0.06 0.71 8.01 -51.79 -0.42 0.30 16 31 H 0.39 7.50 5.82 -40.82 -0.24 7.26 16 32 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 33 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 34 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.06 0.68 8.04 -51.79 -0.42 0.26 16 36 H 0.09 1.42 6.92 -51.80 -0.36 1.06 16 37 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.88 5.75 -51.93 -0.30 0.58 16 40 H 0.05 0.43 8.05 -51.93 -0.42 0.01 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.54 7.89 -51.19 -0.40 0.14 16 44 H 0.06 0.51 7.66 -51.19 -0.39 0.11 16 LS Contribution 335.07 15.07 5.05 5.05 Total: -1.00 -31.81 335.07 -7.66 -39.47 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.66 Total: 2.37 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -0.35 Total: 2.52 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.11 Total: -52.07 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.08 Total: -14.44 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.81 -7.66 -39.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336105833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.584 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds