Wall clock time and date at job start Mon Mar 30 2020 01:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.53000 * 109.47060 * 300.00449 * 3 2 1 5 5 C 1.53002 * 109.47233 * 299.99657 * 4 3 2 6 6 C 1.52997 * 109.47415 * 180.02562 * 5 4 3 7 7 N 1.46493 * 109.47228 * 175.00130 * 6 5 4 8 8 C 1.34782 * 120.00325 * 180.02562 * 7 6 5 9 9 O 1.21583 * 119.99371 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00291 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99969 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47267 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.47332 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99475 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00147 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00192 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 119.99907 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46917 * 90.00266 * 17 15 13 19 19 H 1.48498 * 109.46779 * 210.00647 * 17 15 13 20 20 H 1.48504 * 109.46985 * 330.00248 * 17 15 13 21 21 C 1.52997 * 109.46817 * 60.00194 * 5 4 3 22 22 C 1.52999 * 109.46623 * 240.00064 * 2 1 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 26 26 H 1.08996 * 109.46884 * 120.00752 * 2 1 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 29 29 H 1.08992 * 109.47399 * 59.99823 * 4 3 2 30 30 H 1.09004 * 109.46724 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.47075 * 300.00932 * 5 4 3 32 32 H 1.09000 * 109.46818 * 295.00198 * 6 5 4 33 33 H 1.09001 * 109.47096 * 55.00094 * 6 5 4 34 34 H 0.97003 * 120.00270 * 0.02562 * 7 6 5 35 35 H 0.97003 * 120.00304 * 359.97438 * 10 8 7 36 36 H 1.09003 * 109.47349 * 299.99785 * 11 10 8 37 37 H 1.08993 * 109.47273 * 59.99988 * 11 10 8 38 38 H 1.09003 * 109.46800 * 300.00170 * 12 11 10 39 39 H 1.09002 * 109.46850 * 59.99578 * 12 11 10 40 40 H 0.96996 * 119.99790 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.47153 * 60.00231 * 21 5 4 42 42 H 1.09001 * 109.47289 * 180.02562 * 21 5 4 43 43 H 1.09000 * 109.47486 * 299.99829 * 22 2 1 44 44 H 1.09002 * 109.46716 * 179.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1637 -1.2492 5 6 2.0399 1.4426 -2.4985 6 6 1.5304 2.1642 -3.7477 7 7 2.1145 1.5466 -4.9408 8 6 1.8068 2.0207 -6.1644 9 8 1.0440 2.9606 -6.2779 10 7 2.3437 1.4522 -7.2620 11 6 2.0088 1.9672 -8.5919 12 6 2.7467 1.1515 -9.6555 13 6 2.4026 1.6817 -11.0236 14 1 1.7250 2.5166 -11.1244 15 6 2.9520 1.1002 -12.1465 16 7 2.6522 1.5632 -13.3404 17 14 4.1235 -0.3444 -11.9721 18 1 3.3520 -1.6130 -11.9965 19 1 5.0938 -0.3332 -13.0961 20 1 4.8559 -0.2351 -10.6848 21 6 1.5299 0.0001 -2.4985 22 6 2.0399 -0.7213 -1.2493 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9562 0.8900 29 1 0.4400 2.1637 -1.2492 30 1 1.8937 3.1913 -1.2494 31 1 3.1299 1.4425 -2.4985 32 1 0.4441 2.0876 -3.7938 33 1 1.8191 3.2143 -3.7038 34 1 2.7228 0.7964 -4.8503 35 1 2.9520 0.7020 -7.1715 36 1 0.9337 1.8864 -8.7527 37 1 2.3092 3.0125 -8.6631 38 1 3.8217 1.2328 -9.4945 39 1 2.4467 0.1060 -9.5845 40 1 3.0390 1.1543 -14.1303 41 1 0.4399 0.0001 -2.4985 42 1 1.8936 -0.5139 -3.3883 43 1 1.6766 -1.7489 -1.2493 44 1 3.1300 -0.7209 -1.2495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343984121.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:35 Heat of formation + Delta-G solvation = -93.653569 kcal Electronic energy + Delta-G solvation = -20368.038316 eV Core-core repulsion = 17317.680697 eV Total energy + Delta-G solvation = -3050.357620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.13795 -40.03626 -36.83781 -35.98243 -34.78884 -33.10936 -31.74985 -31.55898 -28.49468 -26.87122 -25.49478 -23.56871 -22.66143 -21.99030 -21.89169 -19.61601 -19.25774 -18.86749 -17.21799 -16.81261 -16.62660 -16.26378 -15.66480 -15.48292 -15.32495 -15.29495 -14.78455 -14.66198 -14.54493 -13.91367 -13.60619 -13.33589 -13.25420 -13.02263 -12.93076 -12.45887 -12.33142 -12.16459 -12.14863 -11.85771 -11.79485 -11.74841 -11.53174 -11.30498 -11.05092 -10.89962 -10.84284 -10.77920 -10.34498 -9.70835 -8.29030 -6.36399 1.39927 1.42914 1.54188 1.77661 2.17820 2.37978 3.05968 3.38841 3.66593 3.79474 3.85984 4.20051 4.26855 4.31633 4.36720 4.45898 4.51208 4.53203 4.64961 4.68215 4.74739 4.76811 4.87008 4.89434 5.01530 5.05576 5.16107 5.19820 5.21560 5.23181 5.31831 5.42564 5.43105 5.45807 5.49324 5.53018 5.56343 5.67786 5.70071 6.05871 6.24395 6.71006 7.16227 7.28071 7.62064 8.87885 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037799 B = 0.002889 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.589361 B = 9688.181722 C =10127.074953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.093 4.093 3 C -0.109 4.109 4 C -0.114 4.114 5 C -0.084 4.084 6 C 0.144 3.856 7 N -0.729 5.729 8 C 0.695 3.305 9 O -0.644 6.644 10 N -0.732 5.732 11 C 0.164 3.836 12 C -0.011 4.011 13 C -0.539 4.539 14 H 0.028 0.972 15 C 0.003 3.997 16 N -0.951 5.951 17 Si 0.961 3.039 18 H -0.265 1.265 19 H -0.287 1.287 20 H -0.236 1.236 21 C -0.117 4.117 22 C -0.112 4.112 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.411 0.589 35 H 0.410 0.590 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.268 0.732 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.319 -7.559 31.276 32.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.111 4.111 3 C -0.147 4.147 4 C -0.152 4.152 5 C -0.103 4.103 6 C 0.019 3.981 7 N -0.386 5.386 8 C 0.395 3.605 9 O -0.526 6.526 10 N -0.387 5.387 11 C 0.040 3.960 12 C -0.048 4.048 13 C -0.578 4.578 14 H 0.046 0.954 15 C -0.194 4.194 16 N -0.592 5.592 17 Si 0.783 3.217 18 H -0.190 1.190 19 H -0.213 1.213 20 H -0.159 1.159 21 C -0.154 4.154 22 C -0.149 4.149 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.248 0.752 35 H 0.246 0.754 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.649 -6.718 31.005 31.767 hybrid contribution 0.524 -0.689 -0.752 1.146 sum 2.173 -7.407 30.253 31.222 Atomic orbital electron populations 1.21951 0.95600 1.01585 1.01828 1.21115 0.95750 0.96056 0.98173 1.21524 1.00784 0.95124 0.97268 1.21536 1.01206 0.98985 0.93439 1.21317 1.01280 0.95243 0.92484 1.21286 0.97373 0.96573 0.82822 1.44960 1.51969 1.38226 1.03429 1.16220 0.80642 0.82138 0.81537 1.90875 1.42303 1.32712 1.86717 1.45111 1.51126 1.37759 1.04736 1.20865 0.98442 0.97062 0.79673 1.19639 0.96828 0.96281 0.92102 1.21260 1.28244 1.16930 0.91355 0.95372 1.26103 0.98342 1.00612 0.94356 1.70081 1.46199 1.43887 0.98984 0.85509 0.78540 0.78430 0.79190 1.18974 1.21300 1.15897 1.21637 1.00959 0.94436 0.98374 1.21547 1.00827 0.98754 0.93774 0.92582 0.92912 0.92644 0.90859 0.91514 0.91442 0.91663 0.91635 0.89596 0.93157 0.92928 0.75245 0.75382 0.94201 0.94197 0.94429 0.94570 0.92330 0.92149 0.91821 0.91816 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.50 71.98 0.61 -1.04 16 2 C -0.09 -0.92 3.20 -10.79 -0.03 -0.95 16 3 C -0.11 -1.08 5.45 30.59 0.17 -0.91 16 4 C -0.11 -1.37 4.93 30.60 0.15 -1.22 16 5 C -0.08 -1.12 2.22 -10.79 -0.02 -1.14 16 6 C 0.14 2.96 5.07 86.38 0.44 3.40 16 7 N -0.73 -16.55 5.29 -478.56 -2.53 -19.08 16 8 C 0.70 23.41 8.57 179.06 1.53 24.94 16 9 O -0.64 -28.31 16.34 -3.98 -0.06 -28.37 16 10 N -0.73 -23.80 5.56 -478.55 -2.66 -26.46 16 11 C 0.16 6.93 5.61 86.38 0.48 7.41 16 12 C -0.01 -0.48 4.16 29.85 0.12 -0.35 16 13 C -0.54 -31.15 9.66 25.60 0.25 -30.90 16 14 H 0.03 1.83 7.99 -2.91 -0.02 1.80 16 15 C 0.00 0.16 5.47 84.65 0.46 0.63 16 16 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 17 Si 0.96 42.38 27.47 68.60 1.88 44.26 16 18 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 19 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.24 -9.20 6.54 99.48 0.65 -8.55 16 21 C -0.12 -1.45 4.80 30.60 0.15 -1.31 16 22 C -0.11 -1.14 5.45 30.60 0.17 -0.98 16 23 H 0.06 0.69 4.81 -2.39 -0.01 0.68 16 24 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.85 6.43 -2.39 -0.02 0.84 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.41 6.50 7.67 -92.71 -0.71 5.79 16 35 H 0.41 10.17 8.49 -92.71 -0.79 9.38 16 36 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.04 1.58 7.20 -2.39 -0.02 1.57 16 39 H 0.04 1.50 7.57 -2.39 -0.02 1.48 16 40 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 41 H 0.06 0.87 6.43 -2.39 -0.02 0.86 16 42 H 0.06 0.78 7.18 -2.39 -0.02 0.76 16 43 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -73.34 340.37 0.83 -72.51 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -0.57 Total: 19.02 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 4.48 Total: -2.43 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -4.89 Total: -104.99 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.06 Total: -28.37 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.88 Total: 44.26 kcal Total: -73.34 0.83 -72.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343984121.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.146 kcal (2) G-P(sol) polarization free energy of solvation -73.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds