Wall clock time and date at job start Mon Mar 30 2020 01:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00396 * 2 1 4 4 H 1.48492 * 109.47278 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46868 * 300.00626 * 3 2 1 6 6 H 1.48509 * 109.46779 * 60.00104 * 3 2 1 7 7 C 1.37879 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00317 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00003 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47279 * 180.02562 * 9 7 2 11 11 C 1.46955 * 110.99810 * 170.00572 * 10 9 7 12 12 C 1.53050 * 109.36018 * 183.18855 * 11 10 9 13 13 N 1.46954 * 109.36591 * 301.59296 * 12 11 10 14 14 C 1.46898 * 111.00537 * 183.19318 * 13 12 11 15 15 C 1.52997 * 109.47522 * 170.00214 * 14 13 12 16 16 C 1.53175 * 109.54337 * 174.99926 * 15 14 13 17 17 C 1.53092 * 109.16344 * 176.84735 * 16 15 14 18 18 O 1.42905 * 109.41215 * 302.38824 * 17 16 15 19 19 C 1.42905 * 114.09831 * 61.16158 * 18 17 16 20 20 C 1.53098 * 109.41155 * 298.83847 * 19 18 17 21 21 C 1.46958 * 110.88103 * 59.32300 * 13 12 11 22 22 C 1.46960 * 110.99440 * 293.79870 * 10 9 7 23 23 H 0.96998 * 119.99736 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47173 * 60.00389 * 9 7 2 25 25 H 1.09003 * 109.47018 * 300.00603 * 9 7 2 26 26 H 1.08990 * 109.49739 * 63.21964 * 11 10 9 27 27 H 1.09001 * 109.50640 * 303.15951 * 11 10 9 28 28 H 1.09004 * 109.48748 * 181.62429 * 12 11 10 29 29 H 1.08999 * 109.49274 * 61.56462 * 12 11 10 30 30 H 1.09001 * 109.47125 * 49.99669 * 14 13 12 31 31 H 1.09010 * 109.46768 * 290.00178 * 14 13 12 32 32 H 1.08996 * 109.54194 * 54.82130 * 15 14 13 33 33 H 1.09004 * 109.52714 * 56.93754 * 16 15 14 34 34 H 1.09001 * 109.57654 * 296.78485 * 16 15 14 35 35 H 1.08997 * 109.48111 * 182.40965 * 17 16 15 36 36 H 1.09000 * 109.48212 * 62.37239 * 17 16 15 37 37 H 1.09000 * 109.47932 * 58.81878 * 19 18 17 38 38 H 1.08993 * 109.48024 * 178.86013 * 19 18 17 39 39 H 1.08996 * 109.52270 * 297.70307 * 20 19 18 40 40 H 1.08995 * 109.57012 * 177.54155 * 20 19 18 41 41 H 1.09002 * 109.48859 * 60.64396 * 21 13 12 42 42 H 1.08992 * 109.49331 * 180.71475 * 21 13 12 43 43 H 1.08997 * 109.49170 * 296.77417 * 22 10 9 44 44 H 1.09002 * 109.48712 * 56.85045 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5208 -4.8940 0.2376 12 6 2.5563 -6.0187 0.3092 13 7 3.3193 -6.0593 -0.9460 14 6 4.2739 -7.1758 -0.9462 15 6 4.8669 -7.3398 -2.3470 16 6 5.9524 -8.4202 -2.3207 17 6 6.4845 -8.6327 -3.7403 18 8 5.4041 -8.9934 -4.6034 19 6 4.3815 -8.0003 -4.7045 20 6 3.7649 -7.7624 -3.3235 21 6 4.0041 -4.7810 -1.1843 22 6 2.9686 -3.6562 -1.2559 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5570 0.8897 26 1 0.8253 -5.0915 -0.5780 27 1 0.9730 -4.8437 1.1786 28 1 2.0484 -6.9718 0.4570 29 1 3.2354 -5.8354 1.1418 30 1 3.7599 -8.0933 -0.6595 31 1 5.0738 -6.9700 -0.2348 32 1 5.3011 -6.3944 -2.6721 33 1 5.5294 -9.3527 -1.9468 34 1 6.7674 -8.1033 -1.6699 35 1 7.2270 -9.4306 -3.7346 36 1 6.9436 -7.7111 -4.0982 37 1 4.8131 -7.0705 -5.0750 38 1 3.6092 -8.3426 -5.3932 39 1 3.2977 -8.6815 -2.9700 40 1 3.0148 -6.9744 -3.3894 41 1 4.6997 -4.5835 -0.3686 42 1 4.5517 -4.8316 -2.1253 43 1 2.2895 -3.8396 -2.0885 44 1 3.4765 -2.7031 -1.4036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336688355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:00 Heat of formation + Delta-G solvation = -47.657123 kcal Electronic energy + Delta-G solvation = -21316.867034 eV Core-core repulsion = 18268.503969 eV Total energy + Delta-G solvation = -3048.363064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.76368 -38.51212 -35.72656 -33.60148 -32.27750 -31.20873 -30.42730 -28.63794 -26.53933 -24.54639 -23.66018 -23.19100 -22.13545 -21.27003 -19.97401 -19.12154 -16.36510 -16.25067 -16.18855 -15.87397 -15.12275 -14.83165 -14.59440 -14.45990 -14.19575 -13.93979 -13.76635 -13.31061 -13.04319 -12.51800 -12.35610 -12.16059 -11.87995 -11.64163 -11.44560 -11.23559 -11.11943 -10.86350 -10.73576 -10.68141 -10.53961 -10.37002 -10.27809 -10.24946 -9.75567 -9.56620 -9.16224 -8.44508 -8.10694 -7.22025 -6.03048 -4.04431 3.30234 3.37622 3.42245 3.73255 4.01957 4.42012 4.56632 4.72347 4.73279 4.90156 4.95456 5.09257 5.21747 5.28034 5.32497 5.35713 5.43418 5.50722 5.54823 5.57802 5.63923 5.76825 5.77569 5.81503 5.85728 5.91335 5.97163 6.07779 6.16175 6.20121 6.31096 6.44860 6.60594 6.68855 7.04726 7.20219 7.26869 7.35946 7.39148 7.80271 8.09494 8.21489 8.55659 9.03478 9.59902 11.07909 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030591 B = 0.003715 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.072504 B = 7535.258415 C = 7870.238560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.539 5.539 11 C 0.057 3.943 12 C 0.062 3.938 13 N -0.537 5.537 14 C 0.062 3.938 15 C -0.087 4.087 16 C -0.151 4.151 17 C 0.062 3.938 18 O -0.387 6.387 19 C 0.058 3.942 20 C -0.140 4.140 21 C 0.056 3.944 22 C 0.068 3.932 23 H 0.261 0.739 24 H -0.009 1.009 25 H 0.029 0.971 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.070 0.930 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.028 0.972 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.157 -16.895 -5.410 20.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.264 5.264 11 C -0.072 4.072 12 C -0.066 4.066 13 N -0.262 5.262 14 C -0.066 4.066 15 C -0.105 4.105 16 C -0.189 4.189 17 C -0.014 4.014 18 O -0.306 6.306 19 C -0.019 4.019 20 C -0.177 4.177 21 C -0.072 4.072 22 C -0.061 4.061 23 H 0.070 0.930 24 H 0.009 0.991 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.055 0.945 42 H 0.088 0.912 43 H 0.046 0.954 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.982 -16.935 -5.495 20.412 hybrid contribution 0.326 1.254 0.276 1.325 sum 10.309 -15.681 -5.219 19.478 Atomic orbital electron populations 1.69968 1.06065 1.26645 1.51122 1.24993 0.94856 0.99307 0.95474 0.86457 0.80057 0.83484 0.77515 1.19691 1.21102 1.21014 1.21194 0.93466 0.89968 1.49890 0.91908 1.19704 0.90060 0.87334 0.96093 1.62282 1.28135 1.02749 1.33222 1.22053 0.94751 0.90005 1.00406 1.22138 0.96073 0.98462 0.89944 1.62144 1.25835 1.03318 1.34886 1.22090 0.94237 0.94699 0.95560 1.21217 0.95356 0.98347 0.95612 1.22224 0.99049 0.99867 0.97771 1.22530 0.89151 1.00529 0.89235 1.87906 1.32618 1.43662 1.66451 1.22656 0.90296 0.91658 0.97250 1.22105 0.98495 1.02618 0.94502 1.22285 0.96134 0.88752 0.99997 1.21982 0.95435 0.97394 0.91262 0.92984 0.99075 0.95267 0.95186 0.91108 0.91323 0.94448 0.91132 0.95069 0.90837 0.91075 0.91080 0.89168 0.93328 0.93330 0.89061 0.91522 0.89518 0.94512 0.91186 0.95398 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.51 -14.26 8.47 -34.44 -0.29 -14.55 16 8 H 0.06 1.75 7.13 -52.49 -0.37 1.38 16 9 C 0.19 5.08 4.72 -4.98 -0.02 5.06 16 10 N -0.54 -11.76 4.70 -235.91 -1.11 -12.87 16 11 C 0.06 1.05 5.61 -3.77 -0.02 1.03 16 12 C 0.06 0.94 5.61 -3.77 -0.02 0.91 16 13 N -0.54 -7.71 4.25 -234.46 -1.00 -8.71 16 14 C 0.06 0.72 4.35 -3.83 -0.02 0.71 16 15 C -0.09 -0.90 2.20 -90.44 -0.20 -1.10 16 16 C -0.15 -1.33 5.42 -26.59 -0.14 -1.47 16 17 C 0.06 0.55 6.84 37.20 0.25 0.81 16 18 O -0.39 -4.32 10.77 -35.23 -0.38 -4.70 16 19 C 0.06 0.58 6.84 37.21 0.25 0.83 16 20 C -0.14 -1.48 5.28 -26.59 -0.14 -1.62 16 21 C 0.06 0.88 5.42 -3.76 -0.02 0.86 16 22 C 0.07 1.34 5.43 -3.76 -0.02 1.31 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 24 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 25 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 28 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.78 8.03 -51.93 -0.42 0.36 16 31 H 0.03 0.37 8.12 -51.92 -0.42 -0.06 16 32 H 0.07 0.81 6.28 -51.93 -0.33 0.49 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.04 7.87 -51.93 -0.41 0.63 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.97 6.24 -51.93 -0.32 0.65 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.08 1.79 6.79 -51.93 -0.35 1.43 16 LS Contribution 336.12 15.07 5.07 5.07 Total: -1.00 -30.06 336.12 -10.28 -40.34 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -8.09 Total: -3.93 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -0.49 Total: -5.74 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -1.37 Total: -47.64 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.38 Total: -4.70 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.06 -10.28 -40.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336688355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.315 kcal (2) G-P(sol) polarization free energy of solvation -30.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds