Wall clock time and date at job start Mon Mar 30 2020 01:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00396 * 2 1 4 4 H 1.48492 * 109.47278 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46868 * 300.00626 * 3 2 1 6 6 H 1.48509 * 109.46779 * 60.00104 * 3 2 1 7 7 C 1.37879 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00317 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00003 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.47279 * 180.02562 * 9 7 2 11 11 C 1.46955 * 110.99810 * 170.00572 * 10 9 7 12 12 C 1.53050 * 109.36018 * 183.18855 * 11 10 9 13 13 N 1.46954 * 109.36591 * 301.59296 * 12 11 10 14 14 C 1.46898 * 111.00537 * 183.19318 * 13 12 11 15 15 C 1.52997 * 109.47522 * 170.00214 * 14 13 12 16 16 C 1.53175 * 109.54337 * 174.99926 * 15 14 13 17 17 C 1.53092 * 109.16344 * 176.84735 * 16 15 14 18 18 O 1.42905 * 109.41215 * 302.38824 * 17 16 15 19 19 C 1.42905 * 114.09831 * 61.16158 * 18 17 16 20 20 C 1.53098 * 109.41155 * 298.83847 * 19 18 17 21 21 C 1.46958 * 110.88103 * 59.32300 * 13 12 11 22 22 C 1.46960 * 110.99440 * 293.79870 * 10 9 7 23 23 H 0.96998 * 119.99736 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47173 * 60.00389 * 9 7 2 25 25 H 1.09003 * 109.47018 * 300.00603 * 9 7 2 26 26 H 1.08990 * 109.49739 * 63.21964 * 11 10 9 27 27 H 1.09001 * 109.50640 * 303.15951 * 11 10 9 28 28 H 1.09004 * 109.48748 * 181.62429 * 12 11 10 29 29 H 1.08999 * 109.49274 * 61.56462 * 12 11 10 30 30 H 1.09001 * 109.47125 * 49.99669 * 14 13 12 31 31 H 1.09010 * 109.46768 * 290.00178 * 14 13 12 32 32 H 1.08996 * 109.54194 * 54.82130 * 15 14 13 33 33 H 1.09004 * 109.52714 * 56.93754 * 16 15 14 34 34 H 1.09001 * 109.57654 * 296.78485 * 16 15 14 35 35 H 1.08997 * 109.48111 * 182.40965 * 17 16 15 36 36 H 1.09000 * 109.48212 * 62.37239 * 17 16 15 37 37 H 1.09000 * 109.47932 * 58.81878 * 19 18 17 38 38 H 1.08993 * 109.48024 * 178.86013 * 19 18 17 39 39 H 1.08996 * 109.52270 * 297.70307 * 20 19 18 40 40 H 1.08995 * 109.57012 * 177.54155 * 20 19 18 41 41 H 1.09002 * 109.48859 * 60.64396 * 21 13 12 42 42 H 1.08992 * 109.49331 * 180.71475 * 21 13 12 43 43 H 1.08997 * 109.49170 * 296.77417 * 22 10 9 44 44 H 1.09002 * 109.48712 * 56.85045 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5208 -4.8940 0.2376 12 6 2.5563 -6.0187 0.3092 13 7 3.3193 -6.0593 -0.9460 14 6 4.2739 -7.1758 -0.9462 15 6 4.8669 -7.3398 -2.3470 16 6 5.9524 -8.4202 -2.3207 17 6 6.4845 -8.6327 -3.7403 18 8 5.4041 -8.9934 -4.6034 19 6 4.3815 -8.0003 -4.7045 20 6 3.7649 -7.7624 -3.3235 21 6 4.0041 -4.7810 -1.1843 22 6 2.9686 -3.6562 -1.2559 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5570 0.8897 26 1 0.8253 -5.0915 -0.5780 27 1 0.9730 -4.8437 1.1786 28 1 2.0484 -6.9718 0.4570 29 1 3.2354 -5.8354 1.1418 30 1 3.7599 -8.0933 -0.6595 31 1 5.0738 -6.9700 -0.2348 32 1 5.3011 -6.3944 -2.6721 33 1 5.5294 -9.3527 -1.9468 34 1 6.7674 -8.1033 -1.6699 35 1 7.2270 -9.4306 -3.7346 36 1 6.9436 -7.7111 -4.0982 37 1 4.8131 -7.0705 -5.0750 38 1 3.6092 -8.3426 -5.3932 39 1 3.2977 -8.6815 -2.9700 40 1 3.0148 -6.9744 -3.3894 41 1 4.6997 -4.5835 -0.3686 42 1 4.5517 -4.8316 -2.1253 43 1 2.2895 -3.8396 -2.0885 44 1 3.4765 -2.7031 -1.4036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336688355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:59 Heat of formation + Delta-G solvation = -68.379964 kcal Electronic energy + Delta-G solvation = -21317.765643 eV Core-core repulsion = 18268.503969 eV Total energy + Delta-G solvation = -3049.261674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.71551 -39.73641 -37.07715 -35.06315 -34.02137 -31.96435 -31.82865 -30.19471 -28.04583 -26.00123 -24.66299 -24.38897 -23.54940 -22.69607 -20.88186 -20.51157 -18.49998 -17.34265 -17.08004 -16.87592 -16.45254 -16.09744 -15.84883 -15.63148 -15.55223 -15.40245 -15.10049 -14.72767 -14.17958 -14.02196 -13.49288 -13.44909 -13.17907 -12.93470 -12.78304 -12.69490 -12.47879 -12.26333 -12.20634 -12.18163 -12.05670 -11.69636 -11.51020 -11.26751 -11.17878 -11.08435 -10.63781 -10.39867 -9.28758 -9.03286 -8.22081 -6.32677 1.40334 1.40782 1.54578 2.39224 2.89654 3.03459 3.10227 3.29357 3.72173 3.90306 3.94492 4.05048 4.16617 4.20065 4.28705 4.35531 4.39746 4.46069 4.47283 4.55854 4.67958 4.71373 4.76092 4.82906 4.86020 4.92096 4.94500 4.99365 5.00772 5.04812 5.06235 5.20806 5.23852 5.26726 5.34738 5.47215 5.62693 6.00703 6.08320 6.13815 6.31751 6.34903 6.61528 6.83544 7.37355 8.89499 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030591 B = 0.003715 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.072504 B = 7535.258415 C = 7870.238560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.063 0.937 9 C 0.208 3.792 10 N -0.545 5.545 11 C 0.055 3.945 12 C 0.072 3.928 13 N -0.543 5.543 14 C 0.066 3.934 15 C -0.084 4.084 16 C -0.144 4.144 17 C 0.057 3.943 18 O -0.405 6.405 19 C 0.058 3.942 20 C -0.134 4.134 21 C 0.071 3.929 22 C 0.070 3.930 23 H 0.265 0.735 24 H -0.041 1.041 25 H 0.003 0.997 26 H 0.020 0.980 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.034 0.966 42 H 0.092 0.908 43 H 0.015 0.985 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.206 -17.787 -5.463 22.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.081 0.919 9 C 0.082 3.918 10 N -0.270 5.270 11 C -0.074 4.074 12 C -0.056 4.056 13 N -0.268 5.268 14 C -0.061 4.061 15 C -0.103 4.103 16 C -0.182 4.182 17 C -0.019 4.019 18 O -0.324 6.324 19 C -0.018 4.018 20 C -0.172 4.172 21 C -0.057 4.057 22 C -0.059 4.059 23 H 0.074 0.926 24 H -0.023 1.023 25 H 0.021 0.979 26 H 0.038 0.962 27 H 0.088 0.912 28 H 0.115 0.885 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.125 0.875 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.116 0.884 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.052 0.948 42 H 0.110 0.890 43 H 0.033 0.967 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.050 -17.858 -5.550 22.246 hybrid contribution -0.348 1.470 0.280 1.536 sum 11.702 -16.388 -5.270 20.815 Atomic orbital electron populations 1.70096 1.07808 1.27893 1.51772 1.25943 0.95752 1.03293 0.94721 0.85305 0.78962 0.78411 0.77762 1.18633 1.20347 1.20349 1.21472 0.93573 0.91009 1.50072 0.91905 1.19353 0.90103 0.89091 0.93242 1.62223 1.27257 1.03049 1.34463 1.22154 0.95761 0.89607 0.99887 1.22052 0.95316 0.98006 0.90271 1.62125 1.26714 1.03452 1.34476 1.22143 0.93819 0.93686 0.96485 1.21195 0.95652 0.98760 0.94665 1.22173 0.98804 0.99208 0.98040 1.22708 0.88900 1.01456 0.88881 1.87888 1.33231 1.44204 1.67082 1.22674 0.90425 0.91716 0.97030 1.22026 0.98237 1.01868 0.95087 1.22100 0.94565 0.87995 1.01079 1.21970 0.95711 0.98447 0.89768 0.92647 1.02328 0.97906 0.96151 0.91238 0.88529 0.94522 0.89998 0.94469 0.91360 0.90948 0.89713 0.87538 0.92893 0.93116 0.88412 0.91707 0.91124 0.94809 0.89008 0.96690 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.02 13.29 21.45 0.28 -56.73 16 2 C 0.00 0.05 5.46 84.66 0.46 0.51 16 3 Si 0.97 44.51 29.54 68.60 2.03 46.54 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.52 -30.14 8.47 25.60 0.22 -29.92 16 8 H 0.06 3.55 7.13 -2.91 -0.02 3.52 16 9 C 0.21 11.47 4.72 85.56 0.40 11.88 16 10 N -0.54 -24.37 4.70 -900.27 -4.23 -28.60 16 11 C 0.05 2.02 5.61 86.31 0.48 2.51 16 12 C 0.07 2.04 5.61 86.31 0.48 2.53 16 13 N -0.54 -14.59 4.25 -895.70 -3.81 -18.40 16 14 C 0.07 1.34 4.35 86.30 0.38 1.72 16 15 C -0.08 -1.53 2.20 -10.68 -0.02 -1.56 16 16 C -0.14 -2.11 5.42 30.68 0.17 -1.94 16 17 C 0.06 0.86 6.84 72.01 0.49 1.36 16 18 O -0.40 -8.23 10.77 -148.98 -1.60 -9.83 16 19 C 0.06 1.07 6.84 72.01 0.49 1.57 16 20 C -0.13 -2.63 5.28 30.69 0.16 -2.46 16 21 C 0.07 2.13 5.42 86.31 0.47 2.60 16 22 C 0.07 2.77 5.43 86.31 0.47 3.24 16 23 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 24 H -0.04 -2.46 8.12 -2.39 -0.02 -2.48 16 25 H 0.00 0.17 8.03 -2.39 -0.02 0.15 16 26 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 2.56 8.07 -2.39 -0.02 2.54 16 28 H 0.10 2.26 8.07 -2.38 -0.02 2.24 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.53 8.03 -2.39 -0.02 1.51 16 31 H 0.04 0.74 8.12 -2.38 -0.02 0.72 16 32 H 0.07 1.34 6.28 -2.39 -0.02 1.32 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.62 7.87 -2.39 -0.02 1.60 16 41 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 2.38 6.24 -2.39 -0.01 2.37 16 43 H 0.01 0.62 8.14 -2.39 -0.02 0.61 16 44 H 0.07 2.86 6.79 -2.39 -0.02 2.84 16 Total: -1.00 -65.52 336.12 -1.74 -67.27 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 0.94 Total: 7.74 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 4.65 Total: -7.98 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -7.75 Total: -103.73 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -1.60 Total: -9.83 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -65.52 -1.74 -67.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336688355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.114 kcal (2) G-P(sol) polarization free energy of solvation -65.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds