Wall clock time and date at job start Mon Mar 30 2020 01:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47112 * 2 1 4 4 C 1.53001 * 109.47112 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46994 * 60.00127 * 4 3 2 6 6 N 1.46500 * 109.46634 * 60.00206 * 5 4 3 7 7 C 1.46491 * 120.00533 * 0.77288 * 6 5 4 8 8 C 1.34778 * 119.99749 * 180.77396 * 6 5 4 9 9 O 1.21594 * 120.00029 * 359.72398 * 8 6 5 10 10 N 1.34777 * 120.00365 * 179.97438 * 8 6 5 11 11 C 1.46496 * 120.00331 * 180.02562 * 10 8 6 12 12 C 1.53002 * 109.47230 * 179.97438 * 11 10 8 13 13 C 1.50702 * 109.46833 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00201 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99574 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00210 * 180.02562 * 15 13 12 17 17 Si 1.86808 * 120.00156 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47175 * 89.99849 * 17 15 13 19 19 H 1.48499 * 109.47044 * 210.00151 * 17 15 13 20 20 H 1.48497 * 109.47144 * 330.00042 * 17 15 13 21 21 C 1.52995 * 109.47031 * 300.00216 * 5 4 3 22 22 C 1.52996 * 109.47698 * 59.99924 * 21 5 4 23 23 H 1.08994 * 109.47104 * 59.99189 * 1 2 3 24 24 H 1.08998 * 109.47155 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46602 * 299.99544 * 1 2 3 26 26 H 1.09000 * 109.47335 * 120.00146 * 2 1 3 27 27 H 1.09004 * 109.47015 * 60.00709 * 3 2 1 28 28 H 1.08994 * 109.47799 * 300.00386 * 3 2 1 29 29 H 1.09000 * 109.47335 * 300.00146 * 4 3 2 30 30 H 1.08998 * 109.47155 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.46839 * 179.97438 * 5 4 3 32 32 H 1.09004 * 109.47271 * 264.06916 * 7 6 5 33 33 H 1.09009 * 109.47126 * 24.06684 * 7 6 5 34 34 H 1.08993 * 109.47673 * 144.07162 * 7 6 5 35 35 H 0.96998 * 119.99594 * 359.97438 * 10 8 6 36 36 H 1.09004 * 109.46985 * 299.99799 * 11 10 8 37 37 H 1.09001 * 109.47499 * 59.99288 * 11 10 8 38 38 H 1.08998 * 109.46840 * 299.99750 * 12 11 10 39 39 H 1.09005 * 109.46645 * 59.99914 * 12 11 10 40 40 H 0.97001 * 120.00619 * 179.97438 * 16 15 13 41 41 H 1.09007 * 109.46743 * 180.02562 * 21 5 4 42 42 H 1.09008 * 109.47055 * 299.99434 * 21 5 4 43 43 H 1.08998 * 109.47445 * 179.97438 * 22 21 5 44 44 H 1.09000 * 109.46650 * 59.99642 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0805 0.7211 -1.2483 6 7 3.5927 1.4116 -2.4447 7 6 2.7645 2.6125 -2.3109 8 6 3.9058 0.9420 -3.6686 9 8 4.5974 -0.0519 -3.7798 10 7 3.4566 1.5770 -4.7693 11 6 3.7965 1.0662 -6.0996 12 6 3.1659 1.9631 -7.1668 13 6 3.5162 1.4380 -8.5353 14 1 4.1270 0.5528 -8.6339 15 6 3.0558 2.0870 -9.6612 16 7 3.3610 1.6285 -10.8555 17 14 1.9986 3.6176 -9.4905 18 1 2.8698 4.8197 -9.4568 19 1 1.0715 3.7104 -10.6468 20 1 1.2141 3.5395 -8.2321 21 6 3.5705 -0.7214 -1.2484 22 6 2.0405 -0.7214 -1.2490 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8934 -0.5138 0.8900 27 1 1.6768 1.9563 0.8901 28 1 1.6767 1.9564 -0.8899 29 1 3.9330 0.9288 0.8908 30 1 3.9334 2.4701 0.0011 31 1 5.1706 0.7215 -1.2481 32 1 1.7118 2.3371 -2.3757 33 1 2.9584 3.0820 -1.3464 34 1 3.0068 3.3121 -3.1108 35 1 2.9076 2.3717 -4.6807 36 1 4.8797 1.0624 -6.2215 37 1 3.4153 0.0507 -6.2073 38 1 2.0828 1.9665 -7.0448 39 1 3.5470 2.9787 -7.0592 40 1 3.0368 2.0849 -11.6477 41 1 3.9346 -1.2354 -2.1380 42 1 3.9335 -1.2352 -0.3582 43 1 1.6772 -1.7491 -1.2495 44 1 1.6776 -0.2077 -2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345815639.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:23 Heat of formation + Delta-G solvation = -34.205709 kcal Electronic energy + Delta-G solvation = -21552.951939 eV Core-core repulsion = 18505.172172 eV Total energy + Delta-G solvation = -3047.779767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.71043 -38.40192 -35.04198 -34.84113 -32.87351 -31.76054 -31.17932 -29.71479 -27.44317 -25.75776 -24.52615 -22.81640 -21.61165 -20.80072 -20.19953 -19.12277 -17.53713 -16.86954 -16.29455 -15.85333 -15.06586 -14.65513 -14.40770 -14.25335 -14.04081 -13.94457 -13.61335 -13.26838 -12.83835 -12.79490 -12.58575 -12.37397 -12.13384 -12.01059 -11.68540 -11.58649 -11.42330 -11.17956 -11.02433 -10.44588 -10.40522 -10.30559 -10.28772 -10.07564 -9.93544 -9.48696 -9.28215 -8.67028 -8.59132 -8.21824 -6.09070 -4.08847 2.90160 3.26175 3.33651 3.35064 3.56671 4.25519 4.39269 4.50863 4.59062 4.61363 4.90190 4.97845 5.07786 5.22701 5.23901 5.24714 5.30175 5.41868 5.43547 5.49286 5.53656 5.58492 5.65143 5.77515 5.87678 5.93952 6.02757 6.07458 6.15299 6.18280 6.28723 6.30615 6.41158 6.61706 6.71150 6.89045 7.10383 7.27558 7.31146 7.70061 8.30441 8.48151 8.95077 8.98753 9.51204 11.04072 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028509 B = 0.004018 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.905801 B = 6966.927866 C = 7226.187210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.142 4.142 4 C -0.125 4.125 5 C 0.172 3.828 6 N -0.630 5.630 7 C 0.071 3.929 8 C 0.702 3.298 9 O -0.590 6.590 10 N -0.743 5.743 11 C 0.148 3.852 12 C -0.021 4.021 13 C -0.521 4.521 14 H 0.076 0.924 15 C 0.069 3.931 16 N -0.899 5.899 17 Si 0.882 3.118 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.267 1.267 21 C -0.138 4.138 22 C -0.108 4.108 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.390 0.610 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.021 0.979 39 H 0.016 0.984 40 H 0.264 0.736 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.638 2.070 24.985 25.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.178 4.178 4 C -0.163 4.163 5 C 0.068 3.932 6 N -0.369 5.369 7 C -0.073 4.073 8 C 0.404 3.596 9 O -0.469 6.469 10 N -0.398 5.398 11 C 0.025 3.975 12 C -0.059 4.059 13 C -0.560 4.560 14 H 0.094 0.906 15 C -0.133 4.133 16 N -0.538 5.538 17 Si 0.709 3.291 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.176 4.176 22 C -0.146 4.146 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.225 0.775 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.039 0.961 39 H 0.034 0.966 40 H 0.074 0.926 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.143 1.359 24.674 25.057 hybrid contribution -0.869 1.254 -0.029 1.526 sum -5.012 2.613 24.645 25.285 Atomic orbital electron populations 1.21821 0.95501 1.01585 1.01498 1.21121 0.95179 0.96021 0.98513 1.22247 0.94975 0.97274 1.03341 1.21831 0.96507 1.00660 0.97298 1.20752 0.97736 0.91822 0.82893 1.47051 1.55814 1.29415 1.04645 1.22039 0.94645 0.87547 1.03032 1.15928 0.80508 0.83073 0.80131 1.90857 1.43289 1.27185 1.85537 1.45664 1.56379 1.31716 1.06009 1.21351 0.99939 0.98162 0.78029 1.19789 0.96187 0.95213 0.94702 1.20927 1.33334 1.13653 0.88045 0.90589 1.24995 0.95793 0.97332 0.95146 1.69903 1.45710 1.40521 0.97619 0.86754 0.80791 0.83657 0.77875 1.20244 1.21291 1.19130 1.21989 0.95761 0.96450 1.03444 1.21489 0.95600 0.99878 0.97614 0.92748 0.92848 0.92984 0.91684 0.92232 0.89395 0.90560 0.91335 0.91210 0.92475 0.89864 0.92043 0.77539 0.92249 0.92236 0.96118 0.96562 0.92578 0.89187 0.91797 0.92447 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.19 37.16 0.34 -0.83 16 2 C -0.09 -0.77 2.72 -90.62 -0.25 -1.02 16 3 C -0.14 -1.09 4.54 -26.73 -0.12 -1.21 16 4 C -0.13 -1.01 4.91 -26.73 -0.13 -1.14 16 5 C 0.17 1.96 2.94 -67.93 -0.20 1.76 16 6 N -0.63 -8.08 2.25 -179.67 -0.40 -8.48 16 7 C 0.07 0.66 7.91 59.84 0.47 1.13 16 8 C 0.70 12.17 7.98 -86.92 -0.69 11.47 16 9 O -0.59 -12.40 14.40 5.28 0.08 -12.32 16 10 N -0.74 -12.88 5.42 -65.22 -0.35 -13.24 16 11 C 0.15 3.12 5.61 -4.04 -0.02 3.10 16 12 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 13 C -0.52 -14.75 9.66 -34.44 -0.33 -15.09 16 14 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 17 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 21 C -0.14 -1.66 5.23 -26.74 -0.14 -1.80 16 22 C -0.11 -1.19 5.05 -26.73 -0.13 -1.33 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.70 3.66 -51.93 -0.19 0.51 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.49 6.90 -51.93 -0.36 0.14 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.50 6.70 -51.93 -0.35 0.15 16 33 H 0.08 0.60 4.95 -51.92 -0.26 0.35 16 34 H 0.06 0.57 6.69 -51.93 -0.35 0.22 16 35 H 0.39 5.76 6.34 -40.82 -0.26 5.50 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 39 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 41 H 0.09 1.41 6.12 -51.92 -0.32 1.09 16 42 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.80 7.60 -51.93 -0.39 0.41 16 LS Contribution 329.22 15.07 4.96 4.96 Total: -1.00 -32.30 329.22 -8.51 -40.81 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.48 Total: 2.22 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -1.42 Total: -3.66 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.02 Total: -48.48 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.08 Total: -12.32 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.30 -8.51 -40.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345815639.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.606 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds