Wall clock time and date at job start Mon Mar 30 2020 01:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99742 * 2 1 4 4 H 1.48498 * 109.47226 * 239.99659 * 3 2 1 5 5 H 1.48505 * 109.47561 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47157 * 119.99789 * 3 2 1 7 7 C 1.37877 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00348 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99735 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47171 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47409 * 180.02562 * 10 9 7 12 12 C 1.34770 * 119.99940 * 179.97438 * 11 10 9 13 13 O 1.21587 * 120.00073 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00189 * 179.97438 * 12 11 10 15 15 C 1.46490 * 120.00363 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47266 * 180.02562 * 15 14 12 17 17 C 1.53003 * 109.47400 * 179.97438 * 16 15 14 18 18 C 1.52994 * 109.47126 * 180.02562 * 17 16 15 19 19 C 1.54961 * 110.92578 * 71.54077 * 18 17 16 20 20 C 1.54270 * 104.16191 * 156.29427 * 19 18 17 21 21 C 1.53869 * 106.63967 * 336.44607 * 20 19 18 22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19 23 23 H 0.97001 * 120.00157 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47074 * 60.00092 * 9 7 2 25 25 H 1.08999 * 109.47574 * 300.00078 * 9 7 2 26 26 H 1.09004 * 109.46963 * 60.00126 * 10 9 7 27 27 H 1.08999 * 109.47019 * 300.00521 * 10 9 7 28 28 H 0.96996 * 119.99720 * 0.02562 * 11 10 9 29 29 H 0.97007 * 119.99391 * 0.02562 * 14 12 11 30 30 H 1.08999 * 109.47504 * 60.00267 * 15 14 12 31 31 H 1.09000 * 109.47105 * 299.99936 * 15 14 12 32 32 H 1.09001 * 109.47169 * 60.00313 * 16 15 14 33 33 H 1.09000 * 109.46864 * 299.99909 * 16 15 14 34 34 H 1.08995 * 109.46922 * 59.99869 * 17 16 15 35 35 H 1.09000 * 109.47141 * 299.99866 * 17 16 15 36 36 H 1.09001 * 110.67554 * 308.23161 * 18 17 16 37 37 H 1.08997 * 110.47708 * 37.64024 * 19 18 17 38 38 H 1.09002 * 110.53308 * 274.97416 * 19 18 17 39 39 H 1.09002 * 110.03399 * 217.13605 * 20 19 18 40 40 H 1.08995 * 110.02943 * 95.75505 * 20 19 18 41 41 H 1.08999 * 110.03405 * 119.26051 * 21 20 19 42 42 H 1.09001 * 110.03705 * 240.64196 * 21 20 19 43 43 H 1.08997 * 110.48788 * 142.28685 * 22 21 20 44 44 H 1.09000 * 110.48806 * 264.79985 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.1868 -6.0979 0.0013 13 8 3.4027 -6.0979 0.0008 14 7 1.5130 -7.2652 0.0023 15 6 2.2455 -8.5338 0.0022 16 6 1.2513 -9.6968 0.0028 17 6 2.0163 -11.0219 0.0021 18 6 1.0221 -12.1847 0.0020 19 6 0.3136 -12.3071 -1.3707 20 6 -0.1389 -13.7807 -1.4319 21 6 0.7814 -14.5641 -0.4795 22 6 1.7622 -13.5397 0.1275 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6248 -2.5563 0.8919 26 1 2.8727 -3.6039 0.8910 27 1 2.8714 -3.6046 -0.8890 28 1 0.5430 -4.9308 0.0020 29 1 0.5430 -7.2652 0.0031 30 1 2.8729 -8.5913 0.8917 31 1 2.8714 -8.5919 -0.8883 32 1 0.6243 -9.6393 -0.8869 33 1 0.6251 -9.6389 0.8931 34 1 2.6437 -11.0797 0.8915 35 1 2.6423 -11.0795 -0.8884 36 1 0.2927 -12.0674 0.8034 37 1 1.0100 -12.0880 -2.1801 38 1 -0.5481 -11.6412 -1.4168 39 1 -0.0354 -14.1612 -2.4481 40 1 -1.1750 -13.8669 -1.1049 41 1 0.1919 -15.0298 0.3102 42 1 1.3309 -15.3253 -1.0332 43 1 1.9573 -13.7722 1.1744 44 1 2.6937 -13.5217 -0.4383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343637994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:28 Heat of formation + Delta-G solvation = -79.097999 kcal Electronic energy + Delta-G solvation = -19501.437448 eV Core-core repulsion = 16451.711005 eV Total energy + Delta-G solvation = -3049.726443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.55361 -38.78868 -35.81693 -34.62868 -33.09603 -32.63883 -29.84285 -29.07022 -28.54333 -25.24139 -24.11530 -21.91611 -21.03133 -20.56430 -20.48882 -20.11321 -17.86993 -16.40515 -16.26528 -15.91947 -15.74325 -15.12783 -14.80444 -14.50113 -13.99996 -13.77253 -13.72224 -13.51498 -13.16178 -12.75219 -12.38129 -12.24837 -11.84934 -11.66409 -11.41716 -11.23834 -11.16675 -10.98749 -10.89161 -10.86727 -10.77042 -10.67115 -10.62674 -10.27513 -9.89583 -9.52108 -9.24685 -8.95381 -8.45214 -8.19756 -6.06840 -4.09389 3.11213 3.33227 3.36742 3.40762 3.65582 4.18542 4.26967 4.34441 4.42245 4.70838 4.74271 4.79379 4.98700 5.07390 5.14251 5.22880 5.29248 5.30066 5.34432 5.39509 5.45938 5.53786 5.61735 5.69061 5.73361 5.76583 5.85661 5.95836 5.99577 6.06713 6.14395 6.34430 6.43610 6.68009 6.81566 7.05103 7.29743 7.60019 7.66410 7.92460 8.29059 8.49222 8.95552 9.05693 9.55086 11.04779 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.061685 B = 0.002161 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.811370 B =12954.863595 C =13256.205870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.740 5.740 12 C 0.697 3.303 13 O -0.600 6.600 14 N -0.755 5.755 15 C 0.140 3.860 16 C -0.130 4.130 17 C -0.108 4.108 18 C -0.092 4.092 19 C -0.121 4.121 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.122 4.122 23 H 0.262 0.738 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.393 0.607 29 H 0.393 0.607 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.121 -27.731 -0.786 27.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.393 5.393 12 C 0.397 3.603 13 O -0.479 6.479 14 N -0.412 5.412 15 C 0.015 3.985 16 C -0.168 4.168 17 C -0.146 4.146 18 C -0.111 4.111 19 C -0.159 4.159 20 C -0.164 4.164 21 C -0.163 4.163 22 C -0.159 4.159 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.226 0.774 29 H 0.227 0.773 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.118 -27.582 -0.789 27.616 hybrid contribution -0.577 0.913 -0.007 1.080 sum -1.695 -26.669 -0.796 26.735 Atomic orbital electron populations 1.69951 1.06076 1.26932 1.50430 1.25000 0.94908 0.99401 0.95037 0.86561 0.79494 0.82623 0.78777 1.20116 1.21275 1.20120 1.21023 0.93250 0.90386 1.51290 0.92260 1.19322 0.94260 0.91082 0.97788 1.21583 0.95637 0.80467 1.00613 1.45532 1.09812 1.05364 1.78602 1.16088 0.85657 0.80545 0.78042 1.90882 1.11835 1.86725 1.58432 1.45148 1.09411 1.04851 1.81754 1.21118 0.94191 0.81141 1.02060 1.21814 0.98476 0.93791 1.02749 1.21493 0.97707 0.92818 1.02610 1.22164 0.97143 0.94081 0.97676 1.22466 1.00118 0.96044 0.97230 1.22139 0.99291 0.95511 0.99487 1.22128 0.97544 0.97999 0.98672 1.22424 0.98390 0.94387 1.00726 0.92832 0.95984 0.95976 0.92820 0.92829 0.77430 0.77342 0.91993 0.92005 0.91248 0.91369 0.91519 0.91491 0.90610 0.91480 0.91659 0.92048 0.92031 0.92054 0.92062 0.91784 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.33 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.14 3.09 5.61 -4.04 -0.02 3.07 16 11 N -0.74 -13.53 5.56 -65.22 -0.36 -13.89 16 12 C 0.70 12.71 8.57 -86.92 -0.74 11.97 16 13 O -0.60 -13.45 16.34 5.29 0.09 -13.36 16 14 N -0.75 -9.89 5.56 -65.23 -0.36 -10.25 16 15 C 0.14 1.58 5.67 -4.05 -0.02 1.55 16 16 C -0.13 -1.01 5.22 -26.73 -0.14 -1.14 16 17 C -0.11 -0.75 4.72 -26.73 -0.13 -0.88 16 18 C -0.09 -0.59 2.86 -88.59 -0.25 -0.84 16 19 C -0.12 -0.77 5.71 -25.03 -0.14 -0.92 16 20 C -0.13 -0.76 6.80 -25.61 -0.17 -0.94 16 21 C -0.13 -0.74 6.80 -25.62 -0.17 -0.91 16 22 C -0.12 -0.75 6.27 -25.07 -0.16 -0.90 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.39 6.14 8.49 -40.82 -0.35 5.79 16 29 H 0.39 3.99 8.49 -40.82 -0.35 3.65 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.51 7.66 -51.93 -0.40 0.11 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.48 8.00 -51.93 -0.42 0.06 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.45 7.95 -51.93 -0.41 0.03 16 38 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.41 8.05 -51.93 -0.42 0.00 16 LS Contribution 356.27 15.07 5.37 5.37 Total: -1.00 -32.46 356.27 -10.28 -42.74 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.22 Total: 1.60 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.51 Total: -3.17 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.01 Total: -49.74 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.46 -10.28 -42.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343637994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.357 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds