Wall clock time and date at job start Mon Mar 30 2020 01:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53143 * 1 3 3 C 1.54472 * 107.34598 * 2 1 4 4 C 1.52708 * 109.87481 * 116.77249 * 2 1 3 5 5 N 1.46616 * 109.85709 * 77.51950 * 4 2 1 6 6 C 1.34791 * 120.99104 * 235.44284 * 5 4 2 7 7 O 1.21590 * 119.99837 * 174.64655 * 6 5 4 8 8 N 1.34772 * 120.00378 * 354.35975 * 6 5 4 9 9 C 1.46504 * 120.00262 * 184.98799 * 8 6 5 10 10 C 1.50698 * 109.47249 * 180.02562 * 9 8 6 11 11 H 1.07995 * 119.99870 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99914 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00096 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99908 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47156 * 90.00282 * 14 12 10 16 16 H 1.48506 * 109.47032 * 210.00067 * 14 12 10 17 17 H 1.48493 * 109.47123 * 329.99987 * 14 12 10 18 18 C 1.46614 * 118.01247 * 56.12830 * 5 4 2 19 19 C 1.52729 * 109.78081 * 303.71385 * 18 5 4 20 20 C 1.53120 * 109.87898 * 282.82158 * 19 18 5 21 21 C 1.54465 * 107.65276 * 166.19736 * 19 18 5 22 22 C 1.51741 * 111.25996 * 242.02187 * 2 1 3 23 23 H 1.09002 * 109.46938 * 308.47561 * 1 2 3 24 24 H 1.09000 * 109.46558 * 68.46952 * 1 2 3 25 25 H 1.08995 * 109.46750 * 188.47106 * 1 2 3 26 26 H 1.08996 * 109.47214 * 178.22985 * 3 2 1 27 27 H 1.09002 * 109.47260 * 298.23309 * 3 2 1 28 28 H 1.09004 * 109.46688 * 58.23264 * 3 2 1 29 29 H 1.09249 * 109.58332 * 317.24139 * 4 2 1 30 30 H 1.09242 * 109.59824 * 197.83891 * 4 2 1 31 31 H 0.97001 * 120.00209 * 4.99601 * 8 6 5 32 32 H 1.09006 * 109.47320 * 300.00712 * 9 8 6 33 33 H 1.09003 * 109.46743 * 60.00327 * 9 8 6 34 34 H 0.96999 * 120.00197 * 179.97438 * 13 12 10 35 35 H 1.09239 * 109.47543 * 64.04732 * 18 5 4 36 36 H 1.09229 * 109.47904 * 183.36488 * 18 5 4 37 37 H 1.08997 * 109.47239 * 179.97438 * 20 19 18 38 38 H 1.09004 * 109.47081 * 299.95130 * 20 19 18 39 39 H 1.09001 * 109.47283 * 59.94820 * 20 19 18 40 40 H 1.08994 * 109.47387 * 298.35625 * 21 19 18 41 41 H 1.09002 * 109.46629 * 58.35511 * 21 19 18 42 42 H 1.09002 * 109.47355 * 178.35025 * 21 19 18 43 43 H 1.10299 * 108.55335 * 43.69018 * 22 2 1 44 44 H 1.10298 * 108.52494 * 158.30897 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5314 0.0000 0.0000 3 6 1.9920 1.4745 0.0000 4 6 2.0506 -0.6469 1.2822 5 7 1.9396 -2.1056 1.1843 6 6 1.2681 -2.8145 2.1135 7 8 1.1038 -4.0100 1.9646 8 7 0.7839 -2.1993 3.2105 9 6 0.1504 -2.9857 4.2719 10 6 -0.3022 -2.0660 5.3766 11 1 -0.1351 -1.0021 5.2959 12 6 -0.9296 -2.5829 6.4903 13 7 -1.3241 -1.7803 7.4546 14 14 -1.2192 -4.4230 6.6294 15 1 -0.0547 -5.0583 7.2971 16 1 -2.4451 -4.6721 7.4297 17 1 -1.3880 -5.0016 5.2723 18 6 2.5939 -2.7716 0.0538 19 6 2.0846 -2.1809 -1.2593 20 6 0.6933 -2.7369 -1.5754 21 6 3.0347 -2.6495 -2.3834 22 6 2.0816 -0.6634 -1.2489 23 1 -0.3633 0.6394 0.8046 24 1 -0.3632 0.3772 -0.9560 25 1 -0.3632 -1.0164 0.1514 26 1 3.0807 1.5150 0.0317 27 1 1.6363 1.9662 -0.9054 28 1 1.5838 1.9825 0.8738 29 1 1.4644 -0.2939 2.1338 30 1 3.0965 -0.3706 1.4345 31 1 0.8546 -1.2357 3.2972 32 1 -0.7106 -3.5168 3.8661 33 1 0.8672 -3.7049 4.6682 34 1 -1.7658 -2.1439 8.2379 35 1 3.6748 -2.6305 0.1239 36 1 2.3738 -3.8411 0.0842 37 1 0.3362 -2.3109 -2.5130 38 1 0.7478 -3.8217 -1.6670 39 1 0.0058 -2.4743 -0.7714 40 1 4.0391 -2.2728 -2.1908 41 1 3.0544 -3.7390 -2.4117 42 1 2.6808 -2.2676 -3.3410 43 1 1.5043 -0.3076 -2.1187 44 1 3.1144 -0.3100 -1.4074 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336105833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:24 Heat of formation + Delta-G solvation = -67.263574 kcal Electronic energy + Delta-G solvation = -22089.394273 eV Core-core repulsion = 19040.181009 eV Total energy + Delta-G solvation = -3049.213264 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.70142 -39.57714 -36.47038 -35.82496 -35.09467 -34.24977 -30.05238 -28.72869 -27.68675 -27.49664 -27.46215 -26.50324 -23.91308 -21.41275 -20.88061 -19.79445 -18.83162 -18.38410 -17.39812 -16.67511 -16.39159 -15.75005 -15.69982 -15.27823 -15.22489 -14.99309 -14.72015 -14.42871 -14.18948 -14.05906 -13.24862 -13.13789 -13.01887 -12.98086 -12.89093 -12.86743 -12.70335 -12.57657 -12.40229 -11.93779 -11.90176 -11.80241 -11.64678 -11.62864 -11.29629 -11.08744 -10.99699 -10.91958 -10.08195 -9.32572 -8.40283 -6.46894 1.32324 1.34134 1.48063 1.79343 2.18739 2.28361 2.95219 3.12925 3.59688 3.79031 3.82728 3.93956 4.05747 4.21140 4.33486 4.51895 4.62645 4.68865 4.72406 4.75432 4.78387 4.83396 4.89609 4.91826 4.94012 5.01183 5.04057 5.08503 5.09566 5.15486 5.23567 5.29462 5.35096 5.37770 5.46653 5.49888 5.52135 5.55768 5.68462 5.99005 6.21816 6.53944 7.09976 7.19836 7.65573 8.74482 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026183 B = 0.005120 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.141985 B = 5467.487219 C = 6107.537291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 C -0.138 4.138 4 C 0.115 3.885 5 N -0.619 5.619 6 C 0.698 3.302 7 O -0.643 6.643 8 N -0.724 5.724 9 C 0.253 3.747 10 C -0.544 4.544 11 H 0.058 0.942 12 C 0.030 3.970 13 N -0.930 5.930 14 Si 0.936 3.064 15 H -0.264 1.264 16 H -0.271 1.271 17 H -0.264 1.264 18 C 0.136 3.864 19 C -0.069 4.069 20 C -0.136 4.136 21 C -0.137 4.137 22 C -0.088 4.088 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.032 0.968 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.401 0.599 32 H 0.007 0.993 33 H 0.008 0.992 34 H 0.273 0.727 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.042 0.958 39 H 0.032 0.968 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.478 5.476 -21.004 23.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 C -0.196 4.196 4 C -0.008 4.008 5 N -0.355 5.355 6 C 0.399 3.601 7 O -0.526 6.526 8 N -0.380 5.380 9 C 0.128 3.872 10 C -0.582 4.582 11 H 0.076 0.924 12 C -0.170 4.170 13 N -0.568 5.568 14 Si 0.760 3.240 15 H -0.188 1.188 16 H -0.196 1.196 17 H -0.188 1.188 18 C 0.013 3.987 19 C -0.070 4.070 20 C -0.193 4.193 21 C -0.194 4.194 22 C -0.126 4.126 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.051 0.949 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.238 0.762 32 H 0.025 0.975 33 H 0.026 0.974 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.278 4.637 -20.899 23.331 hybrid contribution -0.585 -0.449 0.816 1.100 sum 8.693 4.189 -20.083 22.281 Atomic orbital electron populations 1.21999 0.95129 1.00590 1.02108 1.20722 0.95342 0.96552 0.94371 1.22200 1.01808 0.92978 1.02586 1.21834 1.02270 0.78345 0.98339 1.46983 1.55586 1.07484 1.25426 1.16104 0.78743 0.84709 0.80522 1.90804 1.66297 1.15596 1.79944 1.45297 1.62636 1.11088 1.18933 1.18930 0.91751 0.91495 0.85001 1.21230 1.39572 0.94734 1.02695 0.92410 1.25537 0.94192 1.02540 0.94770 1.69972 1.40504 1.37210 1.09146 0.85879 0.78809 0.80295 0.79038 1.18836 1.19594 1.18837 1.21551 0.96230 0.97052 0.83902 1.20737 0.95959 0.96005 0.94314 1.21931 0.96453 1.00031 1.00914 1.22175 0.98783 1.01147 0.97319 1.21245 1.02572 0.92272 0.96461 0.93066 0.91271 0.94920 0.91283 0.91235 0.92634 0.91312 0.89586 0.76175 0.97547 0.97422 0.91791 0.90256 0.91769 0.91242 0.93885 0.94855 0.91270 0.92916 0.91145 0.90859 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 7.98 72.03 0.58 -2.54 16 2 C -0.07 -1.27 0.77 -52.14 -0.04 -1.32 16 3 C -0.14 -1.90 8.03 72.48 0.58 -1.32 16 4 C 0.11 2.71 5.05 86.26 0.44 3.15 16 5 N -0.62 -18.97 2.92 -838.99 -2.45 -21.42 16 6 C 0.70 29.23 8.30 179.05 1.49 30.72 16 7 O -0.64 -32.08 15.79 -4.00 -0.06 -32.14 16 8 N -0.72 -31.78 5.46 -482.27 -2.63 -34.42 16 9 C 0.25 13.12 4.50 85.63 0.39 13.51 16 10 C -0.54 -30.97 9.83 25.60 0.25 -30.71 16 11 H 0.06 3.44 7.84 -2.91 -0.02 3.42 16 12 C 0.03 1.73 5.47 84.66 0.46 2.20 16 13 N -0.93 -56.10 13.96 21.45 0.30 -55.80 16 14 Si 0.94 45.18 27.47 68.60 1.88 47.06 16 15 H -0.26 -12.25 7.11 99.48 0.71 -11.55 16 16 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 17 H -0.26 -12.84 6.54 99.48 0.65 -12.19 16 18 C 0.14 3.48 5.08 86.27 0.44 3.92 16 19 C -0.07 -1.33 0.77 -52.14 -0.04 -1.37 16 20 C -0.14 -3.13 8.04 72.02 0.58 -2.55 16 21 C -0.14 -1.92 8.07 72.48 0.58 -1.34 16 22 C -0.09 -1.39 3.40 29.77 0.10 -1.29 16 23 H 0.05 1.17 8.08 -2.39 -0.02 1.15 16 24 H 0.07 1.28 7.99 -2.39 -0.02 1.26 16 25 H 0.03 0.91 5.91 -2.39 -0.01 0.90 16 26 H 0.07 0.79 8.06 -2.39 -0.02 0.77 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.05 0.83 8.12 -2.38 -0.02 0.81 16 29 H 0.07 1.79 5.54 -2.26 -0.01 1.78 16 30 H 0.09 1.69 8.01 -2.26 -0.02 1.67 16 31 H 0.40 15.77 5.82 -92.71 -0.54 15.23 16 32 H 0.01 0.36 7.20 -2.38 -0.02 0.35 16 33 H 0.01 0.42 7.57 -2.39 -0.02 0.40 16 34 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.08 1.70 8.04 -2.26 -0.02 1.68 16 36 H 0.06 2.02 6.92 -2.27 -0.02 2.01 16 37 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 38 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.03 0.95 5.75 -2.39 -0.01 0.94 16 40 H 0.07 0.80 8.05 -2.39 -0.02 0.78 16 41 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 1.02 7.89 -1.69 -0.01 1.01 16 44 H 0.08 0.98 7.66 -1.69 -0.01 0.97 16 Total: -1.00 -70.02 335.07 3.22 -66.80 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.38 Total: 18.87 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 5.80 Total: 11.05 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -4.79 Total: -111.64 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.06 Total: -32.14 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.06 kcal Total: -70.02 3.22 -66.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336105833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.463 kcal (2) G-P(sol) polarization free energy of solvation -70.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds