Wall clock time and date at job start Mon Mar 30 2020 01:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99742 * 2 1 4 4 H 1.48498 * 109.47226 * 239.99659 * 3 2 1 5 5 H 1.48505 * 109.47561 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47157 * 119.99789 * 3 2 1 7 7 C 1.37877 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00348 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99735 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47171 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47409 * 180.02562 * 10 9 7 12 12 C 1.34770 * 119.99940 * 179.97438 * 11 10 9 13 13 O 1.21587 * 120.00073 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00189 * 179.97438 * 12 11 10 15 15 C 1.46490 * 120.00363 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47266 * 180.02562 * 15 14 12 17 17 C 1.53003 * 109.47400 * 179.97438 * 16 15 14 18 18 C 1.52994 * 109.47126 * 180.02562 * 17 16 15 19 19 C 1.54961 * 110.92578 * 71.54077 * 18 17 16 20 20 C 1.54270 * 104.16191 * 156.29427 * 19 18 17 21 21 C 1.53869 * 106.63967 * 336.44607 * 20 19 18 22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19 23 23 H 0.97001 * 120.00157 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47074 * 60.00092 * 9 7 2 25 25 H 1.08999 * 109.47574 * 300.00078 * 9 7 2 26 26 H 1.09004 * 109.46963 * 60.00126 * 10 9 7 27 27 H 1.08999 * 109.47019 * 300.00521 * 10 9 7 28 28 H 0.96996 * 119.99720 * 0.02562 * 11 10 9 29 29 H 0.97007 * 119.99391 * 0.02562 * 14 12 11 30 30 H 1.08999 * 109.47504 * 60.00267 * 15 14 12 31 31 H 1.09000 * 109.47105 * 299.99936 * 15 14 12 32 32 H 1.09001 * 109.47169 * 60.00313 * 16 15 14 33 33 H 1.09000 * 109.46864 * 299.99909 * 16 15 14 34 34 H 1.08995 * 109.46922 * 59.99869 * 17 16 15 35 35 H 1.09000 * 109.47141 * 299.99866 * 17 16 15 36 36 H 1.09001 * 110.67554 * 308.23161 * 18 17 16 37 37 H 1.08997 * 110.47708 * 37.64024 * 19 18 17 38 38 H 1.09002 * 110.53308 * 274.97416 * 19 18 17 39 39 H 1.09002 * 110.03399 * 217.13605 * 20 19 18 40 40 H 1.08995 * 110.02943 * 95.75505 * 20 19 18 41 41 H 1.08999 * 110.03405 * 119.26051 * 21 20 19 42 42 H 1.09001 * 110.03705 * 240.64196 * 21 20 19 43 43 H 1.08997 * 110.48788 * 142.28685 * 22 21 20 44 44 H 1.09000 * 110.48806 * 264.79985 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.1868 -6.0979 0.0013 13 8 3.4027 -6.0979 0.0008 14 7 1.5130 -7.2652 0.0023 15 6 2.2455 -8.5338 0.0022 16 6 1.2513 -9.6968 0.0028 17 6 2.0163 -11.0219 0.0021 18 6 1.0221 -12.1847 0.0020 19 6 0.3136 -12.3071 -1.3707 20 6 -0.1389 -13.7807 -1.4319 21 6 0.7814 -14.5641 -0.4795 22 6 1.7622 -13.5397 0.1275 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6248 -2.5563 0.8919 26 1 2.8727 -3.6039 0.8910 27 1 2.8714 -3.6046 -0.8890 28 1 0.5430 -4.9308 0.0020 29 1 0.5430 -7.2652 0.0031 30 1 2.8729 -8.5913 0.8917 31 1 2.8714 -8.5919 -0.8883 32 1 0.6243 -9.6393 -0.8869 33 1 0.6251 -9.6389 0.8931 34 1 2.6437 -11.0797 0.8915 35 1 2.6423 -11.0795 -0.8884 36 1 0.2927 -12.0674 0.8034 37 1 1.0100 -12.0880 -2.1801 38 1 -0.5481 -11.6412 -1.4168 39 1 -0.0354 -14.1612 -2.4481 40 1 -1.1750 -13.8669 -1.1049 41 1 0.1919 -15.0298 0.3102 42 1 1.3309 -15.3253 -1.0332 43 1 1.9573 -13.7722 1.1744 44 1 2.6937 -13.5217 -0.4383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343637994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:27 Heat of formation + Delta-G solvation = -99.324548 kcal Electronic energy + Delta-G solvation = -19502.314537 eV Core-core repulsion = 16451.711005 eV Total energy + Delta-G solvation = -3050.603532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.97505 -39.34279 -37.01334 -36.23346 -34.82894 -33.83450 -31.50653 -29.69332 -29.37974 -26.80759 -25.31718 -22.96486 -22.58598 -21.95613 -20.99176 -20.71784 -19.30400 -18.40608 -17.25620 -16.99585 -16.65435 -16.48277 -15.97601 -15.87296 -15.19744 -15.13596 -14.96776 -14.29243 -14.21369 -14.18643 -13.52768 -13.21913 -13.18573 -12.90995 -12.54595 -12.52641 -12.22638 -12.14527 -11.90063 -11.83968 -11.69078 -11.57607 -11.44531 -11.38982 -11.23014 -11.21043 -11.13627 -10.59315 -10.33240 -9.69481 -8.23036 -6.33340 1.42560 1.45146 1.52930 1.80275 2.17576 2.42364 3.11542 3.39625 3.69342 3.75713 3.85183 4.10412 4.13210 4.33890 4.48470 4.50841 4.53156 4.62840 4.70155 4.72041 4.78127 4.82010 4.87114 4.89563 4.95541 5.02633 5.12280 5.15238 5.26572 5.31353 5.33169 5.35048 5.43074 5.52012 5.55982 5.56509 5.60325 5.63054 5.79888 6.07799 6.18288 6.79496 7.15587 7.35774 7.61496 8.88608 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.061685 B = 0.002161 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.811370 B =12954.863595 C =13256.205870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.160 3.840 11 N -0.734 5.734 12 C 0.694 3.306 13 O -0.643 6.643 14 N -0.733 5.733 15 C 0.137 3.863 16 C -0.117 4.117 17 C -0.105 4.105 18 C -0.089 4.089 19 C -0.122 4.122 20 C -0.128 4.128 21 C -0.127 4.127 22 C -0.123 4.123 23 H 0.266 0.734 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.407 0.593 29 H 0.411 0.589 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.482 -28.374 -0.726 28.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.035 3.965 11 N -0.389 5.389 12 C 0.394 3.606 13 O -0.526 6.526 14 N -0.390 5.390 15 C 0.013 3.987 16 C -0.155 4.155 17 C -0.143 4.143 18 C -0.107 4.107 19 C -0.160 4.160 20 C -0.166 4.166 21 C -0.164 4.164 22 C -0.161 4.161 23 H 0.075 0.925 24 H 0.027 0.973 25 H 0.028 0.972 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.243 0.757 29 H 0.248 0.752 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.532 -28.276 -0.730 28.326 hybrid contribution -0.488 1.036 -0.029 1.145 sum -2.020 -27.240 -0.759 27.325 Atomic orbital electron populations 1.70054 1.07500 1.28050 1.50946 1.25879 0.95834 1.03097 0.94421 0.85488 0.78287 0.78089 0.79110 1.19366 1.20541 1.19376 1.21442 0.93617 0.91927 1.51627 0.92301 1.19126 0.94219 0.91610 0.96387 1.21072 0.94658 0.81205 0.99532 1.45218 1.10391 1.04441 1.78808 1.16237 0.85169 0.81422 0.77762 1.90853 1.13917 1.87429 1.60381 1.45014 1.10367 1.03828 1.79820 1.21277 0.95005 0.81256 1.01116 1.21728 0.97661 0.92367 1.03702 1.21463 0.97774 0.92586 1.02526 1.22124 0.96969 0.93849 0.97779 1.22476 1.00101 0.96362 0.97030 1.22157 0.99468 0.95306 0.99645 1.22142 0.97520 0.97989 0.98773 1.22435 0.98354 0.94345 1.00926 0.92541 0.97258 0.97244 0.93912 0.93929 0.75729 0.75237 0.92972 0.93039 0.90338 0.90298 0.91557 0.91743 0.90377 0.91873 0.91425 0.91936 0.91774 0.91731 0.91831 0.91500 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.49 13.29 21.45 0.28 -54.20 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.55 -30.96 9.11 25.60 0.23 -30.73 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.02 1.23 5.09 29.85 0.15 1.39 16 10 C 0.16 7.12 5.61 86.38 0.48 7.61 16 11 N -0.73 -26.50 5.56 -478.53 -2.66 -29.16 16 12 C 0.69 24.91 8.57 179.06 1.53 26.44 16 13 O -0.64 -28.96 16.34 -3.99 -0.07 -29.02 16 14 N -0.73 -18.14 5.56 -478.56 -2.66 -20.80 16 15 C 0.14 2.94 5.67 86.38 0.49 3.43 16 16 C -0.12 -1.56 5.22 30.60 0.16 -1.40 16 17 C -0.11 -1.30 4.72 30.59 0.14 -1.15 16 18 C -0.09 -0.98 2.86 -9.48 -0.03 -1.01 16 19 C -0.12 -1.36 5.71 31.70 0.18 -1.18 16 20 C -0.13 -1.36 6.80 31.32 0.21 -1.14 16 21 C -0.13 -1.30 6.80 31.32 0.21 -1.09 16 22 C -0.12 -1.34 6.27 31.67 0.20 -1.14 16 23 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 24 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 25 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 27 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.41 12.31 8.49 -92.71 -0.79 11.53 16 29 H 0.41 7.38 8.49 -92.70 -0.79 6.59 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 0.95 7.66 -2.39 -0.02 0.93 16 33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 0.84 8.00 -2.39 -0.02 0.82 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 0.75 7.95 -2.39 -0.02 0.73 16 38 H 0.07 0.72 8.10 -2.39 -0.02 0.70 16 39 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.06 0.73 8.05 -2.39 -0.02 0.71 16 Total: -1.00 -68.87 356.27 0.75 -68.12 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -0.61 Total: 18.28 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 4.44 Total: 0.86 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -5.04 Total: -104.16 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.07 Total: -29.02 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -68.87 0.75 -68.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343637994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.202 kcal (2) G-P(sol) polarization free energy of solvation -68.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds