Wall clock time and date at job start Mon Mar 30 2020 01:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.53000 * 109.47060 * 300.00449 * 3 2 1 5 5 C 1.53002 * 109.47233 * 299.99657 * 4 3 2 6 6 C 1.52997 * 109.47415 * 180.02562 * 5 4 3 7 7 N 1.46493 * 109.47228 * 175.00130 * 6 5 4 8 8 C 1.34782 * 120.00325 * 180.02562 * 7 6 5 9 9 O 1.21583 * 119.99371 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00291 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99969 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47267 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.47332 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99475 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00147 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00192 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 119.99907 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46917 * 90.00266 * 17 15 13 19 19 H 1.48498 * 109.46779 * 210.00647 * 17 15 13 20 20 H 1.48504 * 109.46985 * 330.00248 * 17 15 13 21 21 C 1.52997 * 109.46817 * 60.00194 * 5 4 3 22 22 C 1.52999 * 109.46623 * 240.00064 * 2 1 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 26 26 H 1.08996 * 109.46884 * 120.00752 * 2 1 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 29 29 H 1.08992 * 109.47399 * 59.99823 * 4 3 2 30 30 H 1.09004 * 109.46724 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.47075 * 300.00932 * 5 4 3 32 32 H 1.09000 * 109.46818 * 295.00198 * 6 5 4 33 33 H 1.09001 * 109.47096 * 55.00094 * 6 5 4 34 34 H 0.97003 * 120.00270 * 0.02562 * 7 6 5 35 35 H 0.97003 * 120.00304 * 359.97438 * 10 8 7 36 36 H 1.09003 * 109.47349 * 299.99785 * 11 10 8 37 37 H 1.08993 * 109.47273 * 59.99988 * 11 10 8 38 38 H 1.09003 * 109.46800 * 300.00170 * 12 11 10 39 39 H 1.09002 * 109.46850 * 59.99578 * 12 11 10 40 40 H 0.96996 * 119.99790 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.47153 * 60.00231 * 21 5 4 42 42 H 1.09001 * 109.47289 * 180.02562 * 21 5 4 43 43 H 1.09000 * 109.47486 * 299.99829 * 22 2 1 44 44 H 1.09002 * 109.46716 * 179.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1637 -1.2492 5 6 2.0399 1.4426 -2.4985 6 6 1.5304 2.1642 -3.7477 7 7 2.1145 1.5466 -4.9408 8 6 1.8068 2.0207 -6.1644 9 8 1.0440 2.9606 -6.2779 10 7 2.3437 1.4522 -7.2620 11 6 2.0088 1.9672 -8.5919 12 6 2.7467 1.1515 -9.6555 13 6 2.4026 1.6817 -11.0236 14 1 1.7250 2.5166 -11.1244 15 6 2.9520 1.1002 -12.1465 16 7 2.6522 1.5632 -13.3404 17 14 4.1235 -0.3444 -11.9721 18 1 3.3520 -1.6130 -11.9965 19 1 5.0938 -0.3332 -13.0961 20 1 4.8559 -0.2351 -10.6848 21 6 1.5299 0.0001 -2.4985 22 6 2.0399 -0.7213 -1.2493 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9562 0.8900 29 1 0.4400 2.1637 -1.2492 30 1 1.8937 3.1913 -1.2494 31 1 3.1299 1.4425 -2.4985 32 1 0.4441 2.0876 -3.7938 33 1 1.8191 3.2143 -3.7038 34 1 2.7228 0.7964 -4.8503 35 1 2.9520 0.7020 -7.1715 36 1 0.9337 1.8864 -8.7527 37 1 2.3092 3.0125 -8.6631 38 1 3.8217 1.2328 -9.4945 39 1 2.4467 0.1060 -9.5845 40 1 3.0390 1.1543 -14.1303 41 1 0.4399 0.0001 -2.4985 42 1 1.8936 -0.5139 -3.3883 43 1 1.6766 -1.7489 -1.2493 44 1 3.1300 -0.7209 -1.2495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343984121.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:36 Heat of formation + Delta-G solvation = -71.418055 kcal Electronic energy + Delta-G solvation = -20367.074112 eV Core-core repulsion = 17317.680697 eV Total energy + Delta-G solvation = -3049.393415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.04750 -39.14966 -35.48044 -34.62336 -32.83170 -32.08916 -31.09773 -29.96223 -27.75264 -25.51950 -24.23163 -22.98715 -21.30929 -20.75291 -20.57110 -18.96862 -17.97287 -16.85447 -16.14912 -15.86925 -15.45861 -14.95188 -14.55644 -14.37525 -14.16719 -13.93803 -13.69929 -13.49856 -13.09242 -12.99800 -12.59066 -12.53519 -12.33750 -11.89465 -11.67937 -11.45295 -11.34333 -11.27362 -11.15340 -10.52598 -10.38471 -10.35621 -10.30280 -10.23203 -9.95426 -9.72081 -9.30015 -9.00690 -8.60667 -8.33109 -6.09028 -4.08856 3.04139 3.26466 3.33922 3.35401 3.58276 4.27633 4.33148 4.39384 4.39668 4.61581 4.77193 4.86928 4.89935 5.02892 5.09605 5.20553 5.23906 5.26459 5.35475 5.46908 5.52475 5.58973 5.68520 5.69574 5.75393 5.80228 5.84609 5.95546 6.03751 6.06278 6.12772 6.22225 6.28356 6.59427 6.64824 6.86228 7.08992 7.27632 7.34259 7.69938 8.34771 8.48799 8.94901 8.97806 9.51176 11.04094 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037799 B = 0.002889 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.589361 B = 9688.181722 C =10127.074953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.113 4.113 4 C -0.114 4.114 5 C -0.097 4.097 6 C 0.144 3.856 7 N -0.752 5.752 8 C 0.698 3.302 9 O -0.596 6.596 10 N -0.743 5.743 11 C 0.148 3.852 12 C -0.021 4.021 13 C -0.521 4.521 14 H 0.076 0.924 15 C 0.068 3.932 16 N -0.899 5.899 17 Si 0.883 3.117 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.117 4.117 22 C -0.115 4.115 23 H 0.063 0.937 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.392 0.608 35 H 0.391 0.609 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.021 0.979 39 H 0.017 0.983 40 H 0.264 0.736 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.382 -5.220 28.895 29.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.111 4.111 3 C -0.150 4.150 4 C -0.152 4.152 5 C -0.116 4.116 6 C 0.020 3.980 7 N -0.409 5.409 8 C 0.398 3.602 9 O -0.474 6.474 10 N -0.397 5.397 11 C 0.026 3.974 12 C -0.059 4.059 13 C -0.560 4.560 14 H 0.094 0.906 15 C -0.133 4.133 16 N -0.538 5.538 17 Si 0.710 3.290 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.155 4.155 22 C -0.152 4.152 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.226 0.774 35 H 0.223 0.777 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.039 0.961 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.315 -4.339 28.554 28.884 hybrid contribution 1.219 -1.509 -0.027 1.940 sum 0.904 -5.848 28.527 29.135 Atomic orbital electron populations 1.21955 0.95315 1.01632 1.02052 1.21103 0.96006 0.96024 0.97988 1.21544 1.00531 0.95254 0.97706 1.21534 1.01388 0.98868 0.93371 1.21402 1.00871 0.95333 0.94023 1.21166 0.98008 0.96621 0.82228 1.45145 1.52597 1.38366 1.04823 1.16049 0.81131 0.82631 0.80422 1.90900 1.40159 1.30473 1.85894 1.45516 1.50709 1.37244 1.06228 1.21361 0.99925 0.98217 0.77942 1.19796 0.95895 0.95542 0.94699 1.20929 1.28937 1.17914 0.88205 0.90583 1.25004 0.96208 0.96981 0.95145 1.69907 1.44373 1.41711 0.97759 0.86742 0.81252 0.83060 0.77941 1.20258 1.21311 1.19107 1.21646 1.01410 0.94737 0.97675 1.21567 1.00492 0.98806 0.94339 0.91802 0.92939 0.92951 0.91548 0.92010 0.91963 0.91245 0.91665 0.90632 0.91883 0.91870 0.77401 0.77660 0.92211 0.92192 0.96056 0.96493 0.92578 0.91323 0.91916 0.92027 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.50 37.16 0.32 -0.63 16 2 C -0.09 -0.57 3.20 -90.62 -0.29 -0.85 16 3 C -0.11 -0.69 5.45 -26.73 -0.15 -0.83 16 4 C -0.11 -0.78 4.93 -26.73 -0.13 -0.91 16 5 C -0.10 -0.74 2.22 -90.62 -0.20 -0.94 16 6 C 0.14 1.56 5.07 -4.05 -0.02 1.54 16 7 N -0.75 -9.23 5.29 -65.23 -0.35 -9.57 16 8 C 0.70 12.08 8.57 -86.92 -0.74 11.34 16 9 O -0.60 -12.94 16.34 5.29 0.09 -12.85 16 10 N -0.74 -12.70 5.56 -65.23 -0.36 -13.06 16 11 C 0.15 3.13 5.61 -4.04 -0.02 3.11 16 12 C -0.02 -0.50 4.16 -27.88 -0.12 -0.61 16 13 C -0.52 -14.77 9.66 -34.44 -0.33 -15.11 16 14 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 17 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 21 C -0.12 -0.86 4.80 -26.73 -0.13 -0.98 16 22 C -0.11 -0.73 5.45 -26.73 -0.15 -0.88 16 23 H 0.06 0.43 4.81 -51.93 -0.25 0.18 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.49 6.43 -51.93 -0.33 0.15 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.39 3.71 7.67 -40.82 -0.31 3.40 16 35 H 0.39 5.50 8.49 -40.82 -0.35 5.15 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 39 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.07 0.54 6.43 -51.93 -0.33 0.21 16 42 H 0.06 0.47 7.18 -51.93 -0.37 0.10 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 340.37 15.07 5.13 5.13 Total: -1.00 -32.92 340.37 -9.25 -42.17 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -7.80 Total: 2.37 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -2.06 Total: -3.89 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.07 Total: -49.43 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.09 Total: -12.85 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.92 -9.25 -42.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343984121.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.251 kcal (2) G-P(sol) polarization free energy of solvation -32.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds